Wall clock time and date at job start Mon Mar 30 2020 03:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47077 * 2 1 4 4 H 1.08999 * 109.46808 * 179.61016 * 3 2 1 5 5 C 1.50699 * 109.47122 * 299.60986 * 3 2 1 6 6 H 1.08006 * 119.99191 * 116.21091 * 5 3 2 7 7 C 1.37871 * 120.00323 * 296.21470 * 5 3 2 8 8 N 1.31512 * 120.00082 * 353.06899 * 7 5 3 9 9 Si 1.86800 * 119.99984 * 173.07524 * 7 5 3 10 10 H 1.48500 * 109.46966 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47112 * 299.99452 * 9 7 5 12 12 H 1.48498 * 109.47294 * 59.99356 * 9 7 5 13 13 N 1.46894 * 109.47132 * 59.61441 * 3 2 1 14 14 C 1.48533 * 111.00317 * 59.79828 * 13 3 2 15 15 C 1.54933 * 103.23266 * 159.72023 * 14 13 3 16 16 H 1.08997 * 110.88022 * 81.01019 * 15 14 13 17 17 C 1.52996 * 110.72668 * 204.22960 * 15 14 13 18 18 C 1.54605 * 102.92001 * 322.59024 * 15 14 13 19 19 H 1.09003 * 110.38865 * 262.99530 * 18 15 14 20 20 N 1.46894 * 110.30976 * 140.87465 * 18 15 14 21 21 C 1.46891 * 111.00446 * 56.45261 * 20 18 15 22 22 C 1.46901 * 111.00028 * 180.40955 * 20 18 15 23 23 C 1.47905 * 111.00028 * 177.19333 * 13 3 2 24 24 H 1.09004 * 109.47349 * 185.33172 * 1 2 3 25 25 H 1.09006 * 109.46846 * 305.32978 * 1 2 3 26 26 H 1.09002 * 109.47093 * 65.32737 * 1 2 3 27 27 H 1.08998 * 109.47007 * 240.00099 * 2 1 3 28 28 H 1.09004 * 109.46842 * 120.00251 * 2 1 3 29 29 H 0.97004 * 120.00213 * 355.47942 * 8 7 5 30 30 H 1.09003 * 110.66806 * 278.16026 * 14 13 3 31 31 H 1.09002 * 110.66786 * 41.28450 * 14 13 3 32 32 H 1.09006 * 109.47016 * 173.50074 * 17 15 14 33 33 H 1.08992 * 109.47130 * 293.49589 * 17 15 14 34 34 H 1.09001 * 109.47445 * 53.50270 * 17 15 14 35 35 H 1.08997 * 109.47410 * 59.99961 * 21 20 18 36 36 H 1.09002 * 109.47409 * 180.02562 * 21 20 18 37 37 H 1.09007 * 109.47161 * 300.00195 * 21 20 18 38 38 H 1.09002 * 109.47611 * 65.67122 * 22 20 18 39 39 H 1.08997 * 109.47401 * 185.67934 * 22 20 18 40 40 H 1.09004 * 109.46907 * 305.67923 * 22 20 18 41 41 H 1.08997 * 109.91488 * 333.51164 * 23 13 3 42 42 H 1.09002 * 109.91223 * 94.60842 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0070 5 6 1.5456 2.1501 -1.2353 6 1 0.8745 2.9914 -1.1434 7 6 1.9498 1.7235 -2.4825 8 7 2.8699 0.7903 -2.5920 9 14 1.1905 2.4713 -4.0167 10 1 1.7923 1.8461 -5.2218 11 1 -0.2746 2.2293 -4.0123 12 1 1.4507 3.9331 -4.0357 13 7 1.5427 2.1377 1.1947 14 6 2.0071 1.4642 2.4344 15 6 1.8629 2.5673 3.5127 16 1 0.8320 2.6396 3.8590 17 6 2.8090 2.3047 4.6860 18 6 2.2758 3.8491 2.7532 19 1 3.3219 4.0855 2.9478 20 7 1.4178 4.9743 3.1478 21 6 1.4607 5.1847 4.6009 22 6 1.7910 6.1989 2.4273 23 6 2.0710 3.5175 1.2634 24 1 -0.3634 -1.0232 0.0955 25 1 -0.3633 0.5943 0.8385 26 1 -0.3633 0.4290 -0.9339 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.3112 0.4488 -1.7986 30 1 1.3713 0.6106 2.6698 31 1 3.0478 1.1547 2.3375 32 1 2.7759 3.1485 5.3753 33 1 2.4998 1.3983 5.2062 34 1 3.8255 2.1805 4.3124 35 1 2.4841 5.4017 4.9066 36 1 0.8165 6.0231 4.8659 37 1 1.1128 4.2851 5.1088 38 1 1.5881 6.0711 1.3640 39 1 1.2092 7.0373 2.8101 40 1 2.8530 6.3969 2.5732 41 1 3.0226 3.5774 0.7353 42 1 1.3562 4.2111 0.8205 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227222454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:50 Heat of formation + Delta-G solvation = 4.580815 kcal Electronic energy + Delta-G solvation = -18809.159820 eV Core-core repulsion = 16209.970296 eV Total energy + Delta-G solvation = -2599.189525 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.33375 -36.48570 -34.19911 -31.88272 -30.92230 -28.24382 -27.18108 -26.57531 -24.64989 -23.66467 -22.44951 -20.68196 -19.46647 -19.11716 -16.55866 -16.35226 -15.04164 -14.63629 -14.22505 -13.94891 -13.81803 -13.63564 -12.99717 -12.88735 -12.57978 -12.29868 -12.18471 -12.04898 -11.87522 -11.53502 -11.20299 -11.13705 -10.83698 -10.75991 -10.56349 -10.44046 -10.17719 -10.06254 -10.03281 -9.79291 -9.58557 -8.40255 -8.33570 -8.15949 -7.26484 -6.28067 -3.97783 3.46955 3.49495 3.67547 4.10150 4.55878 4.81731 4.92987 5.08118 5.25068 5.38038 5.41671 5.48216 5.57249 5.61397 5.66135 5.74065 5.81948 5.89872 5.95383 6.05196 6.10678 6.25002 6.27217 6.33254 6.40695 6.45151 6.57454 6.57705 6.70286 6.95589 7.06995 7.20747 7.22010 7.33333 7.41562 7.55877 7.87351 8.10075 8.38986 8.65816 8.93342 9.70934 11.07630 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026150 B = 0.007624 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.496922 B = 3671.823646 C = 4343.660863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.113 4.113 3 C 0.197 3.803 4 H -0.013 1.013 5 C -0.574 4.574 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 1.063 2.937 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.290 1.290 13 N -0.495 5.495 14 C 0.040 3.960 15 C -0.090 4.090 16 H 0.089 0.911 17 C -0.146 4.146 18 C 0.075 3.925 19 H 0.038 0.962 20 N -0.533 5.533 21 C 0.024 3.976 22 C 0.023 3.977 23 C 0.065 3.935 24 H 0.017 0.983 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.020 0.980 29 H 0.268 0.732 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.019 0.981 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.020 0.980 41 H 0.038 0.962 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 5.665 12.617 13.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.090 3.910 4 H 0.005 0.995 5 C -0.613 4.613 6 H 0.073 0.927 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.892 3.108 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.219 5.219 14 C -0.089 4.089 15 C -0.109 4.109 16 H 0.107 0.893 17 C -0.204 4.204 18 C -0.034 4.034 19 H 0.056 0.944 20 N -0.257 5.257 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.064 4.064 24 H 0.036 0.964 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.056 0.944 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.982 5.451 10.758 12.222 hybrid contribution 1.856 0.310 1.908 2.679 sum -0.126 5.761 12.666 13.915 Atomic orbital electron populations 1.21437 0.96257 0.97587 1.02484 1.21581 0.96521 0.98128 0.98961 1.19577 0.91982 0.91130 0.88308 0.99537 1.21806 1.31031 1.17436 0.90986 0.92691 1.25681 0.95807 0.95742 1.01136 1.70794 1.23630 1.27398 1.33374 0.83628 0.75910 0.75487 0.75782 1.20992 1.21373 1.21648 1.64772 1.55013 1.00698 1.01433 1.23191 0.97904 0.96631 0.91150 1.22143 1.00171 0.94005 0.94590 0.89285 1.21899 0.99321 1.01269 0.97897 1.22726 0.93194 0.90574 0.96858 0.94380 1.62068 1.53470 1.04837 1.05294 1.22443 0.99220 1.01987 0.88830 1.22410 0.98069 0.91716 1.00332 1.22621 0.98826 0.92958 0.91982 0.96362 0.92912 0.92306 0.91684 0.96140 0.92037 0.90864 0.95064 0.92828 0.92503 0.92991 0.96271 0.91890 0.91083 0.90658 0.91807 0.96094 0.94402 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.48 37.16 0.35 -2.32 16 2 C -0.11 -2.69 5.09 -26.73 -0.14 -2.82 16 3 C 0.20 4.92 1.08 -68.87 -0.07 4.85 16 4 H -0.01 -0.35 7.40 -51.93 -0.38 -0.73 16 5 C -0.57 -15.75 6.89 -34.44 -0.24 -15.99 16 6 H 0.05 1.55 7.56 -52.48 -0.40 1.15 16 7 C 0.02 0.56 5.23 -17.82 -0.09 0.47 16 8 N -0.91 -27.16 12.83 55.43 0.71 -26.45 16 9 Si 1.06 25.26 29.91 -169.99 -5.08 20.18 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.49 -10.72 4.23 -223.89 -0.95 -11.67 16 14 C 0.04 0.73 4.85 -1.90 -0.01 0.72 16 15 C -0.09 -1.37 2.43 -88.76 -0.22 -1.59 16 16 H 0.09 1.40 7.43 -51.93 -0.39 1.01 16 17 C -0.15 -1.80 8.90 37.16 0.33 -1.47 16 18 C 0.08 1.22 2.31 -66.36 -0.15 1.07 16 19 H 0.04 0.62 7.85 -51.93 -0.41 0.21 16 20 N -0.53 -7.85 4.79 -241.54 -1.16 -9.01 16 21 C 0.02 0.28 8.35 60.06 0.50 0.78 16 22 C 0.02 0.30 9.27 60.06 0.56 0.86 16 23 C 0.06 1.31 5.10 -2.75 -0.01 1.29 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 1.14 7.43 -51.93 -0.39 0.76 16 26 H 0.06 1.42 7.42 -51.93 -0.39 1.03 16 27 H 0.06 1.69 6.19 -51.93 -0.32 1.37 16 28 H 0.02 0.44 6.95 -51.93 -0.36 0.08 16 29 H 0.27 7.97 6.09 -40.82 -0.25 7.72 16 30 H 0.07 1.31 7.67 -51.93 -0.40 0.91 16 31 H 0.03 0.59 7.88 -51.93 -0.41 0.18 16 32 H 0.05 0.59 6.36 -51.93 -0.33 0.26 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.02 0.21 8.08 -51.93 -0.42 -0.21 16 36 H 0.06 0.66 8.06 -51.93 -0.42 0.24 16 37 H 0.07 0.81 5.83 -51.93 -0.30 0.51 16 38 H 0.07 1.08 6.71 -51.93 -0.35 0.74 16 39 H 0.06 0.72 8.02 -51.93 -0.42 0.31 16 40 H 0.02 0.26 8.12 -51.93 -0.42 -0.16 16 41 H 0.04 0.83 7.69 -51.93 -0.40 0.43 16 42 H 0.08 1.71 6.51 -51.93 -0.34 1.38 16 LS Contribution 311.70 15.07 4.70 4.70 Total: -1.00 -29.14 311.70 -8.51 -37.65 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.54 Total: -1.25 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 0.81 Total: -14.16 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -1.39 Total: -47.12 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.14 -8.51 -37.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227222454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.234 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds