Wall clock time and date at job start Mon Mar 30 2020 04:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47118 * 2 1 4 4 N 1.46903 * 109.47308 * 119.99766 * 2 1 3 5 5 C 1.46891 * 111.00409 * 175.65307 * 4 2 1 6 6 C 1.50705 * 109.46880 * 293.95455 * 5 4 2 7 7 H 1.07992 * 120.00021 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00030 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99729 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00001 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47227 * 59.99676 * 10 8 6 12 12 H 1.48501 * 109.47081 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47095 * 299.99422 * 10 8 6 14 14 C 1.46907 * 110.99685 * 299.60678 * 4 2 1 15 15 C 1.53003 * 109.47210 * 87.50469 * 14 4 2 16 16 H 1.09005 * 109.45223 * 296.63618 * 15 14 4 17 17 C 1.53030 * 109.46077 * 176.66918 * 15 14 4 18 18 C 1.53122 * 109.27956 * 180.80445 * 17 15 14 19 19 C 1.53124 * 109.15896 * 57.64901 * 18 17 15 20 20 C 1.53036 * 109.27767 * 302.34810 * 19 18 17 21 21 N 1.46842 * 109.52475 * 59.18252 * 20 19 18 22 22 H 1.09000 * 109.47323 * 311.60043 * 1 2 3 23 23 H 1.09002 * 109.46677 * 71.59587 * 1 2 3 24 24 H 1.08993 * 109.47430 * 191.59610 * 1 2 3 25 25 H 1.09000 * 109.47713 * 239.99780 * 2 1 3 26 26 H 1.09007 * 109.47252 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46901 * 299.99707 * 3 2 1 28 28 H 1.08991 * 109.47269 * 59.99856 * 3 2 1 29 29 H 1.08997 * 109.47708 * 53.95022 * 5 4 2 30 30 H 1.08997 * 109.47460 * 173.95429 * 5 4 2 31 31 H 0.96999 * 119.99465 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.46972 * 327.50446 * 14 4 2 33 33 H 1.08998 * 109.47019 * 207.50512 * 14 4 2 34 34 H 1.08996 * 109.50828 * 60.85705 * 17 15 14 35 35 H 1.09005 * 109.53408 * 300.75736 * 17 15 14 36 36 H 1.08996 * 109.52022 * 297.74749 * 18 17 15 37 37 H 1.08992 * 109.52543 * 177.55542 * 18 17 15 38 38 H 1.08999 * 109.50287 * 62.28697 * 19 18 17 39 39 H 1.08999 * 109.50025 * 182.41261 * 19 18 17 40 40 H 1.09004 * 109.46323 * 179.19639 * 20 19 18 41 41 H 1.08998 * 109.46742 * 299.16165 * 20 19 18 42 42 H 1.00896 * 111.00436 * 174.15807 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4844 -0.8027 1.1826 6 6 3.9073 -1.7035 0.0509 7 1 3.1624 -2.1497 -0.5913 8 6 5.2451 -1.9588 -0.1641 9 7 6.1521 -1.4158 0.6183 10 14 5.7693 -3.0748 -1.5673 11 1 5.3016 -2.5031 -2.8556 12 1 7.2500 -3.1864 -1.5843 13 1 5.1731 -4.4216 -1.3779 14 6 1.5563 -0.0208 2.4211 15 6 0.1841 -0.5703 2.8161 16 1 -0.5395 -0.3353 2.0355 17 6 -0.2612 0.0689 4.1332 18 6 -1.6254 -0.4987 4.5349 19 6 -1.5209 -2.0218 4.6534 20 6 -1.0390 -2.6003 3.3211 21 7 0.2695 -2.0269 2.9816 22 1 -0.3634 0.6823 0.7685 23 1 -0.3633 0.3245 -0.9751 24 1 -0.3634 -1.0066 0.2066 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.9217 0.1858 1.0429 30 1 3.8281 -1.2217 2.1283 31 1 7.0932 -1.5957 0.4673 32 1 1.4799 1.0512 2.2396 33 1 2.2666 -0.2030 3.2276 34 1 -0.3395 1.1486 4.0057 35 1 0.4689 -0.1536 4.9115 36 1 -2.3644 -0.2423 3.7758 37 1 -1.9266 -0.0785 5.4944 38 1 -0.8104 -2.2777 5.4394 39 1 -2.4992 -2.4358 4.8973 40 1 -0.9498 -3.6833 3.4064 41 1 -1.7568 -2.3559 2.5381 42 1 0.6522 -2.4628 2.1560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232651440.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:14 Heat of formation + Delta-G solvation = -22.586813 kcal Electronic energy + Delta-G solvation = -18617.929211 eV Core-core repulsion = 16017.561610 eV Total energy + Delta-G solvation = -2600.367601 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.35365 -38.38930 -34.89297 -33.11095 -32.56286 -32.05659 -28.82304 -28.06884 -26.32384 -24.23682 -23.92661 -22.49398 -20.49103 -20.16698 -18.29934 -17.42141 -16.98847 -16.54590 -15.76759 -15.34772 -15.25400 -14.78220 -14.62758 -14.45989 -14.04664 -13.84030 -13.71914 -13.31223 -13.21055 -12.98754 -12.66120 -12.57972 -12.47296 -12.34356 -12.15025 -11.90584 -11.61833 -11.51069 -11.45792 -11.28837 -11.16150 -10.87594 -10.55531 -9.07907 -8.79628 -8.15695 -6.24513 1.41214 1.44259 1.51776 2.42328 3.16620 3.30423 3.47499 4.01130 4.06324 4.12377 4.17019 4.28617 4.34118 4.51281 4.52611 4.58159 4.66567 4.71826 4.77892 4.86224 4.89637 4.93079 5.00321 5.03096 5.09181 5.11540 5.17236 5.23615 5.28292 5.32723 5.41192 5.49945 5.56523 5.59218 5.71349 6.12837 6.41794 6.50175 6.71716 6.77793 6.93016 7.44522 8.94972 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028495 B = 0.006411 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.403579 B = 4366.764035 C = 4689.844911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.077 3.923 3 C -0.175 4.175 4 N -0.527 5.527 5 C 0.211 3.789 6 C -0.514 4.514 7 H 0.061 0.939 8 C 0.000 4.000 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.268 1.268 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.055 3.945 15 C 0.094 3.906 16 H 0.058 0.942 17 C -0.114 4.114 18 C -0.113 4.113 19 C -0.114 4.114 20 C 0.057 3.943 21 N -0.695 5.695 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.072 0.928 28 H 0.061 0.939 29 H -0.030 1.030 30 H -0.007 1.007 31 H 0.262 0.738 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.531 2.985 3.700 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.031 4.031 3 C -0.234 4.234 4 N -0.250 5.250 5 C 0.085 3.915 6 C -0.552 4.552 7 H 0.080 0.920 8 C -0.197 4.197 9 N -0.577 5.577 10 Si 0.790 3.210 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.195 1.195 14 C -0.074 4.074 15 C -0.016 4.016 16 H 0.075 0.925 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.072 4.072 21 N -0.329 5.329 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.080 0.920 29 H -0.012 1.012 30 H 0.011 0.989 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.331 2.547 4.373 17.097 hybrid contribution 1.085 0.303 -1.346 1.755 sum -15.246 2.851 3.028 15.803 Atomic orbital electron populations 1.21981 0.93264 1.01536 1.02028 1.21634 0.95672 0.92010 0.93821 1.22339 1.00370 0.98472 1.02219 1.62154 1.11698 1.49894 1.01292 1.19349 0.83194 0.93653 0.95306 1.21422 0.91756 1.28200 1.13870 0.92050 1.25870 0.96779 0.97835 0.99223 1.70091 1.01233 1.46023 1.40384 0.85500 0.76774 0.79309 0.79397 1.19310 1.21139 1.19470 1.22256 0.96680 0.96278 0.92187 1.21745 0.94925 0.88342 0.96600 0.92482 1.21640 0.97582 0.99557 0.96505 1.21525 0.96171 0.95545 1.01832 1.21584 1.01069 0.95761 0.96797 1.21948 0.89505 0.98956 0.96834 1.60203 1.24539 1.04367 1.43817 0.91704 0.91277 0.92840 0.91968 0.95161 0.90945 0.92009 1.01246 0.98888 0.92936 0.93398 0.94069 0.91004 0.92887 0.91731 0.90701 0.92499 0.90122 0.91201 0.95468 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 7.57 71.98 0.54 -3.11 16 2 C 0.08 2.85 2.80 44.91 0.13 2.98 16 3 C -0.18 -6.12 8.60 71.98 0.62 -5.50 16 4 N -0.53 -22.08 3.52 -875.52 -3.08 -25.16 16 5 C 0.21 11.32 4.47 85.56 0.38 11.70 16 6 C -0.51 -29.19 8.45 25.60 0.22 -28.98 16 7 H 0.06 3.40 7.13 -2.91 -0.02 3.38 16 8 C 0.00 0.03 5.46 84.66 0.46 0.49 16 9 N -0.94 -57.40 13.29 21.45 0.28 -57.12 16 10 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 14 C 0.05 1.98 4.23 86.30 0.36 2.34 16 15 C 0.09 2.77 2.18 44.94 0.10 2.87 16 16 H 0.06 1.59 4.37 -2.38 -0.01 1.58 16 17 C -0.11 -2.83 5.37 30.65 0.16 -2.67 16 18 C -0.11 -2.26 6.00 30.68 0.18 -2.07 16 19 C -0.11 -2.40 6.09 30.65 0.19 -2.22 16 20 C 0.06 1.41 6.55 86.33 0.57 1.98 16 21 N -0.70 -22.05 6.50 -491.70 -3.20 -25.25 16 22 H 0.06 1.64 6.12 -2.39 -0.01 1.63 16 23 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 1.53 7.59 -2.39 -0.02 1.52 16 25 H 0.06 2.62 6.75 -2.39 -0.02 2.61 16 26 H 0.03 1.26 6.38 -2.38 -0.02 1.25 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 1.96 5.96 -2.39 -0.01 1.94 16 29 H -0.03 -1.74 6.15 -2.39 -0.01 -1.75 16 30 H -0.01 -0.42 7.79 -2.39 -0.02 -0.44 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.05 1.62 5.42 -2.39 -0.01 1.61 16 33 H 0.04 1.69 7.54 -2.39 -0.02 1.68 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.46 8.14 -2.38 -0.02 1.45 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.35 12.57 7.95 -89.70 -0.71 11.86 16 Total: -1.00 -62.71 310.80 0.22 -62.50 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.27 Total: 20.26 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 3.91 Total: -22.19 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -5.99 Total: -107.53 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -62.71 0.22 -62.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232651440.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.910 kcal (2) G-P(sol) polarization free energy of solvation -62.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds