Wall clock time and date at job start Mon Mar 30 2020 04:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47167 * 2 1 4 4 N 1.46901 * 109.47332 * 120.00220 * 2 1 3 5 5 C 1.46890 * 111.00218 * 166.96651 * 4 2 1 6 6 C 1.50700 * 109.47258 * 293.95201 * 5 4 2 7 7 H 1.08004 * 120.00162 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00390 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99551 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00202 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47061 * 60.00123 * 10 8 6 12 12 H 1.48498 * 109.47164 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47199 * 300.00431 * 10 8 6 14 14 C 1.46896 * 110.99874 * 290.92358 * 4 2 1 15 15 C 1.53005 * 109.47371 * 164.03839 * 14 4 2 16 16 N 1.46897 * 109.47398 * 176.87683 * 15 14 4 17 17 C 1.48537 * 111.00209 * 52.60110 * 16 15 14 18 18 C 1.54932 * 103.22550 * 159.72320 * 17 16 15 19 19 C 1.54595 * 102.92357 * 322.58556 * 18 17 16 20 20 C 1.47897 * 111.00065 * 170.00002 * 16 15 14 21 21 H 1.09004 * 109.47249 * 306.33751 * 1 2 3 22 22 H 1.08997 * 109.47047 * 66.33770 * 1 2 3 23 23 H 1.08996 * 109.47594 * 186.33790 * 1 2 3 24 24 H 1.09000 * 109.47161 * 240.00012 * 2 1 3 25 25 H 1.09001 * 109.46973 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47408 * 300.00312 * 3 2 1 27 27 H 1.09004 * 109.47145 * 60.00436 * 3 2 1 28 28 H 1.08995 * 109.47431 * 53.95194 * 5 4 2 29 29 H 1.09003 * 109.47252 * 173.95883 * 5 4 2 30 30 H 0.97006 * 120.00108 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.47475 * 44.03814 * 14 4 2 32 32 H 1.09000 * 109.47215 * 284.03537 * 14 4 2 33 33 H 1.08995 * 109.46952 * 56.87149 * 15 14 4 34 34 H 1.08995 * 109.46920 * 296.87728 * 15 14 4 35 35 H 1.08995 * 110.66560 * 278.15991 * 17 16 15 36 36 H 1.09003 * 110.66180 * 41.28609 * 17 16 15 37 37 H 1.09007 * 110.72209 * 204.23259 * 18 17 16 38 38 H 1.09000 * 110.72848 * 80.94740 * 18 17 16 39 39 H 1.08999 * 110.31342 * 263.04353 * 19 18 17 40 40 H 1.09005 * 110.30982 * 140.87541 * 19 18 17 41 41 H 1.08994 * 109.91997 * 333.50920 * 20 16 15 42 42 H 1.09003 * 109.91547 * 94.60292 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4548 -0.9858 1.0889 6 6 3.6799 -1.9834 -0.0180 7 1 2.8407 -2.3614 -0.5832 8 6 4.9571 -2.4128 -0.3100 9 7 5.9790 -1.9522 0.3779 10 14 5.2362 -3.6488 -1.6825 11 1 4.7459 -3.0833 -2.9651 12 1 6.6871 -3.9445 -1.7950 13 1 4.4973 -4.9007 -1.3791 14 6 1.7335 0.0870 2.4111 15 6 1.8837 -0.8096 3.6418 16 7 1.6708 -0.0126 4.8573 17 6 0.3863 0.7301 4.7886 18 6 0.0841 1.0535 6.2734 19 6 0.5653 -0.2181 7.0091 20 6 1.5710 -0.8814 6.0500 21 1 -0.3634 0.6090 0.8278 22 1 -0.3633 0.4124 -0.9412 23 1 -0.3634 -1.0213 0.1134 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 3.9973 -0.0672 0.8659 29 1 3.8144 -1.4008 2.0305 30 1 6.8776 -2.2545 0.1728 31 1 0.7145 0.4712 2.3638 32 1 2.4330 0.9200 2.4810 33 1 2.8858 -1.2380 3.6590 34 1 1.1466 -1.6114 3.5993 35 1 0.5025 1.6471 4.2111 36 1 -0.3981 0.1035 4.3640 37 1 -0.9845 1.2059 6.4252 38 1 0.6495 1.9259 6.6010 39 1 -0.2747 -0.8866 7.1981 40 1 1.0552 0.0491 7.9455 41 1 1.2124 -1.8693 5.7609 42 1 2.5459 -0.9664 6.5301 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230073729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:26 Heat of formation + Delta-G solvation = 0.207091 kcal Electronic energy + Delta-G solvation = -18173.364362 eV Core-core repulsion = 15573.985179 eV Total energy + Delta-G solvation = -2599.379183 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.95552 -37.47300 -32.79087 -32.75320 -30.51553 -28.93084 -27.76629 -26.58306 -25.44548 -22.81621 -21.93033 -20.76414 -20.39720 -18.43180 -16.26811 -15.93767 -15.86408 -15.03630 -14.37055 -14.23860 -14.02667 -13.65904 -13.20149 -12.91946 -12.53200 -12.50008 -12.06107 -11.91630 -11.62483 -11.35112 -11.29442 -11.05568 -10.97669 -10.91884 -10.71734 -10.65706 -10.57807 -10.42717 -10.23197 -9.94795 -9.54318 -9.10216 -8.39096 -8.15819 -7.13505 -5.98143 -3.98976 3.35460 3.39616 3.42456 4.14917 4.46862 4.69936 4.75571 4.94802 5.15179 5.35727 5.37294 5.53059 5.54012 5.63091 5.69032 5.76088 5.78080 5.82543 5.87230 6.02621 6.03954 6.08192 6.09374 6.10800 6.21726 6.29075 6.31800 6.51657 6.54846 6.61314 6.82142 6.92648 7.12224 7.28895 7.42319 7.49773 7.85980 8.17880 8.29861 8.62621 9.08586 9.64635 11.12545 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025422 B = 0.006020 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.129206 B = 4650.037079 C = 5360.898545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.082 3.918 3 C -0.179 4.179 4 N -0.532 5.532 5 C 0.190 3.810 6 C -0.506 4.506 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.058 3.942 15 C 0.052 3.948 16 N -0.518 5.518 17 C 0.034 3.966 18 C -0.124 4.124 19 C -0.130 4.130 20 C 0.035 3.965 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.046 0.954 28 H -0.005 1.005 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.044 0.956 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.376 5.399 8.271 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C -0.238 4.238 4 N -0.256 5.256 5 C 0.065 3.935 6 C -0.545 4.545 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.071 4.071 15 C -0.075 4.075 16 N -0.243 5.243 17 C -0.094 4.094 18 C -0.162 4.162 19 C -0.168 4.168 20 C -0.093 4.093 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.012 0.988 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.965 5.267 8.353 14.756 hybrid contribution 0.129 -0.514 -0.884 1.031 sum -10.836 4.753 7.468 13.992 Atomic orbital electron populations 1.21852 0.96307 1.01548 0.99997 1.21568 0.93601 0.91984 0.95585 1.22429 1.02324 0.98589 1.00490 1.62257 1.20934 1.42657 0.99762 1.19771 0.80773 0.95354 0.97560 1.21139 0.92365 1.24343 1.16641 0.92056 1.24972 0.96086 0.96761 0.96727 1.69954 0.98973 1.44180 1.40679 0.86606 0.76865 0.81792 0.82405 1.20340 1.21415 1.20242 1.21994 0.99568 0.94892 0.90612 1.22314 1.02330 0.94664 0.88238 1.64794 1.31761 1.24876 1.02888 1.23219 0.90998 0.98799 0.96425 1.22486 1.00483 0.98103 0.95151 1.22390 0.98574 0.97081 0.98774 1.22849 0.99567 0.95195 0.91669 0.93829 0.93370 0.92313 0.88960 0.92065 0.93402 0.93494 0.98770 0.95078 0.92947 0.92282 0.94866 0.89834 0.94386 0.90255 0.93833 0.91457 0.90928 0.91808 0.91268 0.93782 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.08 37.16 0.34 -1.87 16 2 C 0.08 1.58 2.77 -67.72 -0.19 1.39 16 3 C -0.18 -3.20 8.45 37.16 0.31 -2.89 16 4 N -0.53 -11.41 4.38 -228.09 -1.00 -12.41 16 5 C 0.19 4.95 4.47 -4.98 -0.02 4.93 16 6 C -0.51 -14.19 8.33 -34.44 -0.29 -14.48 16 7 H 0.06 1.70 7.22 -52.48 -0.38 1.32 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 10 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.06 1.08 3.15 -3.82 -0.01 1.07 16 15 C 0.05 0.94 5.14 -3.82 -0.02 0.92 16 16 N -0.52 -8.00 5.40 -230.46 -1.24 -9.25 16 17 C 0.03 0.43 5.12 -1.90 -0.01 0.42 16 18 C -0.12 -1.31 7.06 -24.87 -0.18 -1.48 16 19 C -0.13 -1.37 6.93 -25.37 -0.18 -1.54 16 20 C 0.04 0.47 6.69 -2.76 -0.02 0.45 16 21 H 0.04 0.64 6.65 -51.93 -0.35 0.29 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.09 2.00 6.61 -51.93 -0.34 1.66 16 25 H 0.06 1.24 6.71 -51.93 -0.35 0.89 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.78 6.66 -51.93 -0.35 0.43 16 28 H -0.01 -0.15 6.56 -51.93 -0.34 -0.49 16 29 H 0.03 0.87 6.36 -51.93 -0.33 0.54 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.06 0.99 5.04 -51.93 -0.26 0.73 16 32 H 0.03 0.66 7.15 -51.93 -0.37 0.29 16 33 H 0.08 1.71 6.50 -51.93 -0.34 1.37 16 34 H 0.04 0.68 7.81 -51.93 -0.41 0.28 16 35 H 0.08 1.02 7.73 -51.93 -0.40 0.62 16 36 H 0.04 0.57 8.00 -51.93 -0.42 0.15 16 37 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.04 0.59 7.57 -51.93 -0.39 0.20 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 316.56 15.07 4.77 4.77 Total: -1.00 -29.28 316.56 -9.64 -38.93 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.53 Total: -1.07 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.35 Total: -11.60 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -1.51 Total: -47.77 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.28 -9.64 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230073729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.136 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds