Wall clock time and date at job start Mon Mar 30 2020 03:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 H 1.09002 * 109.46996 * 178.70964 * 3 2 1 5 5 C 1.50692 * 109.47236 * 58.70590 * 3 2 1 6 6 H 1.08003 * 120.00253 * 239.99360 * 5 3 2 7 7 C 1.37882 * 120.00072 * 60.00590 * 5 3 2 8 8 N 1.31513 * 119.99883 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99947 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47287 * 359.97438 * 9 7 5 11 11 H 1.48509 * 109.47127 * 119.99750 * 9 7 5 12 12 H 1.48501 * 109.47319 * 239.99481 * 9 7 5 13 13 N 1.46901 * 109.47139 * 298.70386 * 3 2 1 14 14 C 1.47905 * 111.00299 * 300.06170 * 13 3 2 15 15 C 1.53992 * 107.05948 * 214.15518 * 14 13 3 16 16 H 1.08994 * 110.30654 * 120.13769 * 15 14 13 17 17 C 1.53001 * 110.30545 * 242.30938 * 15 14 13 18 18 C 1.54601 * 105.13807 * 1.22119 * 15 14 13 19 19 H 1.09006 * 110.87497 * 263.53021 * 18 15 14 20 20 N 1.46893 * 110.72059 * 140.31840 * 18 15 14 21 21 C 1.46905 * 111.00151 * 60.74570 * 20 18 15 22 22 C 1.46902 * 111.00164 * 184.69883 * 20 18 15 23 23 C 1.48531 * 111.00218 * 182.66032 * 13 3 2 24 24 H 1.08993 * 109.47312 * 301.62423 * 1 2 3 25 25 H 1.09006 * 109.46837 * 61.62297 * 1 2 3 26 26 H 1.08997 * 109.47047 * 181.61701 * 1 2 3 27 27 H 1.09001 * 109.47577 * 239.99687 * 2 1 3 28 28 H 1.09002 * 109.47159 * 119.99308 * 2 1 3 29 29 H 0.96997 * 119.99920 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.91050 * 333.50435 * 14 13 3 31 31 H 1.08999 * 109.91496 * 94.59959 * 14 13 3 32 32 H 1.09006 * 109.46876 * 175.71803 * 17 15 14 33 33 H 1.08999 * 109.46932 * 295.70925 * 17 15 14 34 34 H 1.09000 * 109.47634 * 55.71430 * 17 15 14 35 35 H 1.09007 * 109.47022 * 180.02562 * 21 20 18 36 36 H 1.08994 * 109.46860 * 60.00096 * 21 20 18 37 37 H 1.08995 * 109.47023 * 299.99797 * 21 20 18 38 38 H 1.09003 * 109.46901 * 299.38945 * 22 20 18 39 39 H 1.09000 * 109.46694 * 59.38233 * 22 20 18 40 40 H 1.09000 * 109.47384 * 179.38446 * 22 20 18 41 41 H 1.09007 * 110.66563 * 41.29192 * 23 13 3 42 42 H 1.08999 * 110.66919 * 278.16033 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 0.0231 5 6 1.5116 2.1621 1.2140 6 1 0.8931 3.0395 1.0952 7 6 1.8181 1.7006 2.4767 8 7 2.5710 0.6321 2.6215 9 14 1.1637 2.5930 3.9816 10 1 0.3484 3.7572 3.5511 11 1 0.3214 1.6661 4.7795 12 1 2.3016 3.0656 4.8106 13 7 1.5760 2.1259 -1.2148 14 6 2.0751 1.4452 -2.4294 15 6 2.3328 2.5363 -3.4851 16 1 3.3806 2.5324 -3.7850 17 6 1.4301 2.3216 -4.7017 18 6 1.9802 3.8681 -2.7836 19 1 0.9624 4.1759 -3.0235 20 7 2.9391 4.9186 -3.1507 21 6 2.9212 5.1651 -4.5988 22 6 2.6768 6.1555 -2.4029 23 6 2.1055 3.5121 -1.2809 24 1 -0.3633 0.5388 0.8750 25 1 -0.3633 0.4885 -0.9042 26 1 -0.3633 -1.0272 0.0290 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.7862 0.3072 3.5097 30 1 3.0029 0.9189 -2.2052 31 1 1.3275 0.7407 -2.7939 32 1 1.5684 3.1421 -5.4059 33 1 1.6901 1.3801 -5.1853 34 1 0.3889 2.2899 -4.3806 35 1 3.6405 5.9468 -4.8432 36 1 1.9231 5.4819 -4.9011 37 1 3.1872 4.2493 -5.1266 38 1 1.6737 6.5141 -2.6341 39 1 2.7543 5.9571 -1.3339 40 1 3.4077 6.9131 -2.6858 41 1 3.1482 3.5411 -0.9644 42 1 1.4993 4.1848 -0.6743 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227222459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:52 Heat of formation + Delta-G solvation = -13.042112 kcal Electronic energy + Delta-G solvation = -18756.867023 eV Core-core repulsion = 16156.913311 eV Total energy + Delta-G solvation = -2599.953712 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.64847 -37.84126 -35.64085 -33.58688 -32.52353 -29.59698 -28.63219 -28.13719 -26.31394 -25.43532 -23.70951 -22.04837 -21.22982 -20.17432 -18.33728 -17.37330 -16.70067 -16.21998 -15.85785 -15.46719 -15.20239 -14.65601 -14.58626 -14.22811 -14.09912 -13.95190 -13.60778 -13.16326 -13.03094 -12.89471 -12.85008 -12.72423 -12.43275 -12.38028 -12.25098 -11.93641 -11.77208 -11.62086 -11.43762 -11.30371 -11.19158 -10.78552 -10.48326 -9.27398 -9.00325 -8.08562 -6.18161 1.39313 1.41585 1.52592 2.42666 2.91545 3.20394 3.62000 3.70834 3.79683 4.08263 4.29869 4.42852 4.48084 4.53037 4.60272 4.63951 4.71005 4.73439 4.75953 4.77616 4.87432 4.94752 5.00715 5.03085 5.06776 5.09576 5.17761 5.25047 5.26914 5.40381 5.46261 5.49207 5.72343 5.75228 5.85756 6.10510 6.17383 6.29681 6.38817 6.69006 6.93907 7.49358 8.97684 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026093 B = 0.007623 C = 0.006316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.835652 B = 3672.028643 C = 4432.254082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C 0.218 3.782 4 H -0.045 1.045 5 C -0.502 4.502 6 H 0.052 0.948 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.512 5.512 14 C 0.042 3.958 15 C -0.087 4.087 16 H 0.078 0.922 17 C -0.134 4.134 18 C 0.093 3.907 19 H 0.053 0.947 20 N -0.555 5.555 21 C 0.025 3.975 22 C 0.025 3.975 23 C 0.067 3.933 24 H 0.035 0.965 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.260 0.740 30 H 0.018 0.982 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.020 0.980 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 6.464 -13.727 15.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 C 0.110 3.890 4 H -0.028 1.028 5 C -0.540 4.540 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.209 1.209 13 N -0.237 5.237 14 C -0.086 4.086 15 C -0.106 4.106 16 H 0.097 0.903 17 C -0.191 4.191 18 C -0.016 4.016 19 H 0.070 0.930 20 N -0.280 5.280 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.062 4.062 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.038 0.962 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.427 6.182 -13.436 14.858 hybrid contribution 0.141 0.422 1.211 1.290 sum -1.286 6.605 -12.225 13.954 Atomic orbital electron populations 1.21312 0.95614 0.98576 1.00935 1.21397 0.96606 0.97218 0.99111 1.19213 0.90258 0.92106 0.87391 1.02809 1.21237 1.30508 1.11556 0.90728 0.92986 1.25617 0.95532 0.95802 1.01493 1.70022 1.38585 1.24352 1.23086 0.85599 0.78112 0.78814 0.79705 1.19267 1.20542 1.20907 1.64748 1.55091 1.01736 1.02101 1.22904 0.97651 0.96940 0.91150 1.21969 1.00643 0.92593 0.95418 0.90327 1.21854 0.98815 1.02496 0.95984 1.22542 0.93451 0.91719 0.93867 0.92961 1.62016 1.50390 1.08170 1.07425 1.22496 1.00588 1.02592 0.86631 1.22385 1.00047 0.91301 0.98573 1.22829 0.96669 0.91447 0.95262 0.94593 0.92989 0.94395 0.95473 0.92143 0.93093 0.96393 0.90391 0.91176 0.91433 0.92815 0.90298 0.95124 0.90649 0.95158 0.92773 0.89790 0.96207 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.75 9.51 71.98 0.68 -4.07 16 2 C -0.10 -5.16 5.26 30.59 0.16 -5.00 16 3 C 0.22 11.32 1.43 44.17 0.06 11.38 16 4 H -0.05 -2.71 8.00 -2.39 -0.02 -2.73 16 5 C -0.50 -27.89 6.78 25.60 0.17 -27.71 16 6 H 0.05 2.92 7.12 -2.91 -0.02 2.90 16 7 C 0.01 0.78 5.30 84.66 0.45 1.23 16 8 N -0.92 -53.80 11.33 21.45 0.24 -53.55 16 9 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 N -0.51 -22.38 4.42 -862.23 -3.81 -26.19 16 14 C 0.04 1.55 5.04 86.44 0.44 1.98 16 15 C -0.09 -2.54 2.45 -9.91 -0.02 -2.57 16 16 H 0.08 2.30 7.65 -2.39 -0.02 2.28 16 17 C -0.13 -2.98 8.67 71.98 0.62 -2.36 16 18 C 0.09 2.92 2.31 46.12 0.11 3.02 16 19 H 0.05 1.63 7.87 -2.38 -0.02 1.61 16 20 N -0.56 -15.21 4.85 -916.13 -4.45 -19.66 16 21 C 0.02 0.50 8.55 127.69 1.09 1.59 16 22 C 0.03 0.62 9.37 127.69 1.20 1.82 16 23 C 0.07 2.71 4.24 86.65 0.37 3.08 16 24 H 0.03 1.73 7.12 -2.39 -0.02 1.72 16 25 H 0.05 2.16 7.69 -2.38 -0.02 2.14 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.03 1.22 7.01 -2.39 -0.02 1.20 16 28 H 0.06 3.35 6.10 -2.39 -0.01 3.33 16 29 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.02 0.71 7.53 -2.39 -0.02 0.69 16 31 H 0.08 2.69 7.69 -2.39 -0.02 2.67 16 32 H 0.07 1.30 6.32 -2.38 -0.02 1.28 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.35 8.13 -2.38 -0.02 1.33 16 36 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 1.45 5.89 -2.39 -0.01 1.43 16 38 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.05 1.55 7.08 -2.39 -0.02 1.54 16 40 H 0.08 1.72 8.13 -2.39 -0.02 1.70 16 41 H 0.02 0.90 7.96 -2.38 -0.02 0.88 16 42 H 0.06 2.50 7.38 -2.39 -0.02 2.48 16 Total: -1.00 -61.32 314.07 0.29 -61.03 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 0.95 Total: 9.53 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 5.33 Total: -17.60 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -8.01 Total: -99.40 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -61.32 0.29 -61.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227222459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.988 kcal (2) G-P(sol) polarization free energy of solvation -61.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds