Wall clock time and date at job start Mon Mar 30 2020 03:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46693 * 2 1 4 4 H 1.08994 * 109.47287 * 304.99724 * 3 2 1 5 5 C 1.50700 * 109.46784 * 184.99903 * 3 2 1 6 6 H 1.08003 * 120.00384 * 240.00146 * 5 3 2 7 7 C 1.37877 * 120.00183 * 60.00098 * 5 3 2 8 8 N 1.31513 * 120.00118 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00086 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47082 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47036 * 119.99744 * 9 7 5 12 12 H 1.48492 * 109.47148 * 239.99851 * 9 7 5 13 13 N 1.46898 * 109.47217 * 64.99929 * 3 2 1 14 14 C 1.46854 * 110.99958 * 65.78691 * 13 3 2 15 15 C 1.53039 * 109.52227 * 185.83752 * 14 13 3 16 16 C 1.53126 * 109.28009 * 300.82107 * 15 14 13 17 17 C 1.53099 * 109.15071 * 57.65227 * 16 15 14 18 18 H 1.09009 * 109.50682 * 62.29317 * 17 16 15 19 19 C 1.53008 * 109.48809 * 182.39661 * 17 16 15 20 20 N 1.46902 * 109.47004 * 294.81560 * 19 17 16 21 21 C 1.46904 * 110.99713 * 180.02562 * 20 19 17 22 22 C 1.46847 * 110.99897 * 189.99553 * 13 3 2 23 23 H 1.08991 * 109.47071 * 299.99913 * 1 2 3 24 24 H 1.08994 * 109.46816 * 60.00555 * 1 2 3 25 25 H 1.09006 * 109.46813 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46978 * 239.99806 * 2 1 3 27 27 H 1.09004 * 109.46755 * 119.99986 * 2 1 3 28 28 H 0.96997 * 120.00182 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.46229 * 305.85774 * 14 13 3 30 30 H 1.09008 * 109.45822 * 65.82829 * 14 13 3 31 31 H 1.08994 * 109.50227 * 60.75933 * 15 14 13 32 32 H 1.09000 * 109.50337 * 180.88158 * 15 14 13 33 33 H 1.08990 * 109.52264 * 177.55890 * 16 15 14 34 34 H 1.09002 * 109.52383 * 297.68676 * 16 15 14 35 35 H 1.09003 * 109.46318 * 54.81092 * 19 17 16 36 36 H 1.08998 * 109.46956 * 174.80974 * 19 17 16 37 37 H 1.00895 * 110.99753 * 303.94681 * 20 19 17 38 38 H 1.09003 * 109.46714 * 299.99789 * 21 20 19 39 39 H 1.08997 * 109.47198 * 59.99497 * 21 20 19 40 40 H 1.08999 * 109.46921 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.46481 * 294.17890 * 22 13 3 42 42 H 1.08994 * 109.46283 * 54.15743 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3367 -2.1728 9 14 6.0050 0.8814 -1.3817 10 1 6.5987 1.5464 -0.1941 11 1 6.4971 -0.5173 -1.4628 12 1 6.3990 1.6168 -2.6101 13 7 1.6513 2.0993 1.2552 14 6 2.3291 1.4835 2.4032 15 6 1.7931 2.0927 3.7007 16 6 2.0394 3.6040 3.6892 17 6 1.3638 4.2136 2.4580 18 1 0.2872 4.0532 2.5167 19 6 1.6553 5.7148 2.4066 20 7 1.0254 6.3755 3.5576 21 6 1.2842 7.8215 3.5410 22 6 1.9123 3.5432 1.1964 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.8294 -0.0611 -2.9498 29 1 2.1426 0.4097 2.4019 30 1 3.4015 1.6658 2.3323 31 1 0.7233 1.8990 3.7789 32 1 2.3075 1.6467 4.5519 33 1 1.6204 4.0482 4.5921 34 1 3.1113 3.7981 3.6514 35 1 2.7327 5.8769 2.4394 36 1 1.2530 6.1316 1.4833 37 1 0.0348 6.1862 3.5857 38 1 2.3590 7.9987 3.5813 39 1 0.8790 8.2526 2.6256 40 1 0.8072 8.2859 4.4041 41 1 2.9866 3.7158 1.1311 42 1 1.4228 3.9653 0.3188 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226677805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:43 Heat of formation + Delta-G solvation = -31.551593 kcal Electronic energy + Delta-G solvation = -18483.538021 eV Core-core repulsion = 15882.781677 eV Total energy + Delta-G solvation = -2600.756343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.24991 -37.58663 -35.75406 -33.79646 -32.24333 -32.09562 -28.47279 -27.28918 -25.62207 -24.50300 -23.54584 -22.76222 -20.83274 -20.54993 -18.22498 -17.25683 -16.58692 -16.14328 -16.06766 -15.47277 -15.16714 -14.97225 -14.72906 -14.34441 -14.21427 -13.88211 -13.49714 -13.16785 -13.06247 -12.82560 -12.76872 -12.69995 -12.54984 -12.30080 -12.10803 -11.81367 -11.66457 -11.51867 -11.44245 -11.12337 -10.94097 -10.74014 -10.42108 -9.35202 -8.87948 -8.02574 -6.25610 1.33682 1.36925 1.46337 2.38906 3.13566 3.21316 3.57746 3.96256 4.06721 4.18876 4.39099 4.50141 4.54288 4.61790 4.64767 4.69583 4.75670 4.77358 4.80676 4.88136 4.92879 5.05541 5.06853 5.09994 5.11984 5.27228 5.31703 5.36882 5.43398 5.49148 5.54248 5.59270 5.68808 5.81107 6.04121 6.09794 6.22983 6.42420 6.51156 6.74057 6.97331 7.45251 8.91684 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022921 B = 0.006972 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.319489 B = 4014.951772 C = 4566.987266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.549 4.549 6 H 0.047 0.953 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.281 1.281 13 N -0.528 5.528 14 C 0.064 3.936 15 C -0.110 4.110 16 C -0.094 4.094 17 C -0.069 4.069 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.695 5.695 21 C 0.027 3.973 22 C 0.073 3.927 23 H 0.058 0.942 24 H 0.031 0.969 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.058 0.942 30 H 0.010 0.990 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.028 0.972 37 H 0.348 0.652 38 H 0.059 0.941 39 H 0.022 0.978 40 H 0.082 0.918 41 H 0.009 0.991 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.114 8.602 10.682 14.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.588 4.588 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.207 1.207 13 N -0.251 5.251 14 C -0.065 4.065 15 C -0.148 4.148 16 C -0.131 4.131 17 C -0.088 4.088 18 H 0.095 0.905 19 C -0.058 4.058 20 N -0.326 5.326 21 C -0.122 4.122 22 C -0.056 4.056 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.166 0.834 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.101 0.899 41 H 0.027 0.973 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.083 8.316 10.998 14.695 hybrid contribution 1.607 0.187 -1.656 2.315 sum -3.476 8.503 9.342 13.102 Atomic orbital electron populations 1.21558 0.96229 0.99784 1.00649 1.21435 0.94571 0.98130 1.00240 1.19049 0.91703 0.91634 0.86473 0.98105 1.22006 0.94215 1.37441 1.05106 0.93513 1.25589 1.01631 0.95004 0.95577 1.70004 1.36097 1.39097 1.09817 0.85729 0.81697 0.77785 0.77759 1.19926 1.20457 1.20675 1.62327 1.56803 1.02249 1.03742 1.21927 0.95141 0.98396 0.91014 1.21612 1.01555 0.95919 0.95690 1.21400 0.99162 0.94530 0.98030 1.21069 1.00548 0.93144 0.94044 0.90493 1.21849 0.99253 0.93337 0.91385 1.60376 1.18375 1.10782 1.43100 1.22224 1.01870 0.87248 1.00855 1.21821 0.97144 0.89291 0.97337 0.92346 0.94966 0.93570 0.92057 0.94986 0.92954 0.92392 0.97200 0.91185 0.90930 0.89845 0.94151 0.92126 0.95428 0.83435 0.92256 0.95910 0.89935 0.97301 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.80 71.98 0.71 -4.34 16 2 C -0.11 -5.08 5.16 30.60 0.16 -4.93 16 3 C 0.22 11.06 1.71 44.17 0.08 11.14 16 4 H 0.00 0.06 7.99 -2.39 -0.02 0.04 16 5 C -0.55 -30.12 7.23 25.60 0.19 -29.94 16 6 H 0.05 2.62 5.84 -2.91 -0.02 2.60 16 7 C 0.02 1.20 5.29 84.65 0.45 1.65 16 8 N -0.91 -52.41 11.29 21.45 0.24 -52.17 16 9 Si 0.94 44.17 29.54 68.60 2.03 46.19 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.53 -22.33 4.06 -875.51 -3.55 -25.88 16 14 C 0.06 2.50 4.78 86.32 0.41 2.91 16 15 C -0.11 -3.31 6.09 30.65 0.19 -3.12 16 16 C -0.09 -2.66 5.14 30.67 0.16 -2.50 16 17 C -0.07 -2.03 2.49 -10.75 -0.03 -2.06 16 18 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 19 C 0.07 1.84 5.08 86.31 0.44 2.28 16 20 N -0.70 -14.68 6.37 -537.12 -3.42 -18.10 16 21 C 0.03 0.48 10.70 127.69 1.37 1.84 16 22 C 0.07 2.85 4.47 86.32 0.39 3.23 16 23 H 0.06 2.22 7.75 -2.39 -0.02 2.21 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.06 3.34 5.95 -2.39 -0.01 3.33 16 27 H 0.03 1.51 6.22 -2.39 -0.01 1.50 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.06 2.36 6.12 -2.39 -0.01 2.35 16 30 H 0.01 0.43 6.37 -2.38 -0.02 0.42 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 33 H 0.08 2.09 7.83 -2.39 -0.02 2.07 16 34 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.35 6.43 8.81 -89.70 -0.79 5.64 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.01 0.38 7.29 -2.39 -0.02 0.36 16 42 H 0.05 1.96 8.02 -2.39 -0.02 1.94 16 Total: -1.00 -58.91 316.60 -0.04 -58.95 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.18 Total: 14.84 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 4.49 Total: -23.82 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -6.73 Total: -96.15 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -58.91 -0.04 -58.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226677805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.394 kcal (2) G-P(sol) polarization free energy of solvation -58.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds