Wall clock time and date at job start Mon Mar 30 2020 03:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47467 * 2 1 4 4 H 1.08994 * 109.46909 * 178.49299 * 3 2 1 5 5 C 1.50692 * 109.46987 * 298.49197 * 3 2 1 6 6 H 1.07996 * 120.00303 * 119.99716 * 5 3 2 7 7 C 1.37885 * 120.00044 * 299.99899 * 5 3 2 8 8 N 1.31512 * 119.99890 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99797 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47406 * 60.00235 * 9 7 5 11 11 H 1.48510 * 109.46792 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47719 * 299.99987 * 9 7 5 13 13 N 1.46899 * 109.46788 * 58.49005 * 3 2 1 14 14 C 1.46844 * 111.00135 * 53.90902 * 13 3 2 15 15 C 1.53035 * 109.52388 * 185.83393 * 14 13 3 16 16 C 1.53115 * 109.28312 * 300.82042 * 15 14 13 17 17 C 1.53127 * 109.15723 * 57.65410 * 16 15 14 18 18 H 1.08994 * 109.50303 * 62.28410 * 17 16 15 19 19 C 1.53002 * 109.53234 * 182.38883 * 17 16 15 20 20 N 1.46896 * 109.46957 * 294.81863 * 19 17 16 21 21 C 1.46904 * 110.99892 * 180.02562 * 20 19 17 22 22 C 1.46846 * 110.99519 * 178.11627 * 13 3 2 23 23 H 1.09002 * 109.46862 * 65.11546 * 1 2 3 24 24 H 1.08995 * 109.47243 * 185.11885 * 1 2 3 25 25 H 1.09002 * 109.47058 * 305.12107 * 1 2 3 26 26 H 1.08998 * 109.46824 * 239.99845 * 2 1 3 27 27 H 1.09006 * 109.46970 * 120.00066 * 2 1 3 28 28 H 0.96998 * 119.99614 * 180.02562 * 8 7 5 29 29 H 1.09005 * 109.46569 * 305.85450 * 14 13 3 30 30 H 1.09001 * 109.46175 * 65.82048 * 14 13 3 31 31 H 1.09006 * 109.50315 * 180.87553 * 15 14 13 32 32 H 1.09008 * 109.50240 * 60.76243 * 15 14 13 33 33 H 1.08998 * 109.52101 * 297.75124 * 16 15 14 34 34 H 1.09002 * 109.57662 * 177.58590 * 16 15 14 35 35 H 1.08999 * 109.47200 * 54.82346 * 19 17 16 36 36 H 1.09000 * 109.46763 * 174.82199 * 19 17 16 37 37 H 1.00903 * 111.00038 * 303.95842 * 20 19 17 38 38 H 1.08997 * 109.46969 * 300.00127 * 21 20 19 39 39 H 1.08999 * 109.47145 * 60.00346 * 21 20 19 40 40 H 1.09004 * 109.46797 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.46761 * 294.17715 * 22 13 3 42 42 H 1.09001 * 109.46303 * 54.15675 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1297 1.4425 0.0270 5 6 1.5686 2.1420 -1.2487 6 1 0.9456 3.0208 -1.1728 7 6 1.9326 1.6600 -2.4882 8 7 2.6917 0.5900 -2.5806 9 14 1.3487 2.5275 -4.0360 10 1 1.8443 3.9274 -4.0358 11 1 1.8740 1.8171 -5.2297 12 1 -0.1359 2.5281 -4.0731 13 7 1.5209 2.1454 1.1808 14 6 1.8388 1.4114 2.4123 15 6 1.1609 2.0927 3.6032 16 6 1.6544 3.5384 3.7068 17 6 1.3544 4.2671 2.3938 18 1 0.2771 4.2949 2.2310 19 6 1.8974 5.6957 2.4660 20 7 1.1673 6.4454 3.4969 21 6 1.6623 7.8251 3.5943 22 6 2.0269 3.5228 1.2379 23 1 -0.3633 0.4324 -0.9323 24 1 -0.3633 -1.0235 0.0917 25 1 -0.3633 0.5912 0.8406 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.9481 0.2512 -3.4526 29 1 1.4789 0.3860 2.3272 30 1 2.9183 1.4058 2.5633 31 1 1.4098 1.5567 4.5191 32 1 0.0804 2.0864 3.4594 33 1 2.7289 3.5443 3.8894 34 1 1.1425 4.0411 4.5274 35 1 2.9574 5.6692 2.7182 36 1 1.7657 6.1836 1.5003 37 1 0.1739 6.4296 3.3202 38 1 2.7208 7.8137 3.8542 39 1 1.5287 8.3275 2.6363 40 1 1.1050 8.3575 4.3651 41 1 3.1055 3.5073 1.3945 42 1 1.8033 4.0310 0.2999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226677800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:40 Heat of formation + Delta-G solvation = -10.399129 kcal Electronic energy + Delta-G solvation = -18499.843520 eV Core-core repulsion = 15900.004416 eV Total energy + Delta-G solvation = -2599.839104 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.75715 -36.27295 -34.34131 -31.91820 -30.88466 -30.27733 -26.49712 -26.15808 -23.93303 -23.44283 -22.01049 -21.32886 -19.35511 -18.64771 -16.11901 -15.79314 -15.28063 -14.80074 -14.37171 -14.23688 -13.86622 -13.51028 -13.15158 -12.96916 -12.60819 -12.40613 -11.92047 -11.77998 -11.76360 -11.56169 -11.13245 -10.88302 -10.81167 -10.55304 -10.43475 -10.27141 -10.04142 -9.89854 -9.72686 -9.47819 -9.23509 -8.75411 -8.40657 -8.35469 -7.04908 -5.97139 -4.00380 3.32465 3.37343 3.39915 4.27169 4.43227 4.92516 5.23062 5.27369 5.32672 5.36543 5.44763 5.49011 5.67895 5.79391 5.83322 5.93404 6.01764 6.08709 6.24176 6.32529 6.40977 6.45713 6.51162 6.62063 6.64628 6.71996 6.78627 6.86423 6.90580 7.03525 7.17133 7.37390 7.38252 7.47010 7.69802 7.81449 7.87635 8.28322 8.40176 8.67661 9.05088 9.63277 11.09232 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.007349 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.917486 B = 3809.135755 C = 4743.039060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.217 3.783 4 H -0.005 1.005 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.527 5.527 14 C 0.050 3.950 15 C -0.116 4.116 16 C -0.101 4.101 17 C -0.082 4.082 18 H 0.072 0.928 19 C 0.063 3.937 20 N -0.693 5.693 21 C 0.028 3.972 22 C 0.072 3.928 23 H 0.054 0.946 24 H 0.014 0.986 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.014 0.986 28 H 0.260 0.740 29 H 0.073 0.927 30 H 0.015 0.985 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.031 0.969 37 H 0.340 0.660 38 H 0.062 0.938 39 H 0.019 0.981 40 H 0.063 0.937 41 H 0.016 0.984 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 7.171 10.303 12.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.112 3.888 4 H 0.013 0.987 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.252 5.252 14 C -0.079 4.079 15 C -0.154 4.154 16 C -0.139 4.139 17 C -0.101 4.101 18 H 0.091 0.909 19 C -0.067 4.067 20 N -0.323 5.323 21 C -0.122 4.122 22 C -0.057 4.057 23 H 0.073 0.927 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.157 0.843 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.082 0.918 41 H 0.034 0.966 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.236 6.838 10.620 12.827 hybrid contribution 0.334 0.778 -1.697 1.897 sum -1.902 7.616 8.923 11.884 Atomic orbital electron populations 1.21469 0.97304 0.97224 1.01857 1.21605 0.95161 0.98276 1.00084 1.19226 0.92440 0.90762 0.86417 0.98736 1.21019 1.30790 1.11789 0.89655 0.92165 1.24897 0.95289 0.95115 0.98848 1.69867 1.36575 1.22708 1.24122 0.86661 0.79102 0.79566 0.82652 1.20496 1.21432 1.20278 1.61972 1.59916 1.01110 1.02215 1.22100 0.96574 0.98412 0.90764 1.21605 1.00905 0.95747 0.97123 1.21467 1.00193 0.95079 0.97142 1.21218 1.00714 0.92486 0.95717 0.90914 1.22032 0.98397 0.94044 0.92200 1.60422 1.08572 1.13261 1.50090 1.22170 1.01104 0.89265 0.99669 1.21880 0.95199 0.90945 0.97638 0.92731 0.96695 0.93434 0.89053 0.96718 0.93023 0.90854 0.96651 0.92848 0.91722 0.93229 0.91760 0.91345 0.95112 0.84294 0.91956 0.96238 0.91797 0.96582 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.35 37.16 0.35 -2.33 16 2 C -0.11 -2.71 4.95 -26.73 -0.13 -2.84 16 3 C 0.22 5.42 1.76 -68.87 -0.12 5.29 16 4 H 0.00 -0.14 8.14 -51.93 -0.42 -0.56 16 5 C -0.49 -13.20 6.76 -34.44 -0.23 -13.43 16 6 H 0.06 1.62 6.84 -52.49 -0.36 1.26 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.26 11.31 55.43 0.63 -24.63 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.53 -11.17 3.63 -228.08 -0.83 -12.00 16 14 C 0.05 0.93 4.87 -3.84 -0.02 0.91 16 15 C -0.12 -1.79 6.09 -26.65 -0.16 -1.95 16 16 C -0.10 -1.49 5.15 -26.61 -0.14 -1.63 16 17 C -0.08 -1.28 2.49 -90.53 -0.23 -1.51 16 18 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 19 C 0.06 0.86 5.08 -3.83 -0.02 0.84 16 20 N -0.69 -8.29 6.37 -121.13 -0.77 -9.06 16 21 C 0.03 0.28 10.70 60.07 0.64 0.92 16 22 C 0.07 1.41 4.55 -3.83 -0.02 1.39 16 23 H 0.05 1.30 7.45 -51.93 -0.39 0.92 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.05 1.01 7.14 -51.93 -0.37 0.64 16 26 H 0.09 2.45 6.03 -51.93 -0.31 2.13 16 27 H 0.01 0.32 6.29 -51.93 -0.33 -0.01 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 29 H 0.07 1.39 5.72 -51.93 -0.30 1.10 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.89 7.83 -51.93 -0.41 0.49 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.34 3.77 8.81 -39.29 -0.35 3.42 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 1.71 6.42 -51.93 -0.33 1.38 16 LS Contribution 315.93 15.07 4.76 4.76 Total: -1.00 -27.40 315.93 -9.18 -36.58 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.77 Total: 0.95 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -0.17 Total: -12.82 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.97 Total: -45.69 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.40 -9.18 -36.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226677800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.181 kcal (2) G-P(sol) polarization free energy of solvation -27.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds