Wall clock time and date at job start Mon Mar 30 2020 03:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47077 * 2 1 4 4 H 1.08999 * 109.46808 * 179.61016 * 3 2 1 5 5 C 1.50699 * 109.47122 * 299.60986 * 3 2 1 6 6 H 1.08006 * 119.99191 * 116.21091 * 5 3 2 7 7 C 1.37871 * 120.00323 * 296.21470 * 5 3 2 8 8 N 1.31512 * 120.00082 * 353.06899 * 7 5 3 9 9 Si 1.86800 * 119.99984 * 173.07524 * 7 5 3 10 10 H 1.48500 * 109.46966 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47112 * 299.99452 * 9 7 5 12 12 H 1.48498 * 109.47294 * 59.99356 * 9 7 5 13 13 N 1.46894 * 109.47132 * 59.61441 * 3 2 1 14 14 C 1.48533 * 111.00317 * 59.79828 * 13 3 2 15 15 C 1.54933 * 103.23266 * 159.72023 * 14 13 3 16 16 H 1.08997 * 110.88022 * 81.01019 * 15 14 13 17 17 C 1.52996 * 110.72668 * 204.22960 * 15 14 13 18 18 C 1.54605 * 102.92001 * 322.59024 * 15 14 13 19 19 H 1.09003 * 110.38865 * 262.99530 * 18 15 14 20 20 N 1.46894 * 110.30976 * 140.87465 * 18 15 14 21 21 C 1.46891 * 111.00446 * 56.45261 * 20 18 15 22 22 C 1.46901 * 111.00028 * 180.40955 * 20 18 15 23 23 C 1.47905 * 111.00028 * 177.19333 * 13 3 2 24 24 H 1.09004 * 109.47349 * 185.33172 * 1 2 3 25 25 H 1.09006 * 109.46846 * 305.32978 * 1 2 3 26 26 H 1.09002 * 109.47093 * 65.32737 * 1 2 3 27 27 H 1.08998 * 109.47007 * 240.00099 * 2 1 3 28 28 H 1.09004 * 109.46842 * 120.00251 * 2 1 3 29 29 H 0.97004 * 120.00213 * 355.47942 * 8 7 5 30 30 H 1.09003 * 110.66806 * 278.16026 * 14 13 3 31 31 H 1.09002 * 110.66786 * 41.28450 * 14 13 3 32 32 H 1.09006 * 109.47016 * 173.50074 * 17 15 14 33 33 H 1.08992 * 109.47130 * 293.49589 * 17 15 14 34 34 H 1.09001 * 109.47445 * 53.50270 * 17 15 14 35 35 H 1.08997 * 109.47410 * 59.99961 * 21 20 18 36 36 H 1.09002 * 109.47409 * 180.02562 * 21 20 18 37 37 H 1.09007 * 109.47161 * 300.00195 * 21 20 18 38 38 H 1.09002 * 109.47611 * 65.67122 * 22 20 18 39 39 H 1.08997 * 109.47401 * 185.67934 * 22 20 18 40 40 H 1.09004 * 109.46907 * 305.67923 * 22 20 18 41 41 H 1.08997 * 109.91488 * 333.51164 * 23 13 3 42 42 H 1.09002 * 109.91223 * 94.60842 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0070 5 6 1.5456 2.1501 -1.2353 6 1 0.8745 2.9914 -1.1434 7 6 1.9498 1.7235 -2.4825 8 7 2.8699 0.7903 -2.5920 9 14 1.1905 2.4713 -4.0167 10 1 1.7923 1.8461 -5.2218 11 1 -0.2746 2.2293 -4.0123 12 1 1.4507 3.9331 -4.0357 13 7 1.5427 2.1377 1.1947 14 6 2.0071 1.4642 2.4344 15 6 1.8629 2.5673 3.5127 16 1 0.8320 2.6396 3.8590 17 6 2.8090 2.3047 4.6860 18 6 2.2758 3.8491 2.7532 19 1 3.3219 4.0855 2.9478 20 7 1.4178 4.9743 3.1478 21 6 1.4607 5.1847 4.6009 22 6 1.7910 6.1989 2.4273 23 6 2.0710 3.5175 1.2634 24 1 -0.3634 -1.0232 0.0955 25 1 -0.3633 0.5943 0.8385 26 1 -0.3633 0.4290 -0.9339 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.3112 0.4488 -1.7986 30 1 1.3713 0.6106 2.6698 31 1 3.0478 1.1547 2.3375 32 1 2.7759 3.1485 5.3753 33 1 2.4998 1.3983 5.2062 34 1 3.8255 2.1805 4.3124 35 1 2.4841 5.4017 4.9066 36 1 0.8165 6.0231 4.8659 37 1 1.1128 4.2851 5.1088 38 1 1.5881 6.0711 1.3640 39 1 1.2092 7.0373 2.8101 40 1 2.8530 6.3969 2.5732 41 1 3.0226 3.5774 0.7353 42 1 1.3562 4.2111 0.8205 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227222454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:50 Heat of formation + Delta-G solvation = -14.669340 kcal Electronic energy + Delta-G solvation = -18809.994570 eV Core-core repulsion = 16209.970296 eV Total energy + Delta-G solvation = -2600.024274 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.78380 -38.04737 -35.80458 -33.59051 -32.67279 -29.67540 -28.43415 -28.11604 -26.19449 -25.59257 -23.82240 -22.16609 -21.04085 -20.78959 -18.60107 -17.66741 -16.61652 -16.03155 -15.65461 -15.55597 -15.47639 -15.18305 -14.54603 -14.27793 -13.95408 -13.84770 -13.50646 -13.46106 -13.12262 -13.00345 -12.85164 -12.64724 -12.44548 -12.39692 -12.04696 -11.95361 -11.90222 -11.81603 -11.57270 -11.48105 -11.33473 -10.48677 -10.46972 -9.30187 -9.06912 -8.54377 -6.24147 1.52481 1.59610 1.78877 2.57615 2.96599 3.20613 3.30475 3.60738 3.70572 4.16277 4.22626 4.32886 4.37143 4.43669 4.45245 4.51295 4.56375 4.63078 4.67218 4.70338 4.72248 4.79505 4.89523 4.91929 4.99365 5.02599 5.03935 5.09099 5.16927 5.23932 5.32393 5.37880 5.47077 5.68649 5.95632 6.08047 6.11555 6.17535 6.37738 6.52697 6.75301 7.52077 8.81346 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026150 B = 0.007624 C = 0.006445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.496922 B = 3671.823646 C = 4343.660863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.108 4.108 3 C 0.203 3.797 4 H -0.051 1.051 5 C -0.576 4.576 6 H 0.043 0.957 7 C -0.027 4.027 8 N -0.937 5.937 9 Si 1.105 2.895 10 H -0.285 1.285 11 H -0.272 1.272 12 H -0.275 1.275 13 N -0.503 5.503 14 C 0.037 3.963 15 C -0.077 4.077 16 H 0.092 0.908 17 C -0.139 4.139 18 C 0.086 3.914 19 H 0.041 0.959 20 N -0.548 5.548 21 C 0.024 3.976 22 C 0.024 3.976 23 C 0.068 3.932 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.033 0.967 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.256 0.744 30 H 0.081 0.919 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.028 0.972 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.025 0.975 41 H 0.007 0.993 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.937 6.344 14.639 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.146 4.146 3 C 0.095 3.905 4 H -0.033 1.033 5 C -0.615 4.615 6 H 0.061 0.939 7 C -0.225 4.225 8 N -0.575 5.575 9 Si 0.928 3.072 10 H -0.211 1.211 11 H -0.198 1.198 12 H -0.201 1.201 13 N -0.227 5.227 14 C -0.092 4.092 15 C -0.096 4.096 16 H 0.110 0.890 17 C -0.196 4.196 18 C -0.023 4.023 19 H 0.059 0.941 20 N -0.273 5.273 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.061 4.061 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.044 0.956 41 H 0.025 0.975 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.002 6.142 12.816 14.525 hybrid contribution 2.175 0.131 1.329 2.552 sum -0.827 6.272 14.146 15.496 Atomic orbital electron populations 1.21311 0.94735 0.99258 1.01294 1.21468 0.97705 0.96941 0.98518 1.19384 0.89658 0.92234 0.89214 1.03325 1.22004 1.30198 1.17000 0.92278 0.93914 1.26970 0.95604 0.95576 1.04308 1.70906 1.24995 1.28913 1.32731 0.83078 0.75956 0.75576 0.72554 1.21094 1.19775 1.20055 1.64682 1.55038 1.01412 1.01603 1.23297 0.97409 0.97874 0.90572 1.22084 1.01235 0.91786 0.94502 0.88978 1.21849 0.98038 1.02949 0.96809 1.22520 0.93784 0.92097 0.93876 0.94146 1.62024 1.53080 1.04731 1.07416 1.22518 1.00286 1.03066 0.86509 1.22414 0.98839 0.91995 0.99194 1.22534 0.96559 0.92045 0.94960 0.93532 0.92368 0.94772 0.94477 0.94117 0.93368 0.90082 0.95889 0.90813 0.90876 0.93496 0.95315 0.90184 0.90458 0.92757 0.89458 0.95601 0.97474 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.75 9.48 71.98 0.68 -4.07 16 2 C -0.11 -5.17 5.09 30.59 0.16 -5.02 16 3 C 0.20 10.48 1.08 44.17 0.05 10.53 16 4 H -0.05 -2.94 7.40 -2.39 -0.02 -2.95 16 5 C -0.58 -32.63 6.89 25.60 0.18 -32.45 16 6 H 0.04 2.48 7.56 -2.91 -0.02 2.46 16 7 C -0.03 -1.53 5.23 84.65 0.44 -1.08 16 8 N -0.94 -57.40 12.83 21.44 0.28 -57.12 16 9 Si 1.11 51.41 29.91 68.60 2.05 53.46 16 10 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 N -0.50 -22.11 4.23 -862.25 -3.64 -25.75 16 14 C 0.04 1.32 4.85 86.65 0.42 1.74 16 15 C -0.08 -2.19 2.43 -9.59 -0.02 -2.21 16 16 H 0.09 2.62 7.43 -2.39 -0.02 2.60 16 17 C -0.14 -2.97 8.90 71.98 0.64 -2.33 16 18 C 0.09 2.72 2.31 45.80 0.11 2.83 16 19 H 0.04 1.26 7.85 -2.39 -0.02 1.25 16 20 N -0.55 -15.09 4.79 -918.08 -4.40 -19.49 16 21 C 0.02 0.48 8.35 127.69 1.07 1.54 16 22 C 0.02 0.60 9.27 127.69 1.18 1.78 16 23 C 0.07 2.81 5.10 86.44 0.44 3.25 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 2.45 7.43 -2.38 -0.02 2.43 16 26 H 0.03 1.63 7.42 -2.39 -0.02 1.61 16 27 H 0.04 1.98 6.19 -2.39 -0.01 1.96 16 28 H 0.04 1.75 6.95 -2.38 -0.02 1.73 16 29 H 0.26 15.93 6.09 -92.71 -0.56 15.37 16 30 H 0.08 2.76 7.67 -2.39 -0.02 2.74 16 31 H 0.02 0.86 7.88 -2.39 -0.02 0.84 16 32 H 0.07 1.31 6.36 -2.38 -0.02 1.30 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 35 H 0.03 0.53 8.08 -2.39 -0.02 0.51 16 36 H 0.08 1.36 8.06 -2.39 -0.02 1.34 16 37 H 0.08 1.46 5.83 -2.38 -0.01 1.45 16 38 H 0.05 1.58 6.71 -2.39 -0.02 1.56 16 39 H 0.09 1.77 8.02 -2.39 -0.02 1.75 16 40 H 0.03 0.62 8.12 -2.39 -0.02 0.60 16 41 H 0.01 0.32 7.69 -2.39 -0.02 0.30 16 42 H 0.06 2.85 6.51 -2.39 -0.02 2.83 16 Total: -1.00 -64.51 311.70 0.79 -63.73 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.16 Total: 10.68 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 5.34 Total: -25.50 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -7.77 Total: -102.36 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -64.51 0.79 -63.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227222454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.057 kcal (2) G-P(sol) polarization free energy of solvation -64.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds