Wall clock time and date at job start Mon Mar 30 2020 03:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46850 * 2 1 4 4 N 1.46903 * 109.46612 * 185.02610 * 3 2 1 5 5 C 1.46900 * 110.99851 * 164.89569 * 4 3 2 6 6 C 1.53004 * 109.47367 * 293.95836 * 5 4 3 7 7 C 1.50695 * 109.46945 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00776 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99568 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00123 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99961 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46969 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47264 * 119.99831 * 11 9 7 14 14 H 1.48496 * 109.47088 * 240.00127 * 11 9 7 15 15 C 1.46901 * 111.00329 * 288.84735 * 4 3 2 16 16 C 1.52999 * 109.47212 * 164.49482 * 15 4 3 17 17 H 1.09006 * 110.33188 * 66.63263 * 16 15 4 18 18 C 1.54909 * 110.37333 * 188.88395 * 16 15 4 19 19 C 1.55260 * 101.59268 * 155.82164 * 18 16 15 20 20 C 1.54318 * 103.08878 * 324.48371 * 19 18 16 21 21 N 1.47444 * 107.22976 * 22.21003 * 20 19 18 22 22 H 1.08993 * 109.47167 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47308 * 300.00450 * 1 2 3 24 24 H 1.09000 * 109.46539 * 60.00069 * 1 2 3 25 25 H 1.08997 * 109.47308 * 239.99550 * 2 1 3 26 26 H 1.09005 * 109.46841 * 119.99266 * 2 1 3 27 27 H 1.09000 * 109.47168 * 305.02678 * 3 2 1 28 28 H 1.09005 * 109.47005 * 65.03060 * 3 2 1 29 29 H 1.09003 * 109.47310 * 53.95614 * 5 4 3 30 30 H 1.09000 * 109.47481 * 173.95290 * 5 4 3 31 31 H 1.08994 * 109.46457 * 299.99601 * 6 5 4 32 32 H 1.08997 * 109.46776 * 59.99473 * 6 5 4 33 33 H 0.96994 * 119.99899 * 180.02562 * 10 9 7 34 34 H 1.08997 * 109.47162 * 284.50017 * 15 4 3 35 35 H 1.09004 * 109.46362 * 44.49846 * 15 4 3 36 36 H 1.09003 * 110.98798 * 273.99432 * 18 16 15 37 37 H 1.08997 * 110.99054 * 37.81353 * 18 16 15 38 38 H 1.09005 * 110.74033 * 206.05071 * 19 18 16 39 39 H 1.08995 * 110.76151 * 82.93957 * 19 18 16 40 40 H 1.08998 * 109.89365 * 262.80296 * 20 19 18 41 41 H 1.09001 * 109.88811 * 141.61097 * 20 19 18 42 42 H 1.00896 * 111.00224 * 238.71691 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5040 1.4442 -0.1213 5 6 4.0007 2.7788 -0.4822 6 6 3.5184 3.1395 -1.8887 7 6 4.0275 4.5088 -2.2585 8 1 4.6347 5.0660 -1.5604 9 6 3.7189 5.0500 -3.4885 10 7 2.9808 4.3709 -4.3392 11 14 4.3505 6.7470 -3.9473 12 1 5.1525 7.2968 -2.8249 13 1 5.2001 6.6476 -5.1611 14 1 3.2006 7.6461 -4.2203 15 6 4.1354 0.9641 1.1151 16 6 5.5983 0.6124 0.8375 17 1 6.1642 1.5116 0.5935 18 6 6.2228 -0.1023 2.0617 19 6 7.3797 -0.8995 1.4009 20 6 6.7869 -1.3094 0.0364 21 7 5.6916 -0.3692 -0.2641 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 1.6050 1.9817 -0.8415 28 1 1.7520 1.9297 0.9317 29 1 3.6231 3.5120 0.2306 30 1 5.0905 2.7790 -0.4606 31 1 3.8961 2.4064 -2.6013 32 1 2.4286 3.1393 -1.9102 33 1 2.7640 4.7515 -5.2047 34 1 4.0870 1.7445 1.8745 35 1 3.6098 0.0779 1.4709 36 1 6.6059 0.6204 2.7822 37 1 5.5040 -0.7747 2.5299 38 1 7.6291 -1.7801 1.9930 39 1 8.2569 -0.2668 1.2657 40 1 6.3982 -2.3262 0.0914 41 1 7.5536 -1.2444 -0.7356 42 1 4.8180 -0.8590 -0.3869 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233037450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:47 Heat of formation + Delta-G solvation = -14.389471 kcal Electronic energy + Delta-G solvation = -17944.600246 eV Core-core repulsion = 15344.588108 eV Total energy + Delta-G solvation = -2600.012138 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.92694 -36.93037 -33.44142 -32.64485 -30.47459 -29.82739 -28.73685 -25.70211 -24.90042 -22.66218 -21.07013 -20.73445 -20.67632 -19.26773 -16.48594 -15.95597 -15.67112 -14.97232 -14.57233 -14.43583 -14.12974 -13.74099 -13.48772 -13.04764 -12.68303 -12.30024 -12.11601 -11.84305 -11.82402 -11.50969 -11.35281 -11.07880 -11.02303 -10.90400 -10.73361 -10.69679 -10.51596 -10.42740 -10.10292 -9.65726 -9.23750 -9.00606 -8.24807 -8.09313 -7.58492 -5.92124 -3.93540 3.35721 3.42952 3.46998 4.22388 4.51879 4.65974 4.74180 4.85957 5.06039 5.25586 5.32345 5.37559 5.43871 5.50472 5.53464 5.60718 5.66124 5.78619 5.81051 5.89707 5.93861 5.99415 6.06518 6.10613 6.16083 6.28583 6.36816 6.42650 6.54724 6.61453 6.67574 7.10499 7.21848 7.62165 7.68768 7.77784 7.89920 8.02386 8.20562 8.53110 9.14210 9.69404 11.19350 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017937 B = 0.006366 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.638627 B = 4397.079683 C = 5472.485637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.050 3.950 4 N -0.526 5.526 5 C 0.066 3.934 6 C 0.030 3.970 7 C -0.518 4.518 8 H 0.052 0.948 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.889 3.111 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.048 3.952 16 C 0.087 3.913 17 H 0.086 0.914 18 C -0.151 4.151 19 C -0.140 4.140 20 C 0.045 3.955 21 N -0.660 5.660 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.021 0.979 29 H 0.013 0.987 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.014 0.986 33 H 0.259 0.741 34 H 0.032 0.968 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 -11.326 12.460 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.077 4.077 4 N -0.250 5.250 5 C -0.061 4.061 6 C -0.007 4.007 7 C -0.557 4.557 8 H 0.071 0.929 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.718 3.282 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.081 4.081 16 C -0.023 4.023 17 H 0.103 0.897 18 C -0.191 4.191 19 C -0.178 4.178 20 C -0.085 4.085 21 N -0.290 5.290 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.039 0.961 29 H 0.031 0.969 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.440 -11.216 11.447 16.210 hybrid contribution -0.262 0.998 1.093 1.503 sum 2.178 -10.218 12.540 16.322 Atomic orbital electron populations 1.21733 0.96206 1.01050 1.01821 1.21519 0.94919 0.97293 1.01775 1.22212 0.88559 0.96287 1.00683 1.62050 1.04528 1.28034 1.30368 1.22312 0.99261 0.85040 0.99445 1.19081 0.96111 0.95848 0.89703 1.21244 1.32021 1.01863 1.00565 0.92925 1.24979 0.95307 0.97497 0.96517 1.69986 1.37958 1.37470 1.07858 0.86579 0.78617 0.84624 0.78419 1.19847 1.21016 1.21138 1.22368 0.94287 0.99363 0.92113 1.22512 0.95305 0.96413 0.88086 0.89655 1.23229 0.97840 0.99414 0.98570 1.22778 0.98505 0.99864 0.96696 1.22664 0.95189 0.94787 0.95818 1.61632 1.08355 1.16286 1.42718 0.93130 0.93294 0.92344 0.91029 0.93190 0.89366 0.96104 0.96856 0.91817 0.95446 0.96731 0.93167 0.94993 0.91619 0.91071 0.91698 0.91609 0.91175 0.93693 0.91112 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.62 5.89 -26.73 -0.16 -1.77 16 3 C 0.05 0.85 4.84 -3.82 -0.02 0.83 16 4 N -0.53 -9.44 4.12 -234.62 -0.97 -10.41 16 5 C 0.07 1.43 4.75 -3.82 -0.02 1.41 16 6 C 0.03 0.79 4.93 -27.88 -0.14 0.66 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 11 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 C 0.05 0.70 4.21 -3.82 -0.02 0.68 16 16 C 0.09 1.24 3.26 -66.19 -0.22 1.02 16 17 H 0.09 1.40 6.89 -51.93 -0.36 1.04 16 18 C -0.15 -1.68 6.51 -24.53 -0.16 -1.84 16 19 C -0.14 -1.48 6.94 -24.84 -0.17 -1.65 16 20 C 0.05 0.54 7.59 -2.84 -0.02 0.52 16 21 N -0.66 -9.81 7.10 -103.84 -0.74 -10.54 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.62 6.69 -51.93 -0.35 0.28 16 27 H 0.09 1.73 5.95 -51.93 -0.31 1.42 16 28 H 0.02 0.34 8.06 -51.93 -0.42 -0.08 16 29 H 0.01 0.29 8.12 -51.93 -0.42 -0.13 16 30 H 0.06 1.40 6.52 -51.93 -0.34 1.06 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.01 0.40 6.29 -51.93 -0.33 0.08 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.03 0.47 8.06 -51.93 -0.42 0.05 16 35 H 0.07 0.86 6.23 -51.93 -0.32 0.54 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.67 7.98 -51.93 -0.41 0.26 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.34 5.05 8.30 -39.29 -0.33 4.73 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -30.17 325.35 -9.82 -39.99 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.77 Total: 0.94 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -0.96 Total: -15.32 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.97 Total: -47.56 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.17 -9.82 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233037450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.597 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds