Wall clock time and date at job start Mon Mar 30 2020 04:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46635 * 2 1 4 4 N 1.46899 * 109.47120 * 119.99389 * 2 1 3 5 5 C 1.46902 * 110.99938 * 166.84325 * 4 2 1 6 6 C 1.50700 * 109.47208 * 293.96029 * 5 4 2 7 7 H 1.08007 * 119.99712 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00349 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00394 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 119.99616 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47336 * 90.00013 * 10 8 6 12 12 H 1.48497 * 109.46807 * 209.99884 * 10 8 6 13 13 H 1.48503 * 109.46874 * 329.99587 * 10 8 6 14 14 C 1.46897 * 111.00169 * 290.80085 * 4 2 1 15 15 C 1.53003 * 109.47113 * 163.93061 * 14 4 2 16 16 H 1.08997 * 109.46239 * 63.72431 * 15 14 4 17 17 C 1.53030 * 109.46509 * 183.70739 * 15 14 4 18 18 C 1.53117 * 109.27958 * 179.18476 * 17 15 14 19 19 C 1.53118 * 109.21449 * 302.31075 * 18 17 15 20 20 C 1.53171 * 109.20314 * 57.62302 * 19 18 17 21 21 N 1.46845 * 109.56091 * 300.86239 * 20 19 18 22 22 H 1.08999 * 109.47290 * 305.88528 * 1 2 3 23 23 H 1.08996 * 109.46992 * 65.89106 * 1 2 3 24 24 H 1.09004 * 109.46971 * 185.88609 * 1 2 3 25 25 H 1.08998 * 109.47380 * 240.00130 * 2 1 3 26 26 H 1.08999 * 109.46794 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47037 * 299.99708 * 3 2 1 28 28 H 1.08999 * 109.47638 * 59.99835 * 3 2 1 29 29 H 1.08997 * 109.46623 * 53.95544 * 5 4 2 30 30 H 1.08989 * 109.47118 * 173.95711 * 5 4 2 31 31 H 0.97000 * 120.00191 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.47179 * 43.92917 * 14 4 2 33 33 H 1.08998 * 109.47269 * 283.92479 * 14 4 2 34 34 H 1.09003 * 109.50148 * 59.24149 * 17 15 14 35 35 H 1.09003 * 109.50461 * 299.12750 * 17 15 14 36 36 H 1.08997 * 109.52285 * 62.25133 * 18 17 15 37 37 H 1.08999 * 109.52264 * 182.37948 * 18 17 15 38 38 H 1.08996 * 109.50325 * 177.62809 * 19 18 17 39 39 H 1.09007 * 109.50096 * 297.75020 * 19 18 17 40 40 H 1.08999 * 109.44601 * 180.83296 * 20 19 18 41 41 H 1.09004 * 109.44463 * 60.89089 * 20 19 18 42 42 H 1.00907 * 110.99964 * 185.84254 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4543 -0.9883 1.0878 6 6 3.6765 -1.9870 -0.0187 7 1 2.8360 -2.3645 -0.5822 8 6 4.9527 -2.4189 -0.3116 9 7 5.1465 -3.2909 -1.2768 10 14 6.4062 -1.7665 0.6636 11 1 6.6471 -2.6420 1.8387 12 1 7.6148 -1.7525 -0.1991 13 1 6.1124 -0.3864 1.1265 14 6 1.7361 0.0887 2.4109 15 6 1.8833 -0.8079 3.6419 16 1 2.9174 -1.1421 3.7262 17 6 1.4984 -0.0197 4.8958 18 6 1.6277 -0.9267 6.1227 19 6 0.7365 -2.1576 5.9355 20 6 1.1437 -2.8838 4.6498 21 7 1.0018 -1.9744 3.5056 22 1 -0.3634 0.6024 0.8326 23 1 -0.3633 0.4198 -0.9380 24 1 -0.3633 -1.0223 0.1054 25 1 1.8934 -0.5138 -0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9565 0.8899 29 1 3.9981 -0.0707 0.8635 30 1 3.8141 -1.4030 2.0293 31 1 6.0443 -3.5950 -1.4826 32 1 0.7184 0.4762 2.3633 33 1 2.4384 0.9193 2.4804 34 1 0.4687 0.3265 4.8061 35 1 2.1629 0.8374 5.0052 36 1 2.6651 -1.2418 6.2350 37 1 1.3140 -0.3820 7.0131 38 1 0.8570 -2.8270 6.7872 39 1 -0.3052 -1.8449 5.8622 40 1 0.5018 -3.7527 4.5049 41 1 2.1813 -3.2082 4.7294 42 1 1.1730 -2.4575 2.6364 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232651773.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:16 Heat of formation + Delta-G solvation = -29.703342 kcal Electronic energy + Delta-G solvation = -18656.240661 eV Core-core repulsion = 16055.564464 eV Total energy + Delta-G solvation = -2600.676197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24544 -38.50138 -34.84694 -33.52870 -32.60712 -31.92912 -29.21842 -27.96459 -26.33777 -24.21721 -23.75407 -22.59289 -20.51232 -20.02627 -18.84586 -17.52415 -16.62830 -16.19056 -16.07404 -15.85387 -15.07356 -14.85693 -14.71784 -14.50912 -14.43690 -13.87776 -13.72139 -13.47046 -13.38764 -12.94317 -12.75413 -12.62432 -12.46710 -12.17367 -12.00416 -11.94455 -11.80723 -11.62281 -11.52051 -11.25716 -11.19701 -11.00154 -10.77758 -9.23778 -8.87390 -8.29308 -6.30320 1.28514 1.29887 1.39911 2.30415 3.03694 3.19522 3.41506 3.96390 4.00982 4.10007 4.16262 4.29586 4.34025 4.44597 4.50303 4.58396 4.63069 4.66887 4.77441 4.83001 4.86907 4.88391 4.94132 4.99935 5.04364 5.07245 5.12859 5.14178 5.23159 5.26760 5.33654 5.44345 5.51792 5.54198 5.59902 6.04963 6.32512 6.48406 6.60199 6.73637 6.77181 7.32826 8.87169 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018631 B = 0.008606 C = 0.006992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.516593 B = 3252.919632 C = 4003.578136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.076 3.924 3 C -0.172 4.172 4 N -0.526 5.526 5 C 0.174 3.826 6 C -0.505 4.505 7 H 0.042 0.958 8 C 0.011 3.989 9 N -0.946 5.946 10 Si 0.937 3.063 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.255 1.255 14 C 0.062 3.938 15 C 0.093 3.907 16 H 0.006 0.994 17 C -0.106 4.106 18 C -0.119 4.119 19 C -0.109 4.109 20 C 0.051 3.949 21 N -0.678 5.678 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.068 0.932 29 H -0.015 1.015 30 H 0.016 0.984 31 H 0.265 0.735 32 H 0.090 0.910 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.008 0.992 42 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.484 8.391 13.158 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.032 4.032 3 C -0.231 4.231 4 N -0.250 5.250 5 C 0.047 3.953 6 C -0.544 4.544 7 H 0.060 0.940 8 C -0.186 4.186 9 N -0.587 5.587 10 Si 0.762 3.238 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.179 1.179 14 C -0.066 4.066 15 C -0.017 4.017 16 H 0.024 0.976 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.147 4.147 20 C -0.079 4.079 21 N -0.310 5.310 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.002 0.998 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.027 0.973 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.151 8.167 13.362 18.138 hybrid contribution 2.504 0.003 -0.516 2.557 sum -6.647 8.170 12.846 16.612 Atomic orbital electron populations 1.21699 0.93003 1.01787 1.01763 1.21609 0.96191 0.92245 0.93162 1.22350 1.00238 0.97731 1.02772 1.61977 1.16059 1.44871 1.02064 1.19889 0.86396 0.93882 0.95172 1.21252 0.93089 1.23646 1.16394 0.94017 1.25736 1.01679 0.95144 0.96087 1.70037 1.22723 1.33565 1.32414 0.85860 0.79068 0.79930 0.78965 1.19517 1.20683 1.17917 1.22207 1.01208 0.93903 0.89320 1.21469 0.92926 0.92200 0.95130 0.97562 1.21578 1.02405 0.97599 0.92872 1.21568 0.99379 0.96703 0.98015 1.21576 1.00237 0.96930 0.95948 1.22026 0.98186 0.95513 0.92129 1.60353 1.55618 1.09711 1.05344 0.91792 0.91573 0.93198 0.92718 0.94867 0.91148 0.91353 0.99755 0.96594 0.92585 0.89157 0.95258 0.90548 0.91254 0.93363 0.89940 0.90484 0.90969 0.90583 0.97342 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.71 9.09 71.98 0.65 -3.06 16 2 C 0.08 2.83 2.77 44.92 0.12 2.95 16 3 C -0.17 -5.50 8.45 71.98 0.61 -4.90 16 4 N -0.53 -20.92 3.46 -875.53 -3.03 -23.95 16 5 C 0.17 8.30 3.54 85.56 0.30 8.61 16 6 C -0.51 -29.08 8.88 25.60 0.23 -28.85 16 7 H 0.04 2.67 7.46 -2.91 -0.02 2.65 16 8 C 0.01 0.63 5.47 84.65 0.46 1.09 16 9 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 10 Si 0.94 44.91 27.47 68.60 1.88 46.79 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 13 H -0.26 -11.57 6.54 99.48 0.65 -10.92 16 14 C 0.06 2.00 3.27 86.30 0.28 2.28 16 15 C 0.09 2.92 2.44 44.94 0.11 3.03 16 16 H 0.01 0.24 6.74 -2.39 -0.02 0.22 16 17 C -0.11 -2.54 5.37 30.64 0.16 -2.38 16 18 C -0.12 -2.53 6.00 30.67 0.18 -2.35 16 19 C -0.11 -2.35 6.11 30.69 0.19 -2.16 16 20 C 0.05 1.41 6.55 86.37 0.57 1.97 16 21 N -0.68 -21.56 6.50 -491.46 -3.20 -24.76 16 22 H 0.06 1.66 6.64 -2.39 -0.02 1.65 16 23 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.05 2.47 6.61 -2.39 -0.02 2.45 16 26 H 0.03 1.20 6.71 -2.39 -0.02 1.18 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 1.89 6.66 -2.39 -0.02 1.88 16 29 H -0.02 -0.74 5.62 -2.39 -0.01 -0.75 16 30 H 0.02 0.78 5.90 -2.39 -0.01 0.77 16 31 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 32 H 0.09 2.63 6.20 -2.39 -0.01 2.62 16 33 H 0.03 0.94 7.16 -2.39 -0.02 0.93 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.35 13.01 7.94 -89.69 -0.71 12.30 16 Total: -1.00 -63.44 311.59 0.04 -63.40 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.21 Total: 21.39 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 3.87 Total: -23.75 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -5.92 Total: -107.82 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -63.44 0.04 -63.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232651773.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.692 kcal (2) G-P(sol) polarization free energy of solvation -63.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds