Wall clock time and date at job start Mon Mar 30 2020 03:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47285 * 2 1 4 4 H 1.09003 * 109.47344 * 55.42081 * 3 2 1 5 5 C 1.50701 * 109.47429 * 175.42078 * 3 2 1 6 6 H 1.07997 * 119.99775 * 119.99298 * 5 3 2 7 7 C 1.37871 * 119.99746 * 300.00320 * 5 3 2 8 8 N 1.31523 * 119.99853 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 120.00185 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46712 * 90.00450 * 9 7 5 11 11 H 1.48498 * 109.47163 * 210.00277 * 9 7 5 12 12 H 1.48491 * 109.47027 * 330.00641 * 9 7 5 13 13 N 1.46900 * 109.47053 * 295.42036 * 3 2 1 14 14 C 1.46895 * 111.00133 * 152.29960 * 13 3 2 15 15 H 1.08993 * 109.52763 * 328.36516 * 14 13 3 16 16 C 1.53126 * 109.57292 * 88.52597 * 14 13 3 17 17 C 1.53035 * 109.27714 * 177.59171 * 16 14 13 18 18 N 1.46852 * 109.52363 * 300.81721 * 17 16 14 19 19 C 1.46897 * 110.99733 * 185.83955 * 18 17 16 20 20 C 1.46847 * 111.19437 * 61.74667 * 18 17 16 21 21 H 1.08991 * 109.46706 * 58.27569 * 20 18 17 22 22 C 1.53004 * 109.46028 * 178.24072 * 20 18 17 23 23 C 1.53031 * 109.52363 * 298.25343 * 20 18 17 24 24 H 1.08999 * 109.47300 * 178.06997 * 1 2 3 25 25 H 1.08998 * 109.47383 * 298.06970 * 1 2 3 26 26 H 1.09005 * 109.47460 * 58.06922 * 1 2 3 27 27 H 1.08996 * 109.47145 * 239.99633 * 2 1 3 28 28 H 1.09000 * 109.46513 * 119.99866 * 2 1 3 29 29 H 0.96995 * 119.99809 * 179.97438 * 8 7 5 30 30 H 1.00904 * 111.00074 * 28.35166 * 13 3 2 31 31 H 1.09001 * 109.49975 * 297.53150 * 16 14 13 32 32 H 1.08996 * 109.50198 * 57.60808 * 16 14 13 33 33 H 1.08999 * 109.46148 * 180.80610 * 17 16 14 34 34 H 1.08999 * 109.46845 * 60.83451 * 17 16 14 35 35 H 1.08997 * 109.47453 * 295.79138 * 19 18 17 36 36 H 1.09009 * 109.46841 * 175.79254 * 19 18 17 37 37 H 1.08997 * 109.47388 * 55.79759 * 19 18 17 38 38 H 1.09003 * 109.46875 * 59.99559 * 22 20 18 39 39 H 1.08997 * 109.46993 * 179.97438 * 22 20 18 40 40 H 1.09002 * 109.46971 * 300.00167 * 22 20 18 41 41 H 1.09001 * 109.51072 * 179.12404 * 23 20 18 42 42 H 1.09007 * 109.50869 * 299.24614 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6112 1.9795 0.8461 5 6 3.5427 1.4440 0.1134 6 1 4.1426 1.8904 -0.6658 7 6 4.1517 0.8754 1.2119 8 7 5.4632 0.8763 1.3107 9 14 3.1140 0.1037 2.5600 10 1 2.8901 -1.3317 2.2518 11 1 3.8208 0.2264 3.8602 12 1 1.8063 0.8027 2.6395 13 7 1.6427 2.1023 -1.2509 14 6 1.5029 3.5521 -1.0600 15 1 1.1709 3.7551 -0.0419 16 6 2.8521 4.2340 -1.3040 17 6 2.6854 5.7487 -1.1624 18 7 1.6927 6.2261 -2.1336 19 6 1.6077 7.6926 -2.1217 20 6 0.3773 5.6207 -1.8894 21 1 0.0511 5.8568 -0.8766 22 6 -0.6343 6.1773 -2.8933 23 6 0.4750 4.1022 -2.0527 24 1 -0.3634 -1.0271 -0.0346 25 1 -0.3634 0.4835 0.9068 26 1 -0.3634 0.5435 -0.8722 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 5.8916 0.4766 2.0837 30 1 0.7916 1.7020 -1.6164 31 1 3.5774 3.8778 -0.5725 32 1 3.2026 3.9982 -2.3087 33 1 3.6411 6.2382 -1.3496 34 1 2.3484 5.9843 -0.1530 35 1 1.2435 8.0276 -1.1505 36 1 0.9208 8.0230 -2.9009 37 1 2.5954 8.1153 -2.3049 38 1 -0.3081 5.9417 -3.9063 39 1 -1.6106 5.7277 -2.7125 40 1 -0.7046 7.2588 -2.7765 41 1 -0.4979 3.6517 -1.8562 42 1 0.7879 3.8648 -3.0695 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226830699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:29 Heat of formation + Delta-G solvation = 1.309231 kcal Electronic energy + Delta-G solvation = -18545.084729 eV Core-core repulsion = 15945.753338 eV Total energy + Delta-G solvation = -2599.331391 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.17708 -36.57028 -33.43750 -32.20053 -31.93717 -29.76081 -27.54645 -26.34312 -25.32728 -22.72256 -22.26430 -20.69904 -19.66978 -19.25747 -16.64419 -15.66446 -15.28075 -15.09236 -14.80118 -14.17578 -14.02830 -13.54319 -13.46646 -12.89758 -12.64453 -12.35876 -12.06135 -11.97568 -11.88566 -11.76991 -11.61046 -11.35789 -11.00680 -10.72579 -10.68664 -10.51685 -10.32745 -10.17273 -9.82033 -9.69465 -9.33130 -9.04879 -8.47485 -8.12570 -7.32628 -6.00332 -3.96071 3.27085 3.37646 3.39425 4.07851 4.43470 4.81876 5.01468 5.21174 5.22973 5.27921 5.40347 5.51773 5.58240 5.67060 5.71785 5.75643 5.82043 5.84668 5.87990 5.91716 5.97876 5.99100 6.09607 6.21774 6.23838 6.44998 6.47352 6.51781 6.64523 6.73814 6.77768 6.90687 7.13099 7.25290 7.32214 7.39006 7.77388 8.06560 8.34125 8.81703 9.13073 9.63372 11.12738 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029021 B = 0.007055 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.577926 B = 3967.694347 C = 4611.245301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.137 4.137 3 C 0.189 3.811 4 H 0.000 1.000 5 C -0.490 4.490 6 H 0.086 0.914 7 C 0.065 3.935 8 N -0.902 5.902 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.298 1.298 12 H -0.270 1.270 13 N -0.670 5.670 14 C 0.099 3.901 15 H 0.030 0.970 16 C -0.104 4.104 17 C 0.056 3.944 18 N -0.537 5.537 19 C 0.022 3.978 20 C 0.085 3.915 21 H 0.035 0.965 22 C -0.146 4.146 23 C -0.115 4.115 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.262 0.738 30 H 0.319 0.681 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.027 0.973 35 H 0.019 0.981 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.450 8.927 -5.281 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.175 4.175 3 C 0.080 3.920 4 H 0.017 0.983 5 C -0.529 4.529 6 H 0.104 0.896 7 C -0.136 4.136 8 N -0.541 5.541 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.226 1.226 12 H -0.195 1.195 13 N -0.301 5.301 14 C -0.011 4.011 15 H 0.048 0.952 16 C -0.142 4.142 17 C -0.072 4.072 18 N -0.262 5.262 19 C -0.126 4.126 20 C -0.024 4.024 21 H 0.053 0.947 22 C -0.204 4.204 23 C -0.153 4.153 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.496 8.758 -5.862 14.874 hybrid contribution -1.556 -0.244 2.252 2.748 sum -12.052 8.514 -3.610 15.191 Atomic orbital electron populations 1.21910 0.98286 1.00486 1.00689 1.22146 0.92902 1.00672 1.01765 1.19716 0.96941 0.89108 0.86203 0.98287 1.21102 0.88973 1.36662 1.06154 0.89637 1.24967 0.94702 0.96123 0.97762 1.69887 1.08267 1.45962 1.29959 0.86983 0.80581 0.79840 0.81527 1.20675 1.22609 1.19489 1.60547 1.36712 1.01495 1.31393 1.21430 0.94734 0.89202 0.95733 0.95167 1.21672 0.98039 0.90670 1.03811 1.22200 0.94892 0.97677 0.92425 1.61997 1.07203 1.05879 1.51158 1.22403 1.02025 0.88437 0.99769 1.21552 0.88863 0.94968 0.97022 0.94730 1.21916 0.98009 1.00411 1.00025 1.21887 0.98468 0.93427 1.01510 0.93616 0.93747 0.93130 0.91319 0.92918 0.92833 0.86263 0.88964 0.91192 0.90971 0.95504 0.96224 0.91359 0.91658 0.91734 0.92478 0.92760 0.92473 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.78 37.16 0.36 -2.32 16 2 C -0.14 -2.93 5.01 -26.73 -0.13 -3.07 16 3 C 0.19 4.40 1.63 -68.87 -0.11 4.29 16 4 H 0.00 -0.01 6.40 -51.93 -0.33 -0.34 16 5 C -0.49 -13.58 8.09 -34.44 -0.28 -13.86 16 6 H 0.09 2.60 7.14 -52.49 -0.37 2.22 16 7 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 8 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 9 Si 0.88 21.99 24.41 -169.99 -4.15 17.84 16 10 H -0.28 -6.83 6.83 56.52 0.39 -6.44 16 11 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 12 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 13 N -0.67 -13.55 6.17 -100.82 -0.62 -14.18 16 14 C 0.10 1.82 2.57 -67.59 -0.17 1.65 16 15 H 0.03 0.60 7.34 -51.93 -0.38 0.22 16 16 C -0.10 -1.96 5.24 -26.65 -0.14 -2.10 16 17 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 18 N -0.54 -7.63 4.75 -234.93 -1.12 -8.75 16 19 C 0.02 0.25 9.05 60.06 0.54 0.80 16 20 C 0.08 1.15 2.44 -67.72 -0.17 0.98 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 C -0.15 -1.58 8.76 37.16 0.33 -1.25 16 23 C -0.11 -1.70 4.61 -26.65 -0.12 -1.82 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.77 6.36 -51.93 -0.33 0.44 16 27 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.05 1.22 3.22 -51.93 -0.17 1.05 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.32 5.73 5.99 -39.29 -0.24 5.50 16 31 H 0.09 2.06 6.28 -51.93 -0.33 1.73 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.69 6.21 -51.92 -0.32 0.37 16 37 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.53 6.33 -51.93 -0.33 0.20 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 LS Contribution 307.15 15.07 4.63 4.63 Total: -1.00 -29.42 307.15 -7.97 -37.39 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.47 Total: 3.88 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -0.01 Total: -14.06 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.96 Total: -49.67 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.15 Total: 17.84 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.42 -7.97 -37.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226830699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.698 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds