Wall clock time and date at job start Mon Mar 30 2020 03:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46693 * 2 1 4 4 H 1.08994 * 109.47287 * 304.99724 * 3 2 1 5 5 C 1.50700 * 109.46784 * 184.99903 * 3 2 1 6 6 H 1.08003 * 120.00384 * 240.00146 * 5 3 2 7 7 C 1.37877 * 120.00183 * 60.00098 * 5 3 2 8 8 N 1.31513 * 120.00118 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00086 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47082 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47036 * 119.99744 * 9 7 5 12 12 H 1.48492 * 109.47148 * 239.99851 * 9 7 5 13 13 N 1.46898 * 109.47217 * 64.99929 * 3 2 1 14 14 C 1.46854 * 110.99958 * 65.78691 * 13 3 2 15 15 C 1.53039 * 109.52227 * 185.83752 * 14 13 3 16 16 C 1.53126 * 109.28009 * 300.82107 * 15 14 13 17 17 C 1.53099 * 109.15071 * 57.65227 * 16 15 14 18 18 H 1.09009 * 109.50682 * 62.29317 * 17 16 15 19 19 C 1.53008 * 109.48809 * 182.39661 * 17 16 15 20 20 N 1.46902 * 109.47004 * 294.81560 * 19 17 16 21 21 C 1.46904 * 110.99713 * 180.02562 * 20 19 17 22 22 C 1.46847 * 110.99897 * 189.99553 * 13 3 2 23 23 H 1.08991 * 109.47071 * 299.99913 * 1 2 3 24 24 H 1.08994 * 109.46816 * 60.00555 * 1 2 3 25 25 H 1.09006 * 109.46813 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46978 * 239.99806 * 2 1 3 27 27 H 1.09004 * 109.46755 * 119.99986 * 2 1 3 28 28 H 0.96997 * 120.00182 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.46229 * 305.85774 * 14 13 3 30 30 H 1.09008 * 109.45822 * 65.82829 * 14 13 3 31 31 H 1.08994 * 109.50227 * 60.75933 * 15 14 13 32 32 H 1.09000 * 109.50337 * 180.88158 * 15 14 13 33 33 H 1.08990 * 109.52264 * 177.55890 * 16 15 14 34 34 H 1.09002 * 109.52383 * 297.68676 * 16 15 14 35 35 H 1.09003 * 109.46318 * 54.81092 * 19 17 16 36 36 H 1.08998 * 109.46956 * 174.80974 * 19 17 16 37 37 H 1.00895 * 110.99753 * 303.94681 * 20 19 17 38 38 H 1.09003 * 109.46714 * 299.99789 * 21 20 19 39 39 H 1.08997 * 109.47198 * 59.99497 * 21 20 19 40 40 H 1.08999 * 109.46921 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.46481 * 294.17890 * 22 13 3 42 42 H 1.08994 * 109.46283 * 54.15743 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3367 -2.1728 9 14 6.0050 0.8814 -1.3817 10 1 6.5987 1.5464 -0.1941 11 1 6.4971 -0.5173 -1.4628 12 1 6.3990 1.6168 -2.6101 13 7 1.6513 2.0993 1.2552 14 6 2.3291 1.4835 2.4032 15 6 1.7931 2.0927 3.7007 16 6 2.0394 3.6040 3.6892 17 6 1.3638 4.2136 2.4580 18 1 0.2872 4.0532 2.5167 19 6 1.6553 5.7148 2.4066 20 7 1.0254 6.3755 3.5576 21 6 1.2842 7.8215 3.5410 22 6 1.9123 3.5432 1.1964 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.8294 -0.0611 -2.9498 29 1 2.1426 0.4097 2.4019 30 1 3.4015 1.6658 2.3323 31 1 0.7233 1.8990 3.7789 32 1 2.3075 1.6467 4.5519 33 1 1.6204 4.0482 4.5921 34 1 3.1113 3.7981 3.6514 35 1 2.7327 5.8769 2.4394 36 1 1.2530 6.1316 1.4833 37 1 0.0348 6.1862 3.5857 38 1 2.3590 7.9987 3.5813 39 1 0.8790 8.2526 2.6256 40 1 0.8072 8.2859 4.4041 41 1 2.9866 3.7158 1.1311 42 1 1.4228 3.9653 0.3188 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226677805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:43 Heat of formation + Delta-G solvation = -14.371457 kcal Electronic energy + Delta-G solvation = -18482.793034 eV Core-core repulsion = 15882.781677 eV Total energy + Delta-G solvation = -2600.011357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.72037 -36.26207 -34.23993 -31.86821 -30.77025 -30.55790 -26.60099 -26.09375 -23.94819 -23.18506 -21.97198 -21.36111 -19.29645 -18.80606 -16.23300 -15.84339 -15.12973 -14.79012 -14.39370 -14.27665 -13.76747 -13.33717 -13.16889 -12.90561 -12.60925 -12.56137 -11.96211 -11.76779 -11.58170 -11.28558 -11.24315 -11.04937 -10.84517 -10.64179 -10.42055 -10.28410 -10.00588 -9.94254 -9.62540 -9.54459 -9.17759 -9.00610 -8.41224 -8.33673 -7.03673 -5.96116 -4.09488 3.26236 3.35038 3.38474 4.26880 4.41262 4.96813 5.23992 5.28292 5.28594 5.38036 5.45458 5.54569 5.75035 5.79930 5.83522 6.01591 6.06784 6.20318 6.27288 6.36681 6.42492 6.51044 6.57099 6.61391 6.66154 6.72191 6.83737 6.88731 6.98501 7.06720 7.16938 7.23294 7.37039 7.41913 7.65516 7.80461 8.04541 8.20938 8.39268 8.54241 9.01889 9.58034 11.02612 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022921 B = 0.006972 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.319489 B = 4014.951772 C = 4566.987266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.214 3.786 4 H 0.036 0.964 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.533 5.533 14 C 0.061 3.939 15 C -0.119 4.119 16 C -0.100 4.100 17 C -0.081 4.081 18 H 0.069 0.931 19 C 0.063 3.937 20 N -0.693 5.693 21 C 0.028 3.972 22 C 0.071 3.929 23 H 0.047 0.953 24 H 0.037 0.963 25 H 0.024 0.976 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.339 0.661 38 H 0.062 0.938 39 H 0.018 0.982 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 7.867 8.943 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.257 5.257 14 C -0.067 4.067 15 C -0.157 4.157 16 C -0.138 4.138 17 C -0.100 4.100 18 H 0.088 0.912 19 C -0.067 4.067 20 N -0.323 5.323 21 C -0.122 4.122 22 C -0.058 4.058 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.156 0.844 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.526 7.570 9.243 12.776 hybrid contribution 1.444 0.392 -1.114 1.865 sum -3.082 7.963 8.130 11.789 Atomic orbital electron populations 1.21703 0.98915 0.98337 1.00528 1.21594 0.92213 0.99216 1.01856 1.19264 0.93002 0.91194 0.85817 0.94614 1.21804 0.92968 1.37786 1.05357 0.92512 1.24909 0.97701 0.95122 0.95728 1.69885 1.34621 1.38518 1.09445 0.86651 0.86400 0.77715 0.77916 1.19982 1.21002 1.21080 1.62343 1.57112 1.01405 1.04805 1.21907 0.96559 0.98590 0.89646 1.21665 1.01000 0.95536 0.97504 1.21443 0.99755 0.95104 0.97491 1.21202 1.00512 0.92161 0.96156 0.91231 1.22046 0.99588 0.94562 0.90481 1.60415 1.17805 1.09637 1.44436 1.22171 1.01792 0.88440 0.99796 1.21792 0.98578 0.90081 0.95339 0.93343 0.94337 0.95687 0.89059 0.94894 0.93014 0.91489 0.94644 0.92181 0.92925 0.91939 0.93056 0.91192 0.95331 0.84379 0.91910 0.96294 0.91795 0.94801 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.80 37.16 0.36 -2.46 16 2 C -0.11 -2.63 5.16 -26.73 -0.14 -2.76 16 3 C 0.21 5.25 1.71 -68.87 -0.12 5.13 16 4 H 0.04 0.98 7.99 -51.93 -0.41 0.57 16 5 C -0.54 -14.41 7.23 -34.44 -0.25 -14.66 16 6 H 0.06 1.54 5.84 -52.48 -0.31 1.23 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -24.92 11.29 55.43 0.63 -24.29 16 9 Si 0.88 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 N -0.53 -11.18 4.06 -228.08 -0.93 -12.11 16 14 C 0.06 1.22 4.78 -3.83 -0.02 1.20 16 15 C -0.12 -1.92 6.09 -26.65 -0.16 -2.09 16 16 C -0.10 -1.53 5.14 -26.62 -0.14 -1.67 16 17 C -0.08 -1.25 2.49 -90.55 -0.23 -1.48 16 18 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 19 C 0.06 0.85 5.08 -3.82 -0.02 0.83 16 20 N -0.69 -8.20 6.37 -121.12 -0.77 -8.98 16 21 C 0.03 0.28 10.70 60.07 0.64 0.92 16 22 C 0.07 1.37 4.47 -3.84 -0.02 1.35 16 23 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 27 H 0.03 0.77 6.22 -51.93 -0.32 0.45 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.07 1.37 6.12 -51.93 -0.32 1.06 16 30 H 0.04 0.77 6.37 -51.92 -0.33 0.44 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.89 7.83 -51.93 -0.41 0.49 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.34 3.65 8.81 -39.29 -0.35 3.30 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.03 0.71 7.29 -51.93 -0.38 0.33 16 42 H 0.06 1.15 8.02 -51.93 -0.42 0.74 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -27.18 316.60 -9.23 -36.41 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.74 Total: 1.96 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -0.17 Total: -13.94 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -1.07 Total: -45.37 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.18 -9.23 -36.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226677805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.042 kcal (2) G-P(sol) polarization free energy of solvation -27.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds