Wall clock time and date at job start Mon Mar 30 2020 04:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47118 * 2 1 4 4 N 1.46903 * 109.47308 * 119.99766 * 2 1 3 5 5 C 1.46891 * 111.00409 * 175.65307 * 4 2 1 6 6 C 1.50705 * 109.46880 * 293.95455 * 5 4 2 7 7 H 1.07992 * 120.00021 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00030 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99729 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00001 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47227 * 59.99676 * 10 8 6 12 12 H 1.48501 * 109.47081 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47095 * 299.99422 * 10 8 6 14 14 C 1.46907 * 110.99685 * 299.60678 * 4 2 1 15 15 C 1.53003 * 109.47210 * 87.50469 * 14 4 2 16 16 H 1.09005 * 109.45223 * 296.63618 * 15 14 4 17 17 C 1.53030 * 109.46077 * 176.66918 * 15 14 4 18 18 C 1.53122 * 109.27956 * 180.80445 * 17 15 14 19 19 C 1.53124 * 109.15896 * 57.64901 * 18 17 15 20 20 C 1.53036 * 109.27767 * 302.34810 * 19 18 17 21 21 N 1.46842 * 109.52475 * 59.18252 * 20 19 18 22 22 H 1.09000 * 109.47323 * 311.60043 * 1 2 3 23 23 H 1.09002 * 109.46677 * 71.59587 * 1 2 3 24 24 H 1.08993 * 109.47430 * 191.59610 * 1 2 3 25 25 H 1.09000 * 109.47713 * 239.99780 * 2 1 3 26 26 H 1.09007 * 109.47252 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46901 * 299.99707 * 3 2 1 28 28 H 1.08991 * 109.47269 * 59.99856 * 3 2 1 29 29 H 1.08997 * 109.47708 * 53.95022 * 5 4 2 30 30 H 1.08997 * 109.47460 * 173.95429 * 5 4 2 31 31 H 0.96999 * 119.99465 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.46972 * 327.50446 * 14 4 2 33 33 H 1.08998 * 109.47019 * 207.50512 * 14 4 2 34 34 H 1.08996 * 109.50828 * 60.85705 * 17 15 14 35 35 H 1.09005 * 109.53408 * 300.75736 * 17 15 14 36 36 H 1.08996 * 109.52022 * 297.74749 * 18 17 15 37 37 H 1.08992 * 109.52543 * 177.55542 * 18 17 15 38 38 H 1.08999 * 109.50287 * 62.28697 * 19 18 17 39 39 H 1.08999 * 109.50025 * 182.41261 * 19 18 17 40 40 H 1.09004 * 109.46323 * 179.19639 * 20 19 18 41 41 H 1.08998 * 109.46742 * 299.16165 * 20 19 18 42 42 H 1.00896 * 111.00436 * 174.15807 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4844 -0.8027 1.1826 6 6 3.9073 -1.7035 0.0509 7 1 3.1624 -2.1497 -0.5913 8 6 5.2451 -1.9588 -0.1641 9 7 6.1521 -1.4158 0.6183 10 14 5.7693 -3.0748 -1.5673 11 1 5.3016 -2.5031 -2.8556 12 1 7.2500 -3.1864 -1.5843 13 1 5.1731 -4.4216 -1.3779 14 6 1.5563 -0.0208 2.4211 15 6 0.1841 -0.5703 2.8161 16 1 -0.5395 -0.3353 2.0355 17 6 -0.2612 0.0689 4.1332 18 6 -1.6254 -0.4987 4.5349 19 6 -1.5209 -2.0218 4.6534 20 6 -1.0390 -2.6003 3.3211 21 7 0.2695 -2.0269 2.9816 22 1 -0.3634 0.6823 0.7685 23 1 -0.3633 0.3245 -0.9751 24 1 -0.3634 -1.0066 0.2066 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.9217 0.1858 1.0429 30 1 3.8281 -1.2217 2.1283 31 1 7.0932 -1.5957 0.4673 32 1 1.4799 1.0512 2.2396 33 1 2.2666 -0.2030 3.2276 34 1 -0.3395 1.1486 4.0057 35 1 0.4689 -0.1536 4.9115 36 1 -2.3644 -0.2423 3.7758 37 1 -1.9266 -0.0785 5.4944 38 1 -0.8104 -2.2777 5.4394 39 1 -2.4992 -2.4358 4.8973 40 1 -0.9498 -3.6833 3.4064 41 1 -1.7568 -2.3559 2.5381 42 1 0.6522 -2.4628 2.1560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232651440.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:14 Heat of formation + Delta-G solvation = -4.313317 kcal Electronic energy + Delta-G solvation = -18617.136813 eV Core-core repulsion = 16017.561610 eV Total energy + Delta-G solvation = -2599.575203 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.00337 -37.02443 -32.80122 -31.91424 -31.39366 -30.43190 -27.09554 -26.62528 -24.77249 -23.06301 -22.08729 -21.26855 -19.36325 -18.63130 -16.35522 -15.87709 -15.65247 -14.70839 -14.20830 -14.08756 -14.00039 -13.38003 -13.25714 -13.08736 -12.77735 -12.41223 -12.23799 -12.03741 -11.73270 -11.31338 -11.19390 -10.96495 -10.82515 -10.72400 -10.62195 -10.47883 -10.26232 -10.17544 -10.13585 -9.85305 -9.62965 -9.07744 -8.38031 -7.83553 -7.11341 -5.97664 -3.98226 3.35700 3.40015 3.42670 4.45631 4.62041 4.85551 5.05101 5.06964 5.23437 5.37758 5.45726 5.53684 5.66845 5.70551 5.73086 5.80364 5.87597 5.96674 6.02553 6.04237 6.06229 6.09407 6.17087 6.24903 6.29526 6.35122 6.36840 6.46795 6.52028 6.72135 6.81829 6.94257 7.40879 7.49299 7.61899 7.85868 8.04526 8.19379 8.30993 8.62949 9.09029 9.65391 11.13067 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028495 B = 0.006411 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.403579 B = 4366.764035 C = 4689.844911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 C -0.183 4.183 4 N -0.527 5.527 5 C 0.193 3.807 6 C -0.504 4.504 7 H 0.060 0.940 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.051 3.949 15 C 0.086 3.914 16 H 0.048 0.952 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.116 4.116 20 C 0.059 3.941 21 N -0.677 5.677 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.047 0.953 29 H -0.005 1.005 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.019 0.981 42 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.064 2.895 4.275 14.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 C -0.242 4.242 4 N -0.251 5.251 5 C 0.068 3.932 6 C -0.542 4.542 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.078 4.078 15 C -0.024 4.024 16 H 0.065 0.935 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.071 4.071 21 N -0.312 5.312 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.107 0.893 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.013 0.987 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.038 0.962 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -13.826 2.449 4.937 14.884 hybrid contribution 0.328 0.307 -1.557 1.621 sum -13.499 2.755 3.380 14.185 Atomic orbital electron populations 1.22115 0.96703 1.01161 1.00169 1.21570 0.93066 0.92137 0.95942 1.22434 1.02862 0.98611 1.00299 1.62227 1.15131 1.48399 0.99355 1.19769 0.79947 0.95682 0.97797 1.21116 0.91442 1.28161 1.13511 0.92136 1.24965 0.96699 0.96322 0.96576 1.69950 1.00925 1.44495 1.38496 0.86609 0.77216 0.81294 0.82544 1.20441 1.21467 1.20238 1.22218 0.95621 0.95696 0.94248 1.21804 0.96949 0.88573 0.95105 0.93456 1.21636 0.96694 0.98741 0.98290 1.21535 0.97418 0.95970 1.00594 1.21579 1.00230 0.95370 0.98252 1.21849 0.90807 0.98734 0.95750 1.60172 1.22549 1.03955 1.44553 0.93118 0.93526 0.92592 0.89314 0.91446 0.93494 0.93389 0.98704 0.95175 0.92987 0.94385 0.91406 0.92405 0.91410 0.92764 0.92476 0.91359 0.92491 0.91463 0.96236 0.81533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.57 37.16 0.28 -1.91 16 2 C 0.08 1.52 2.80 -67.71 -0.19 1.34 16 3 C -0.18 -3.25 8.60 37.16 0.32 -2.93 16 4 N -0.53 -10.78 3.52 -228.08 -0.80 -11.58 16 5 C 0.19 4.91 4.47 -4.98 -0.02 4.88 16 6 C -0.50 -13.87 8.45 -34.44 -0.29 -14.16 16 7 H 0.06 1.65 7.13 -52.49 -0.37 1.27 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 10 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.05 0.92 4.23 -3.82 -0.02 0.90 16 15 C 0.09 1.32 2.18 -67.73 -0.15 1.17 16 16 H 0.05 0.72 4.37 -51.93 -0.23 0.50 16 17 C -0.12 -1.53 5.37 -26.65 -0.14 -1.68 16 18 C -0.12 -1.36 6.00 -26.60 -0.16 -1.52 16 19 C -0.12 -1.37 6.09 -26.65 -0.16 -1.53 16 20 C 0.06 0.78 6.55 -3.84 -0.03 0.75 16 21 N -0.68 -10.88 6.50 -106.77 -0.69 -11.58 16 22 H 0.05 0.73 6.12 -51.93 -0.32 0.41 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.87 7.59 -51.93 -0.39 0.48 16 25 H 0.09 1.86 6.75 -51.93 -0.35 1.51 16 26 H 0.07 1.38 6.38 -51.92 -0.33 1.05 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.79 5.96 -51.93 -0.31 0.48 16 29 H 0.00 -0.13 6.15 -51.93 -0.32 -0.45 16 30 H 0.03 0.84 7.79 -51.93 -0.40 0.44 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.04 0.66 5.42 -51.93 -0.28 0.37 16 33 H 0.07 1.33 7.54 -51.93 -0.39 0.94 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.36 6.50 7.95 -39.29 -0.31 6.19 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -28.14 310.80 -9.13 -37.27 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.38 Total: 3.75 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -0.65 Total: -13.22 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.76 Total: -49.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.14 -9.13 -37.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232651440.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.953 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds