Wall clock time and date at job start Mon Mar 30 2020 03:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 H 1.09002 * 109.46996 * 178.70964 * 3 2 1 5 5 C 1.50692 * 109.47236 * 58.70590 * 3 2 1 6 6 H 1.08003 * 120.00253 * 239.99360 * 5 3 2 7 7 C 1.37882 * 120.00072 * 60.00590 * 5 3 2 8 8 N 1.31513 * 119.99883 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99947 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47287 * 359.97438 * 9 7 5 11 11 H 1.48509 * 109.47127 * 119.99750 * 9 7 5 12 12 H 1.48501 * 109.47319 * 239.99481 * 9 7 5 13 13 N 1.46901 * 109.47139 * 298.70386 * 3 2 1 14 14 C 1.47905 * 111.00299 * 300.06170 * 13 3 2 15 15 C 1.53992 * 107.05948 * 214.15518 * 14 13 3 16 16 H 1.08994 * 110.30654 * 120.13769 * 15 14 13 17 17 C 1.53001 * 110.30545 * 242.30938 * 15 14 13 18 18 C 1.54601 * 105.13807 * 1.22119 * 15 14 13 19 19 H 1.09006 * 110.87497 * 263.53021 * 18 15 14 20 20 N 1.46893 * 110.72059 * 140.31840 * 18 15 14 21 21 C 1.46905 * 111.00151 * 60.74570 * 20 18 15 22 22 C 1.46902 * 111.00164 * 184.69883 * 20 18 15 23 23 C 1.48531 * 111.00218 * 182.66032 * 13 3 2 24 24 H 1.08993 * 109.47312 * 301.62423 * 1 2 3 25 25 H 1.09006 * 109.46837 * 61.62297 * 1 2 3 26 26 H 1.08997 * 109.47047 * 181.61701 * 1 2 3 27 27 H 1.09001 * 109.47577 * 239.99687 * 2 1 3 28 28 H 1.09002 * 109.47159 * 119.99308 * 2 1 3 29 29 H 0.96997 * 119.99920 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.91050 * 333.50435 * 14 13 3 31 31 H 1.08999 * 109.91496 * 94.59959 * 14 13 3 32 32 H 1.09006 * 109.46876 * 175.71803 * 17 15 14 33 33 H 1.08999 * 109.46932 * 295.70925 * 17 15 14 34 34 H 1.09000 * 109.47634 * 55.71430 * 17 15 14 35 35 H 1.09007 * 109.47022 * 180.02562 * 21 20 18 36 36 H 1.08994 * 109.46860 * 60.00096 * 21 20 18 37 37 H 1.08995 * 109.47023 * 299.99797 * 21 20 18 38 38 H 1.09003 * 109.46901 * 299.38945 * 22 20 18 39 39 H 1.09000 * 109.46694 * 59.38233 * 22 20 18 40 40 H 1.09000 * 109.47384 * 179.38446 * 22 20 18 41 41 H 1.09007 * 110.66563 * 41.29192 * 23 13 3 42 42 H 1.08999 * 110.66919 * 278.16033 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 0.0231 5 6 1.5116 2.1621 1.2140 6 1 0.8931 3.0395 1.0952 7 6 1.8181 1.7006 2.4767 8 7 2.5710 0.6321 2.6215 9 14 1.1637 2.5930 3.9816 10 1 0.3484 3.7572 3.5511 11 1 0.3214 1.6661 4.7795 12 1 2.3016 3.0656 4.8106 13 7 1.5760 2.1259 -1.2148 14 6 2.0751 1.4452 -2.4294 15 6 2.3328 2.5363 -3.4851 16 1 3.3806 2.5324 -3.7850 17 6 1.4301 2.3216 -4.7017 18 6 1.9802 3.8681 -2.7836 19 1 0.9624 4.1759 -3.0235 20 7 2.9391 4.9186 -3.1507 21 6 2.9212 5.1651 -4.5988 22 6 2.6768 6.1555 -2.4029 23 6 2.1055 3.5121 -1.2809 24 1 -0.3633 0.5388 0.8750 25 1 -0.3633 0.4885 -0.9042 26 1 -0.3633 -1.0272 0.0290 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.7862 0.3072 3.5097 30 1 3.0029 0.9189 -2.2052 31 1 1.3275 0.7407 -2.7939 32 1 1.5684 3.1421 -5.4059 33 1 1.6901 1.3801 -5.1853 34 1 0.3889 2.2899 -4.3806 35 1 3.6405 5.9468 -4.8432 36 1 1.9231 5.4819 -4.9011 37 1 3.1872 4.2493 -5.1266 38 1 1.6737 6.5141 -2.6341 39 1 2.7543 5.9571 -1.3339 40 1 3.4077 6.9131 -2.6858 41 1 3.1482 3.5411 -0.9644 42 1 1.4993 4.1848 -0.6743 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227222459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:53 Heat of formation + Delta-G solvation = 5.149110 kcal Electronic energy + Delta-G solvation = -18756.078193 eV Core-core repulsion = 16156.913311 eV Total energy + Delta-G solvation = -2599.164881 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.20373 -36.32943 -34.01782 -31.81179 -30.81965 -28.15595 -27.18688 -26.69942 -24.83013 -23.65601 -22.27753 -20.52984 -19.68765 -18.53214 -16.52600 -15.65475 -15.13948 -14.55136 -14.47803 -14.16252 -13.54169 -13.26444 -13.09932 -12.90072 -12.56632 -12.20987 -12.15235 -12.07536 -11.62258 -11.40694 -11.25021 -11.18043 -10.91763 -10.59058 -10.46259 -10.42842 -10.34558 -9.96971 -9.84784 -9.57337 -9.32954 -8.76503 -8.37826 -8.16370 -7.18525 -5.96723 -3.99513 3.31374 3.39566 3.43581 4.09409 4.44653 4.96105 5.14050 5.20436 5.31539 5.34043 5.39784 5.45399 5.60348 5.67236 5.77729 5.81194 5.86695 5.95861 6.06042 6.12545 6.24747 6.35400 6.48898 6.51406 6.59692 6.64612 6.69496 6.69994 6.83824 7.16120 7.20881 7.23911 7.38911 7.46801 7.67635 7.77150 7.88270 8.16418 8.38481 8.61706 9.05901 9.64138 11.10140 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026093 B = 0.007623 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.835652 B = 3672.028643 C = 4432.254082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C 0.209 3.791 4 H -0.001 1.001 5 C -0.493 4.493 6 H 0.060 0.940 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.508 5.508 14 C 0.044 3.956 15 C -0.096 4.096 16 H 0.076 0.924 17 C -0.142 4.142 18 C 0.078 3.922 19 H 0.050 0.950 20 N -0.540 5.540 21 C 0.024 3.976 22 C 0.024 3.976 23 C 0.064 3.936 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.014 0.986 27 H 0.012 0.988 28 H 0.090 0.910 29 H 0.259 0.741 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.021 0.979 37 H 0.069 0.931 38 H 0.022 0.978 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 5.616 -11.944 13.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.148 4.148 3 C 0.103 3.897 4 H 0.017 0.983 5 C -0.532 4.532 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.233 5.233 14 C -0.085 4.085 15 C -0.115 4.115 16 H 0.095 0.905 17 C -0.200 4.200 18 C -0.030 4.030 19 H 0.068 0.932 20 N -0.264 5.264 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.064 4.064 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.033 0.967 27 H 0.031 0.969 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.088 0.912 38 H 0.040 0.960 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.539 5.323 -11.631 12.803 hybrid contribution -0.188 0.669 0.681 0.973 sum -0.727 5.992 -10.950 12.503 Atomic orbital electron populations 1.21460 0.97314 0.97354 1.01597 1.21524 0.95239 0.98106 0.99904 1.19455 0.93040 0.91139 0.86066 0.98323 1.21063 1.30747 1.11731 0.89623 0.92160 1.24897 0.95300 0.95117 0.98833 1.69891 1.37645 1.23191 1.22521 0.86543 0.78647 0.79774 0.83074 1.19807 1.21089 1.21222 1.64837 1.55128 1.00966 1.02320 1.22813 0.98327 0.95867 0.91456 1.22024 0.99695 0.94495 0.95321 0.90528 1.21917 1.00028 1.00843 0.97166 1.22770 0.92779 0.90503 0.96965 0.93215 1.62048 1.50967 1.08015 1.05353 1.22426 0.99482 1.01648 0.88867 1.22378 0.98867 0.91315 0.99824 1.22915 0.98848 0.92411 0.92255 0.92292 0.94046 0.96686 0.96909 0.89198 0.93127 0.94639 0.91438 0.93222 0.92858 0.92384 0.91981 0.96066 0.91181 0.95951 0.90707 0.91905 0.93508 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.51 37.16 0.35 -2.34 16 2 C -0.11 -2.65 5.26 -26.73 -0.14 -2.79 16 3 C 0.21 5.25 1.43 -68.87 -0.10 5.15 16 4 H 0.00 -0.02 8.00 -51.93 -0.42 -0.44 16 5 C -0.49 -13.31 6.78 -34.44 -0.23 -13.54 16 6 H 0.06 1.65 7.12 -52.48 -0.37 1.27 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -25.40 11.33 55.43 0.63 -24.77 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.51 -10.91 4.42 -223.88 -0.99 -11.90 16 14 C 0.04 0.82 5.04 -2.75 -0.01 0.81 16 15 C -0.10 -1.49 2.45 -89.26 -0.22 -1.70 16 16 H 0.08 1.19 7.65 -51.93 -0.40 0.79 16 17 C -0.14 -1.82 8.67 37.16 0.32 -1.49 16 18 C 0.08 1.27 2.31 -65.85 -0.15 1.12 16 19 H 0.05 0.83 7.87 -51.93 -0.41 0.42 16 20 N -0.54 -7.85 4.85 -240.92 -1.17 -9.02 16 21 C 0.02 0.28 8.55 60.07 0.51 0.80 16 22 C 0.02 0.32 9.37 60.07 0.56 0.88 16 23 C 0.06 1.28 4.24 -1.90 -0.01 1.27 16 24 H 0.06 1.43 7.12 -51.93 -0.37 1.06 16 25 H 0.04 0.89 7.69 -51.93 -0.40 0.49 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.01 0.28 7.01 -51.93 -0.36 -0.09 16 28 H 0.09 2.42 6.10 -51.93 -0.32 2.11 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 30 H 0.04 0.70 7.53 -51.93 -0.39 0.31 16 31 H 0.07 1.22 7.69 -51.93 -0.40 0.82 16 32 H 0.05 0.56 6.32 -51.93 -0.33 0.23 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 36 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.80 5.89 -51.93 -0.31 0.49 16 38 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 1.06 7.08 -51.93 -0.37 0.70 16 40 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 41 H 0.05 1.01 7.96 -51.92 -0.41 0.60 16 42 H 0.07 1.49 7.38 -51.93 -0.38 1.11 16 LS Contribution 314.07 15.07 4.73 4.73 Total: -1.00 -27.91 314.07 -8.75 -36.67 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.73 Total: -1.73 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 0.79 Total: -10.30 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -1.53 Total: -45.70 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.91 -8.75 -36.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227222459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.815 kcal (2) G-P(sol) polarization free energy of solvation -27.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds