Wall clock time and date at job start Mon Mar 30 2020 03:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47591 * 2 1 4 4 N 1.46905 * 109.47135 * 181.43237 * 3 2 1 5 5 C 1.46902 * 110.99963 * 297.23614 * 4 3 2 6 6 C 1.53002 * 109.46961 * 288.28111 * 5 4 3 7 7 C 1.50696 * 109.47072 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00102 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00370 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00507 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99709 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46922 * 89.99943 * 11 9 7 13 13 H 1.48501 * 109.47042 * 209.99684 * 11 9 7 14 14 H 1.48499 * 109.47117 * 330.00203 * 11 9 7 15 15 C 1.46893 * 110.99712 * 61.19154 * 4 3 2 16 16 C 1.52996 * 109.47653 * 66.04280 * 15 4 3 17 17 H 1.09000 * 109.90914 * 296.10224 * 16 15 4 18 18 C 1.53995 * 109.92018 * 174.99612 * 16 15 4 19 19 C 1.54590 * 105.22704 * 239.17679 * 18 16 15 20 20 C 1.55099 * 102.84893 * 338.15437 * 19 18 16 21 21 N 1.47907 * 110.07833 * 57.30843 * 16 15 4 22 22 H 1.08990 * 109.47437 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46887 * 300.00603 * 1 2 3 24 24 H 1.09001 * 109.46717 * 59.99851 * 1 2 3 25 25 H 1.08994 * 109.47244 * 239.99326 * 2 1 3 26 26 H 1.09001 * 109.46717 * 120.00149 * 2 1 3 27 27 H 1.08997 * 109.46881 * 61.43253 * 3 2 1 28 28 H 1.08996 * 109.47070 * 301.43613 * 3 2 1 29 29 H 1.09004 * 109.47060 * 48.27645 * 5 4 3 30 30 H 1.08991 * 109.46917 * 168.28073 * 5 4 3 31 31 H 1.08998 * 109.46714 * 300.01191 * 6 5 4 32 32 H 1.09001 * 109.47471 * 60.01449 * 6 5 4 33 33 H 0.96998 * 120.00297 * 180.02562 * 10 9 7 34 34 H 1.09005 * 109.47131 * 306.04495 * 15 4 3 35 35 H 1.09003 * 109.47098 * 186.04479 * 15 4 3 36 36 H 1.08997 * 110.30801 * 358.14347 * 18 16 15 37 37 H 1.09001 * 110.30278 * 120.21443 * 18 16 15 38 38 H 1.09005 * 110.72455 * 96.45077 * 19 18 16 39 39 H 1.09003 * 110.72506 * 219.73635 * 19 18 16 40 40 H 1.09011 * 110.59306 * 278.87474 * 20 19 18 41 41 H 1.09000 * 110.83226 * 155.84759 * 20 19 18 42 42 H 1.00895 * 110.99965 * 24.26452 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5088 1.4425 -0.0346 5 6 4.0637 0.8047 1.1668 6 6 3.8524 1.7205 2.3741 7 6 4.4222 1.0665 3.6064 8 1 4.8881 0.0947 3.5357 9 6 4.3488 1.7087 4.8242 10 7 4.8457 1.1378 5.8998 11 14 3.5437 3.3899 4.9465 12 1 2.0945 3.2255 5.2261 13 1 4.1755 4.1624 6.0462 14 1 3.7210 4.1180 3.6645 15 6 4.0065 0.7917 -1.2538 16 6 3.6136 1.6263 -2.4744 17 1 2.5282 1.6557 -2.5701 18 6 4.2363 1.0213 -3.7462 19 6 5.1206 2.1425 -4.3383 20 6 4.5113 3.4265 -3.7174 21 7 4.1452 3.0002 -2.3424 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6980 1.9488 0.9025 28 1 1.6560 1.9637 -0.8768 29 1 3.5593 -0.1461 1.3393 30 1 5.1302 0.6299 1.0255 31 1 4.3565 2.6713 2.2015 32 1 2.7858 1.8951 2.5155 33 1 4.7937 1.5894 6.7566 34 1 3.5701 -0.2036 -1.3385 35 1 5.0923 0.7092 -1.2043 36 1 4.8449 0.1531 -3.4933 37 1 3.4554 0.7420 -4.4536 38 1 6.1584 2.0195 -4.0283 39 1 5.0415 2.1628 -5.4253 40 1 3.6260 3.7378 -4.2722 41 1 5.2474 4.2299 -3.6880 42 1 4.9482 3.0202 -1.7319 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233037385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:44 Heat of formation + Delta-G solvation = -29.708708 kcal Electronic energy + Delta-G solvation = -18053.265736 eV Core-core repulsion = 15452.589306 eV Total energy + Delta-G solvation = -2600.676430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32347 -38.43950 -35.27026 -33.78995 -32.54197 -30.73300 -30.20263 -27.35511 -26.41070 -24.11052 -23.14128 -22.26153 -21.03356 -20.40323 -19.00393 -17.17720 -16.84132 -16.49676 -16.25914 -15.92798 -15.31347 -15.00547 -14.75525 -14.57913 -14.47079 -14.16540 -13.69061 -13.11754 -12.90870 -12.79552 -12.58177 -12.51064 -12.38488 -12.24644 -12.16147 -11.92950 -11.80678 -11.77425 -11.52132 -11.35849 -11.34562 -11.06936 -10.72775 -9.39632 -8.96787 -8.29304 -6.32608 1.35805 1.38184 1.52195 2.37256 3.00489 3.06815 3.52783 3.82236 3.88807 4.02624 4.06663 4.15136 4.27369 4.41148 4.44768 4.47756 4.55374 4.61638 4.66386 4.68453 4.81360 4.90377 4.98107 5.00964 5.05753 5.08619 5.11438 5.18190 5.19842 5.25901 5.36798 5.37534 5.47178 5.52761 5.66450 6.02310 6.19976 6.33750 6.38609 6.57898 6.75289 7.32387 8.87467 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023358 B = 0.005991 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.453385 B = 4672.465485 C = 5206.528571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.161 4.161 3 C 0.059 3.941 4 N -0.533 5.533 5 C 0.079 3.921 6 C 0.005 3.995 7 C -0.530 4.530 8 H 0.032 0.968 9 C 0.009 3.991 10 N -0.951 5.951 11 Si 0.948 3.052 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.250 1.250 15 C 0.049 3.951 16 C 0.085 3.915 17 H 0.077 0.923 18 C -0.145 4.145 19 C -0.151 4.151 20 C 0.039 3.961 21 N -0.673 5.673 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.025 0.975 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.013 0.987 33 H 0.266 0.734 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.874 1.548 -21.913 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.200 4.200 3 C -0.069 4.069 4 N -0.255 5.255 5 C -0.048 4.048 6 C -0.032 4.032 7 C -0.568 4.568 8 H 0.050 0.950 9 C -0.188 4.188 10 N -0.592 5.592 11 Si 0.772 3.228 12 H -0.193 1.193 13 H -0.209 1.209 14 H -0.174 1.174 15 C -0.079 4.079 16 C -0.026 4.026 17 H 0.095 0.905 18 C -0.185 4.185 19 C -0.190 4.190 20 C -0.091 4.091 21 N -0.301 5.301 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.323 2.433 -21.676 22.452 hybrid contribution 0.546 -1.077 0.722 1.407 sum -4.777 1.356 -20.954 21.534 Atomic orbital electron populations 1.21631 0.94206 1.01995 1.02059 1.22130 0.97752 0.98734 1.01373 1.22190 0.87016 0.95501 1.02180 1.62169 1.07801 1.54207 1.01314 1.21853 0.98105 0.95306 0.89572 1.19357 0.95765 0.95868 0.92257 1.21432 1.37770 1.04396 0.93234 0.95004 1.25919 0.95661 1.02049 0.95166 1.70060 1.48179 1.40836 1.00128 0.85682 0.78897 0.79626 0.78608 1.19251 1.20853 1.17352 1.22499 0.99651 0.96041 0.89718 1.22305 0.99855 0.87810 0.92617 0.90482 1.22840 0.99766 0.98870 0.97012 1.23098 0.99101 0.95310 1.01539 1.23225 0.99774 0.96899 0.89188 1.62701 1.36155 1.21556 1.09669 0.92206 0.93401 0.91395 0.91135 0.93805 0.92659 0.89554 0.95696 0.92682 0.96385 0.96919 0.92494 0.93624 0.91561 0.91274 0.90326 0.91785 0.89689 0.90395 0.90425 0.84469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.91 71.98 0.71 -2.50 16 2 C -0.16 -4.40 5.30 30.59 0.16 -4.23 16 3 C 0.06 1.79 4.98 86.30 0.43 2.22 16 4 N -0.53 -17.49 4.47 -896.24 -4.00 -21.50 16 5 C 0.08 3.22 4.77 86.30 0.41 3.64 16 6 C 0.01 0.26 4.08 29.85 0.12 0.38 16 7 C -0.53 -31.39 9.66 25.60 0.25 -31.14 16 8 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 9 C 0.01 0.53 5.47 84.65 0.46 0.99 16 10 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 11 Si 0.95 45.99 27.47 68.60 1.88 47.88 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 14 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 15 C 0.05 1.28 3.82 86.30 0.33 1.61 16 16 C 0.08 1.87 3.17 45.06 0.14 2.01 16 17 H 0.08 1.77 6.74 -2.39 -0.02 1.75 16 18 C -0.15 -2.49 6.56 31.47 0.21 -2.29 16 19 C -0.15 -2.36 7.08 31.85 0.23 -2.14 16 20 C 0.04 0.70 7.55 86.71 0.65 1.35 16 21 N -0.67 -16.14 7.20 -479.87 -3.46 -19.59 16 22 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 1.73 6.23 -2.39 -0.01 1.71 16 26 H 0.04 1.43 6.30 -2.39 -0.02 1.42 16 27 H 0.05 1.92 6.59 -2.39 -0.02 1.90 16 28 H 0.09 2.35 6.51 -2.39 -0.02 2.34 16 29 H 0.02 1.04 5.90 -2.38 -0.01 1.03 16 30 H 0.05 2.27 7.81 -2.39 -0.02 2.26 16 31 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 32 H 0.01 0.61 6.13 -2.39 -0.01 0.60 16 33 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 34 H 0.05 1.14 6.01 -2.38 -0.01 1.13 16 35 H 0.07 1.77 7.86 -2.39 -0.02 1.75 16 36 H 0.07 1.18 7.69 -2.39 -0.02 1.16 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.34 8.87 8.41 -89.70 -0.75 8.12 16 Total: -1.00 -65.45 317.04 -1.00 -66.45 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.17 Total: 17.31 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 4.11 Total: -30.08 kcal Atomic # 7 Polarization: -94.40 SS G_CDS: -7.16 Total: -101.56 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.88 Total: 47.88 kcal Total: -65.45 -1.00 -66.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233037385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.740 kcal (2) G-P(sol) polarization free energy of solvation -65.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds