Wall clock time and date at job start Mon Mar 30 2020 03:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47076 * 2 1 4 4 N 1.46895 * 109.47658 * 239.99957 * 2 1 3 5 5 C 1.46900 * 111.00476 * 192.51052 * 4 2 1 6 6 C 1.53002 * 109.47019 * 66.04350 * 5 4 2 7 7 C 1.50701 * 109.47114 * 180.02562 * 6 5 4 8 8 H 1.08008 * 120.00022 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00342 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99759 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00186 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47176 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47124 * 120.00310 * 11 9 7 14 14 H 1.48499 * 109.47293 * 240.00210 * 11 9 7 15 15 C 1.46899 * 111.00160 * 68.55191 * 4 2 1 16 16 C 1.52999 * 109.47196 * 195.89122 * 15 4 2 17 17 H 1.08992 * 110.37120 * 299.06410 * 16 15 4 18 18 C 1.54381 * 110.40922 * 176.70946 * 16 15 4 19 19 C 1.54262 * 105.05846 * 217.36800 * 18 16 15 20 20 C 1.54372 * 105.06228 * 0.02562 * 19 18 16 21 21 N 1.48557 * 104.59684 * 23.85061 * 20 19 18 22 22 H 1.09002 * 109.46747 * 54.59397 * 1 2 3 23 23 H 1.08997 * 109.46753 * 174.59432 * 1 2 3 24 24 H 1.09003 * 109.47212 * 294.59543 * 1 2 3 25 25 H 1.09002 * 109.47310 * 119.99517 * 2 1 3 26 26 H 1.09000 * 109.46773 * 60.00077 * 3 2 1 27 27 H 1.09003 * 109.47025 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.46916 * 299.99383 * 3 2 1 29 29 H 1.08997 * 109.47661 * 186.04203 * 5 4 2 30 30 H 1.09002 * 109.46953 * 306.04459 * 5 4 2 31 31 H 1.09008 * 109.46985 * 299.99951 * 6 5 4 32 32 H 1.08993 * 109.47209 * 59.99960 * 6 5 4 33 33 H 0.97003 * 120.00023 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47088 * 315.89358 * 15 4 2 35 35 H 1.08996 * 109.47112 * 75.89419 * 15 4 2 36 36 H 1.08997 * 110.32892 * 336.26531 * 18 16 15 37 37 H 1.08997 * 110.32075 * 98.37695 * 18 16 15 38 38 H 1.09007 * 110.31923 * 118.89637 * 19 18 16 39 39 H 1.08999 * 110.32667 * 241.00309 * 19 18 16 40 40 H 1.09006 * 110.41126 * 142.62696 * 20 19 18 41 41 H 1.09004 * 110.41322 * 264.95052 * 20 19 18 42 42 H 1.00905 * 111.00470 * 200.96005 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 3.4575 -0.9747 -1.0941 6 6 3.6984 -1.9823 0.0318 7 6 5.1734 -2.2715 0.1401 8 1 5.8696 -1.7848 -0.5271 9 6 5.6344 -3.1563 1.0917 10 7 4.7869 -3.7485 1.9044 11 14 7.4628 -3.5152 1.2255 12 1 8.1979 -2.7276 0.2035 13 1 7.9432 -3.1394 2.5794 14 1 7.7007 -4.9636 1.0003 15 6 1.7225 0.0812 -2.4122 16 6 1.8760 -0.8176 -3.6408 17 1 2.8982 -1.1885 -3.7143 18 6 1.4888 -0.0485 -4.9222 19 6 0.7692 -1.0850 -5.8097 20 6 0.7816 -2.3928 -4.9897 21 7 0.9143 -1.9485 -3.5783 22 1 -0.3633 0.5954 -0.8376 23 1 -0.3633 -1.0231 -0.0968 24 1 -0.3634 0.4277 0.9344 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 3.8163 -1.3898 -2.0360 30 1 3.9941 -0.0513 -0.8763 31 1 3.3397 -1.5672 0.9737 32 1 3.1618 -2.9057 -0.1860 33 1 5.1112 -4.3713 2.5736 34 1 0.7006 0.4568 -2.3622 35 1 2.4146 0.9199 -2.4869 36 1 0.8167 0.7750 -4.6811 37 1 2.3814 0.3262 -5.4231 38 1 -0.2562 -0.7701 -6.0040 39 1 1.3077 -1.2191 -6.7479 40 1 -0.1515 -2.9386 -5.1302 41 1 1.6308 -3.0133 -5.2763 42 1 1.2690 -2.6929 -2.9966 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232654913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:40 Heat of formation + Delta-G solvation = -9.543283 kcal Electronic energy + Delta-G solvation = -18220.379327 eV Core-core repulsion = 15620.577335 eV Total energy + Delta-G solvation = -2599.801991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.98171 -37.28968 -33.26425 -31.76609 -30.44398 -30.02144 -27.97281 -26.79033 -24.93060 -23.43351 -21.19908 -20.91724 -20.12130 -18.34539 -16.60247 -16.43398 -15.47198 -14.77947 -14.69210 -14.39549 -14.20497 -13.41477 -13.29969 -12.84959 -12.29121 -12.24536 -12.10634 -11.89985 -11.66389 -11.56392 -11.38505 -11.12623 -11.12043 -10.91949 -10.76814 -10.58511 -10.55501 -10.39282 -10.11970 -9.70355 -9.26784 -9.06264 -8.31732 -8.25497 -7.52582 -5.98136 -4.00210 3.31114 3.38723 3.42379 4.34523 4.47711 4.55635 4.88497 4.91129 5.13079 5.31403 5.36971 5.40304 5.52934 5.61599 5.67756 5.74720 5.79545 5.87193 5.91002 5.96823 6.01385 6.02138 6.08781 6.16055 6.19988 6.26350 6.35737 6.43523 6.53768 6.71972 6.78445 7.03609 7.06471 7.62190 7.67132 7.70869 7.87470 7.97005 8.13730 8.46706 9.07602 9.63371 11.13124 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021432 B = 0.006297 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.160327 B = 4445.229143 C = 5172.413473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.073 3.927 3 C -0.182 4.182 4 N -0.525 5.525 5 C 0.059 3.941 6 C 0.030 3.970 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.059 3.941 10 N -0.892 5.892 11 Si 0.889 3.111 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.069 3.931 16 C 0.072 3.928 17 H 0.049 0.951 18 C -0.121 4.121 19 C -0.122 4.122 20 C 0.031 3.969 21 N -0.648 5.648 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.017 0.983 32 H 0.023 0.977 33 H 0.259 0.741 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.294 7.535 -10.920 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.035 4.035 3 C -0.241 4.241 4 N -0.248 5.248 5 C -0.068 4.068 6 C -0.008 4.008 7 C -0.559 4.559 8 H 0.070 0.930 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.717 3.283 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.060 4.060 16 C -0.039 4.039 17 H 0.067 0.933 18 C -0.160 4.160 19 C -0.160 4.160 20 C -0.098 4.098 21 N -0.278 5.278 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.182 7.344 -10.746 15.928 hybrid contribution 2.445 0.058 0.024 2.445 sum -6.738 7.402 -10.721 14.667 Atomic orbital electron populations 1.21780 0.95114 1.02266 1.00168 1.21719 0.94952 0.91952 0.94923 1.22454 1.01812 0.98640 1.01194 1.62250 1.17407 1.44456 1.00696 1.22375 0.84782 0.98674 1.00992 1.19084 0.95880 0.93711 0.92101 1.21242 0.92819 1.24984 1.16886 0.92953 1.24980 0.97489 0.96020 0.95768 1.69983 1.33809 1.29114 1.20256 0.86584 0.85793 0.78052 0.77842 1.19856 1.21046 1.21015 1.22058 1.00481 0.93659 0.89807 1.22470 0.94635 0.92705 0.94062 0.93316 1.22317 0.99992 0.98258 0.95386 1.22252 1.00735 0.95229 0.97800 1.22894 1.00527 0.96281 0.90128 1.63570 1.46526 1.10744 1.06942 0.93448 0.91746 0.93271 0.88926 0.92796 0.92442 0.93156 0.92613 0.96206 0.96471 0.95846 0.93098 0.90675 0.95357 0.91295 0.91836 0.91446 0.91935 0.90677 0.94702 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.09 37.16 0.34 -1.64 16 2 C 0.07 1.24 2.79 -67.71 -0.19 1.05 16 3 C -0.18 -2.76 8.46 37.16 0.31 -2.44 16 4 N -0.52 -9.34 4.29 -226.66 -0.97 -10.31 16 5 C 0.06 1.23 4.64 -3.82 -0.02 1.21 16 6 C 0.03 0.76 4.93 -27.88 -0.14 0.63 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 11 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.07 1.04 3.20 -3.83 -0.01 1.03 16 16 C 0.07 1.03 3.12 -66.06 -0.21 0.82 16 17 H 0.05 0.78 6.69 -51.93 -0.35 0.43 16 18 C -0.12 -1.41 6.55 -25.35 -0.17 -1.58 16 19 C -0.12 -1.30 7.00 -25.35 -0.18 -1.48 16 20 C 0.03 0.38 7.47 -2.19 -0.02 0.36 16 21 N -0.65 -9.42 7.18 -102.74 -0.74 -10.16 16 22 H 0.05 0.64 6.60 -51.93 -0.34 0.30 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 1.83 6.01 -51.93 -0.31 1.52 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.95 6.68 -51.93 -0.35 0.61 16 28 H 0.05 0.69 6.67 -51.93 -0.35 0.35 16 29 H 0.06 1.17 6.44 -51.93 -0.33 0.83 16 30 H 0.02 0.42 6.53 -51.93 -0.34 0.08 16 31 H 0.02 0.47 6.33 -51.92 -0.33 0.14 16 32 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.07 1.11 6.15 -51.93 -0.32 0.79 16 35 H 0.03 0.43 7.14 -51.93 -0.37 0.06 16 36 H 0.07 0.77 7.84 -51.93 -0.41 0.37 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.35 5.58 8.92 -39.29 -0.35 5.23 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -29.14 318.77 -9.36 -38.51 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.49 Total: 2.11 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -0.68 Total: -15.51 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.97 Total: -46.63 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.14 -9.36 -38.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232654913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.965 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds