Wall clock time and date at job start Mon Mar 30 2020 03:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47790 * 2 1 4 4 H 1.09008 * 109.46359 * 299.84114 * 3 2 1 5 5 C 1.50693 * 109.47555 * 179.83968 * 3 2 1 6 6 H 1.08005 * 120.00019 * 238.50563 * 5 3 2 7 7 C 1.37881 * 120.00010 * 58.50183 * 5 3 2 8 8 N 1.31519 * 119.99878 * 203.89162 * 7 5 3 9 9 Si 1.86801 * 120.00050 * 23.88999 * 7 5 3 10 10 H 1.48497 * 109.47039 * 91.52949 * 9 7 5 11 11 H 1.48504 * 109.46841 * 211.52803 * 9 7 5 12 12 H 1.48502 * 109.46855 * 331.52477 * 9 7 5 13 13 N 1.46898 * 109.46860 * 59.83380 * 3 2 1 14 14 C 1.46904 * 110.99952 * 162.72877 * 13 3 2 15 15 C 1.46901 * 111.00043 * 38.77812 * 13 3 2 16 16 H 1.08997 * 109.67415 * 316.60821 * 15 13 3 17 17 C 1.54520 * 109.57379 * 196.29614 * 15 13 3 18 18 C 1.45878 * 111.67052 * 162.96040 * 17 15 13 19 19 C 1.53978 * 112.67391 * 61.49614 * 18 17 15 20 20 N 1.44297 * 108.30919 * 278.59445 * 19 18 17 21 21 C 1.47946 * 113.64360 * 95.39788 * 20 19 18 22 22 C 1.50539 * 109.57373 * 76.91968 * 15 13 3 23 23 H 1.09009 * 109.46824 * 305.42633 * 1 2 3 24 24 H 1.08995 * 109.47100 * 65.42541 * 1 2 3 25 25 H 1.09000 * 109.47200 * 185.43200 * 1 2 3 26 26 H 1.09006 * 109.46653 * 239.99408 * 2 1 3 27 27 H 1.09004 * 109.47406 * 120.00383 * 2 1 3 28 28 H 0.96998 * 119.99698 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.46988 * 291.97541 * 14 13 3 30 30 H 1.09003 * 109.46908 * 51.96777 * 14 13 3 31 31 H 1.08997 * 109.47009 * 171.96942 * 14 13 3 32 32 H 1.09006 * 109.04010 * 283.52346 * 17 15 13 33 33 H 1.08996 * 109.04208 * 42.39313 * 17 15 13 34 34 H 1.09002 * 108.83949 * 182.32254 * 18 17 15 35 35 H 1.08997 * 108.84168 * 300.66552 * 18 17 15 36 36 H 1.09002 * 109.69237 * 38.29851 * 19 18 17 37 37 H 1.08999 * 109.69651 * 158.88765 * 19 18 17 38 38 H 1.00896 * 111.00337 * 221.34299 * 20 19 18 39 39 H 1.08990 * 108.71252 * 79.13222 * 21 20 19 40 40 H 1.09007 * 108.70951 * 197.26910 * 21 20 19 41 41 H 1.09010 * 108.78835 * 332.45352 * 22 15 13 42 42 H 1.08991 * 108.79124 * 90.66845 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6791 1.9554 -0.8915 5 6 3.5471 1.4424 0.0040 6 1 4.0850 1.9317 0.8025 7 6 4.2391 0.8175 -1.0118 8 7 5.4692 0.3988 -0.8087 9 14 3.4296 0.5656 -2.6763 10 1 3.7381 1.7209 -3.5567 11 1 3.9480 -0.6808 -3.2952 12 1 1.9591 0.4562 -2.5000 13 7 1.5473 2.1361 1.1974 14 6 2.3210 3.3582 1.4538 15 6 1.5658 1.2464 2.3663 16 1 1.1855 0.2642 2.0859 17 6 0.6829 1.8433 3.4852 18 6 0.3413 0.8447 4.4922 19 6 1.5804 0.2743 5.2067 20 7 2.1567 -0.7484 4.3676 21 6 3.2585 -0.2603 3.5092 22 6 2.9756 1.1143 2.8772 23 1 -0.3633 0.5958 0.8375 24 1 -0.3633 0.4274 -0.9345 25 1 -0.3633 -1.0230 0.0973 26 1 1.8932 -0.5140 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.9562 -0.0404 -1.5234 29 1 3.3365 3.0907 1.7460 30 1 2.3514 3.9655 0.5491 31 1 1.8493 3.9252 2.2563 32 1 1.2206 2.6617 3.9640 33 1 -0.2350 2.2323 3.0445 34 1 -0.3132 1.3024 5.2340 35 1 -0.1944 0.0272 4.0098 36 1 2.3084 1.0689 5.3701 37 1 1.2864 -0.1578 6.1632 38 1 2.4504 -1.5429 4.9158 39 1 4.1648 -0.1890 4.1103 40 1 3.4256 -0.9828 2.7102 41 1 3.6657 1.2678 2.0473 42 1 3.1520 1.8874 3.6249 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226466332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:23 Heat of formation + Delta-G solvation = 5.635092 kcal Electronic energy + Delta-G solvation = -19528.966134 eV Core-core repulsion = 16929.822326 eV Total energy + Delta-G solvation = -2599.143808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92171 -37.95530 -34.82705 -33.82571 -33.49800 -31.71431 -29.03840 -27.10596 -26.06247 -25.20719 -23.56573 -21.72395 -21.12965 -19.68657 -19.02931 -17.39120 -17.09992 -16.28831 -16.09266 -15.76170 -15.20047 -15.05498 -14.46122 -14.35341 -13.91427 -13.72157 -13.60594 -13.35330 -13.31422 -12.79288 -12.63991 -12.56495 -12.39805 -12.05779 -11.86291 -11.75280 -11.61834 -11.45948 -11.28567 -11.16947 -10.89956 -10.76843 -10.31208 -9.19205 -8.70251 -8.28751 -6.17386 1.33436 1.40460 1.48878 2.38969 3.03946 3.36884 3.47226 3.96885 4.16425 4.27646 4.34887 4.40006 4.48396 4.50909 4.61877 4.66360 4.76157 4.80161 4.86987 4.91032 4.93291 5.07021 5.11075 5.21799 5.22758 5.26816 5.29889 5.37886 5.42194 5.48606 5.57945 5.60359 5.62720 5.81472 5.82878 6.28862 6.32571 6.50149 6.66367 6.75418 6.86246 7.44075 8.84718 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.009232 C = 0.008645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.446490 B = 3032.046155 C = 3238.142208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.188 3.812 4 H 0.021 0.979 5 C -0.546 4.546 6 H 0.065 0.935 7 C 0.036 3.964 8 N -0.925 5.925 9 Si 0.908 3.092 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.235 1.235 13 N -0.526 5.526 14 C 0.039 3.961 15 C 0.095 3.905 16 H 0.091 0.909 17 C -0.100 4.100 18 C -0.108 4.108 19 C 0.067 3.933 20 N -0.699 5.699 21 C 0.083 3.917 22 C -0.166 4.166 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.262 0.738 29 H 0.018 0.982 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.085 0.915 38 H 0.350 0.650 39 H 0.018 0.982 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.903 -0.301 9.739 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.080 3.920 4 H 0.038 0.962 5 C -0.584 4.584 6 H 0.083 0.917 7 C -0.164 4.164 8 N -0.564 5.564 9 Si 0.733 3.267 10 H -0.210 1.210 11 H -0.219 1.219 12 H -0.158 1.158 13 N -0.248 5.248 14 C -0.109 4.109 15 C -0.014 4.014 16 H 0.109 0.891 17 C -0.138 4.138 18 C -0.147 4.147 19 C -0.062 4.062 20 N -0.332 5.332 21 C -0.046 4.046 22 C -0.204 4.204 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.169 0.831 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.712 -0.131 9.096 14.053 hybrid contribution 2.246 -0.250 -0.426 2.300 sum -8.465 -0.380 8.671 12.124 Atomic orbital electron populations 1.21728 0.94994 1.00998 1.01795 1.21984 0.96003 0.97827 1.00044 1.19489 0.91422 0.91058 0.90021 0.96168 1.21924 0.92270 1.35252 1.08955 0.91738 1.25556 0.95095 0.94101 1.01675 1.70192 1.14187 1.38627 1.33361 0.86442 0.81665 0.76948 0.81616 1.21013 1.21913 1.15787 1.62642 1.52209 1.06157 1.03801 1.22169 0.95986 0.92537 1.00236 1.21499 0.93156 0.97114 0.89594 0.89133 1.20536 0.99591 0.98146 0.95543 1.20457 0.97686 0.98579 0.97951 1.21653 0.95838 0.93731 0.95022 1.59019 1.35580 1.10787 1.27813 1.21899 0.90960 0.96468 0.95294 1.22506 1.01495 0.95305 1.01120 0.91416 0.93759 0.92797 0.94658 0.92689 0.92935 0.96311 0.93336 0.91610 0.93631 0.91719 0.90496 0.91965 0.95371 0.89648 0.83126 0.96330 0.93524 0.89296 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 9.32 71.98 0.67 -4.15 16 2 C -0.12 -5.14 4.24 30.59 0.13 -5.01 16 3 C 0.19 8.59 1.72 44.17 0.08 8.67 16 4 H 0.02 0.98 6.95 -2.38 -0.02 0.96 16 5 C -0.55 -28.97 6.77 25.60 0.17 -28.79 16 6 H 0.07 3.72 4.23 -2.91 -0.01 3.71 16 7 C 0.04 2.00 5.21 84.66 0.44 2.44 16 8 N -0.93 -55.35 13.96 21.45 0.30 -55.05 16 9 Si 0.91 43.28 25.89 68.60 1.78 45.06 16 10 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 12 H -0.23 -10.43 5.68 99.48 0.57 -9.87 16 13 N -0.53 -20.95 4.27 -877.83 -3.75 -24.70 16 14 C 0.04 1.53 8.21 127.69 1.05 2.58 16 15 C 0.09 3.40 0.71 44.64 0.03 3.44 16 16 H 0.09 3.47 3.98 -2.39 -0.01 3.46 16 17 C -0.10 -2.91 4.36 28.93 0.13 -2.79 16 18 C -0.11 -2.63 5.37 28.74 0.15 -2.47 16 19 C 0.07 1.60 6.15 87.12 0.54 2.14 16 20 N -0.70 -19.30 6.18 -513.92 -3.17 -22.47 16 21 C 0.08 2.91 6.44 86.41 0.56 3.46 16 22 C -0.17 -6.39 3.26 30.11 0.10 -6.29 16 23 H 0.07 2.30 6.43 -2.38 -0.02 2.28 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.03 1.58 4.88 -2.38 -0.01 1.57 16 27 H 0.05 2.43 6.03 -2.38 -0.01 2.42 16 28 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.02 0.80 4.68 -2.38 -0.01 0.79 16 30 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 31 H 0.07 2.18 7.30 -2.39 -0.02 2.16 16 32 H 0.04 1.32 7.09 -2.38 -0.02 1.30 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.61 8.08 -2.39 -0.02 1.59 16 36 H 0.03 0.73 6.79 -2.39 -0.02 0.72 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.35 8.01 8.89 -89.70 -0.80 7.21 16 39 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.09 4.27 3.20 -2.38 -0.01 4.26 16 42 H 0.04 1.42 6.59 -2.39 -0.02 1.40 16 Total: -1.00 -58.84 290.48 -0.74 -59.57 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.07 Total: 24.38 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 4.04 Total: -26.78 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -6.63 Total: -102.22 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.78 Total: 45.06 kcal Total: -58.84 -0.74 -59.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226466332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.210 kcal (2) G-P(sol) polarization free energy of solvation -58.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds