Wall clock time and date at job start Mon Mar 30 2020 04:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46635 * 2 1 4 4 N 1.46899 * 109.47120 * 119.99389 * 2 1 3 5 5 C 1.46902 * 110.99938 * 166.84325 * 4 2 1 6 6 C 1.50700 * 109.47208 * 293.96029 * 5 4 2 7 7 H 1.08007 * 119.99712 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00349 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00394 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 119.99616 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47336 * 90.00013 * 10 8 6 12 12 H 1.48497 * 109.46807 * 209.99884 * 10 8 6 13 13 H 1.48503 * 109.46874 * 329.99587 * 10 8 6 14 14 C 1.46897 * 111.00169 * 290.80085 * 4 2 1 15 15 C 1.53003 * 109.47113 * 163.93061 * 14 4 2 16 16 H 1.08997 * 109.46239 * 63.72431 * 15 14 4 17 17 C 1.53030 * 109.46509 * 183.70739 * 15 14 4 18 18 C 1.53117 * 109.27958 * 179.18476 * 17 15 14 19 19 C 1.53118 * 109.21449 * 302.31075 * 18 17 15 20 20 C 1.53171 * 109.20314 * 57.62302 * 19 18 17 21 21 N 1.46845 * 109.56091 * 300.86239 * 20 19 18 22 22 H 1.08999 * 109.47290 * 305.88528 * 1 2 3 23 23 H 1.08996 * 109.46992 * 65.89106 * 1 2 3 24 24 H 1.09004 * 109.46971 * 185.88609 * 1 2 3 25 25 H 1.08998 * 109.47380 * 240.00130 * 2 1 3 26 26 H 1.08999 * 109.46794 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47037 * 299.99708 * 3 2 1 28 28 H 1.08999 * 109.47638 * 59.99835 * 3 2 1 29 29 H 1.08997 * 109.46623 * 53.95544 * 5 4 2 30 30 H 1.08989 * 109.47118 * 173.95711 * 5 4 2 31 31 H 0.97000 * 120.00191 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.47179 * 43.92917 * 14 4 2 33 33 H 1.08998 * 109.47269 * 283.92479 * 14 4 2 34 34 H 1.09003 * 109.50148 * 59.24149 * 17 15 14 35 35 H 1.09003 * 109.50461 * 299.12750 * 17 15 14 36 36 H 1.08997 * 109.52285 * 62.25133 * 18 17 15 37 37 H 1.08999 * 109.52264 * 182.37948 * 18 17 15 38 38 H 1.08996 * 109.50325 * 177.62809 * 19 18 17 39 39 H 1.09007 * 109.50096 * 297.75020 * 19 18 17 40 40 H 1.08999 * 109.44601 * 180.83296 * 20 19 18 41 41 H 1.09004 * 109.44463 * 60.89089 * 20 19 18 42 42 H 1.00907 * 110.99964 * 185.84254 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4543 -0.9883 1.0878 6 6 3.6765 -1.9870 -0.0187 7 1 2.8360 -2.3645 -0.5822 8 6 4.9527 -2.4189 -0.3116 9 7 5.1465 -3.2909 -1.2768 10 14 6.4062 -1.7665 0.6636 11 1 6.6471 -2.6420 1.8387 12 1 7.6148 -1.7525 -0.1991 13 1 6.1124 -0.3864 1.1265 14 6 1.7361 0.0887 2.4109 15 6 1.8833 -0.8079 3.6419 16 1 2.9174 -1.1421 3.7262 17 6 1.4984 -0.0197 4.8958 18 6 1.6277 -0.9267 6.1227 19 6 0.7365 -2.1576 5.9355 20 6 1.1437 -2.8838 4.6498 21 7 1.0018 -1.9744 3.5056 22 1 -0.3634 0.6024 0.8326 23 1 -0.3633 0.4198 -0.9380 24 1 -0.3633 -1.0223 0.1054 25 1 1.8934 -0.5138 -0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9565 0.8899 29 1 3.9981 -0.0707 0.8635 30 1 3.8141 -1.4030 2.0293 31 1 6.0443 -3.5950 -1.4826 32 1 0.7184 0.4762 2.3633 33 1 2.4384 0.9193 2.4804 34 1 0.4687 0.3265 4.8061 35 1 2.1629 0.8374 5.0052 36 1 2.6651 -1.2418 6.2350 37 1 1.3140 -0.3820 7.0131 38 1 0.8570 -2.8270 6.7872 39 1 -0.3052 -1.8449 5.8622 40 1 0.5018 -3.7527 4.5049 41 1 2.1813 -3.2082 4.7294 42 1 1.1730 -2.4575 2.6364 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232651773.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:17 Heat of formation + Delta-G solvation = -10.633646 kcal Electronic energy + Delta-G solvation = -18655.413737 eV Core-core repulsion = 16055.564464 eV Total energy + Delta-G solvation = -2599.849273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.90200 -37.14430 -32.72020 -32.26817 -31.45413 -30.30509 -27.51485 -26.62114 -24.88125 -23.08018 -21.88106 -21.33992 -19.39336 -18.44958 -16.73092 -16.22820 -15.02558 -14.84833 -14.51059 -14.18632 -13.88677 -13.53240 -13.22457 -13.11364 -12.80524 -12.57377 -12.29917 -12.15297 -11.82796 -11.60682 -11.36033 -11.05838 -10.90336 -10.66062 -10.59962 -10.56391 -10.38999 -10.18744 -9.99602 -9.84287 -9.76070 -9.19784 -8.57567 -7.91932 -7.28520 -6.06269 -4.02749 3.25588 3.33683 3.35634 4.40303 4.59533 4.70275 5.03367 5.07196 5.20374 5.26609 5.44063 5.56689 5.62410 5.67491 5.75564 5.78460 5.91909 5.94928 6.03849 6.05119 6.07429 6.09982 6.14638 6.16633 6.26423 6.28040 6.35873 6.43277 6.49970 6.65388 6.73716 6.81585 7.01166 7.09111 7.54199 7.63469 7.97620 8.03344 8.12869 8.66948 9.03336 9.56353 11.06791 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018631 B = 0.008606 C = 0.006992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.516593 B = 3252.919632 C = 4003.578136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 C -0.180 4.180 4 N -0.518 5.518 5 C 0.158 3.842 6 C -0.506 4.506 7 H 0.082 0.918 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.871 3.129 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.269 1.269 14 C 0.057 3.943 15 C 0.094 3.906 16 H 0.035 0.965 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.115 4.115 20 C 0.056 3.944 21 N -0.677 5.677 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.047 0.953 29 H -0.010 1.010 30 H 0.020 0.980 31 H 0.263 0.737 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.743 6.483 10.881 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 C -0.239 4.239 4 N -0.242 5.242 5 C 0.031 3.969 6 C -0.544 4.544 7 H 0.100 0.900 8 C -0.132 4.132 9 N -0.539 5.539 10 Si 0.698 3.302 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.072 4.072 15 C -0.016 4.016 16 H 0.053 0.947 17 C -0.150 4.150 18 C -0.157 4.157 19 C -0.153 4.153 20 C -0.074 4.074 21 N -0.312 5.312 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.008 0.992 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.385 6.240 11.062 15.219 hybrid contribution 2.370 0.645 0.252 2.469 sum -6.015 6.886 11.314 14.546 Atomic orbital electron populations 1.21810 0.95683 1.02009 0.99942 1.21602 0.94130 0.91651 0.95326 1.22445 1.01819 0.98890 1.00782 1.62053 1.18700 1.43094 1.00305 1.20224 0.83816 0.95528 0.97296 1.21046 0.94201 1.23272 1.15905 0.90034 1.24884 0.98532 0.94828 0.94999 1.69889 1.21888 1.31740 1.30395 0.86931 0.82901 0.79944 0.80392 1.20335 1.21234 1.19343 1.22149 1.00366 0.94077 0.90565 1.21414 0.94370 0.91939 0.93893 0.94705 1.21600 1.01790 0.97530 0.94075 1.21547 0.99733 0.96760 0.97673 1.21597 1.00113 0.96751 0.96842 1.21888 0.98849 0.95094 0.91549 1.60263 1.55956 1.09417 1.05525 0.93653 0.93469 0.91912 0.88533 0.92559 0.93088 0.93428 0.99236 0.96244 0.92733 0.90869 0.95559 0.91401 0.92312 0.92572 0.92403 0.92368 0.91471 0.91297 0.95752 0.81313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.09 37.16 0.34 -1.80 16 2 C 0.08 1.51 2.77 -67.71 -0.19 1.33 16 3 C -0.18 -3.03 8.45 37.16 0.31 -2.71 16 4 N -0.52 -10.27 3.46 -228.09 -0.79 -11.06 16 5 C 0.16 3.72 3.54 -4.98 -0.02 3.70 16 6 C -0.51 -13.99 8.88 -34.44 -0.31 -14.30 16 7 H 0.08 2.45 7.46 -52.48 -0.39 2.06 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 10 Si 0.87 21.52 27.47 -169.99 -4.67 16.85 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 14 C 0.06 0.97 3.27 -3.82 -0.01 0.96 16 15 C 0.09 1.54 2.44 -67.73 -0.17 1.37 16 16 H 0.04 0.65 6.74 -51.93 -0.35 0.30 16 17 C -0.11 -1.49 5.37 -26.66 -0.14 -1.64 16 18 C -0.12 -1.45 6.00 -26.61 -0.16 -1.61 16 19 C -0.12 -1.39 6.11 -26.58 -0.16 -1.55 16 20 C 0.06 0.80 6.55 -3.77 -0.02 0.77 16 21 N -0.68 -11.00 6.50 -106.69 -0.69 -11.69 16 22 H 0.04 0.66 6.64 -51.93 -0.34 0.31 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.10 2.08 6.61 -51.93 -0.34 1.74 16 26 H 0.06 1.04 6.71 -51.93 -0.35 0.70 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.73 6.66 -51.93 -0.35 0.38 16 29 H -0.01 -0.24 5.62 -51.93 -0.29 -0.53 16 30 H 0.02 0.47 5.90 -51.94 -0.31 0.17 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 32 H 0.07 1.18 6.20 -51.93 -0.32 0.85 16 33 H 0.03 0.45 7.16 -51.93 -0.37 0.08 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.36 6.72 7.94 -39.29 -0.31 6.41 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -28.50 311.59 -8.85 -37.35 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.55 Total: 4.00 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -0.62 Total: -13.60 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.71 Total: -49.30 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.50 -8.85 -37.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232651773.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.720 kcal (2) G-P(sol) polarization free energy of solvation -28.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds