Wall clock time and date at job start Mon Mar 30 2020 03:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46850 * 2 1 4 4 N 1.46903 * 109.46612 * 185.02610 * 3 2 1 5 5 C 1.46900 * 110.99851 * 164.89569 * 4 3 2 6 6 C 1.53004 * 109.47367 * 293.95836 * 5 4 3 7 7 C 1.50695 * 109.46945 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00776 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99568 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00123 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99961 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46969 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47264 * 119.99831 * 11 9 7 14 14 H 1.48496 * 109.47088 * 240.00127 * 11 9 7 15 15 C 1.46901 * 111.00329 * 288.84735 * 4 3 2 16 16 C 1.52999 * 109.47212 * 164.49482 * 15 4 3 17 17 H 1.09006 * 110.33188 * 66.63263 * 16 15 4 18 18 C 1.54909 * 110.37333 * 188.88395 * 16 15 4 19 19 C 1.55260 * 101.59268 * 155.82164 * 18 16 15 20 20 C 1.54318 * 103.08878 * 324.48371 * 19 18 16 21 21 N 1.47444 * 107.22976 * 22.21003 * 20 19 18 22 22 H 1.08993 * 109.47167 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47308 * 300.00450 * 1 2 3 24 24 H 1.09000 * 109.46539 * 60.00069 * 1 2 3 25 25 H 1.08997 * 109.47308 * 239.99550 * 2 1 3 26 26 H 1.09005 * 109.46841 * 119.99266 * 2 1 3 27 27 H 1.09000 * 109.47168 * 305.02678 * 3 2 1 28 28 H 1.09005 * 109.47005 * 65.03060 * 3 2 1 29 29 H 1.09003 * 109.47310 * 53.95614 * 5 4 3 30 30 H 1.09000 * 109.47481 * 173.95290 * 5 4 3 31 31 H 1.08994 * 109.46457 * 299.99601 * 6 5 4 32 32 H 1.08997 * 109.46776 * 59.99473 * 6 5 4 33 33 H 0.96994 * 119.99899 * 180.02562 * 10 9 7 34 34 H 1.08997 * 109.47162 * 284.50017 * 15 4 3 35 35 H 1.09004 * 109.46362 * 44.49846 * 15 4 3 36 36 H 1.09003 * 110.98798 * 273.99432 * 18 16 15 37 37 H 1.08997 * 110.99054 * 37.81353 * 18 16 15 38 38 H 1.09005 * 110.74033 * 206.05071 * 19 18 16 39 39 H 1.08995 * 110.76151 * 82.93957 * 19 18 16 40 40 H 1.08998 * 109.89365 * 262.80296 * 20 19 18 41 41 H 1.09001 * 109.88811 * 141.61097 * 20 19 18 42 42 H 1.00896 * 111.00224 * 238.71691 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5040 1.4442 -0.1213 5 6 4.0007 2.7788 -0.4822 6 6 3.5184 3.1395 -1.8887 7 6 4.0275 4.5088 -2.2585 8 1 4.6347 5.0660 -1.5604 9 6 3.7189 5.0500 -3.4885 10 7 2.9808 4.3709 -4.3392 11 14 4.3505 6.7470 -3.9473 12 1 5.1525 7.2968 -2.8249 13 1 5.2001 6.6476 -5.1611 14 1 3.2006 7.6461 -4.2203 15 6 4.1354 0.9641 1.1151 16 6 5.5983 0.6124 0.8375 17 1 6.1642 1.5116 0.5935 18 6 6.2228 -0.1023 2.0617 19 6 7.3797 -0.8995 1.4009 20 6 6.7869 -1.3094 0.0364 21 7 5.6916 -0.3692 -0.2641 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 1.6050 1.9817 -0.8415 28 1 1.7520 1.9297 0.9317 29 1 3.6231 3.5120 0.2306 30 1 5.0905 2.7790 -0.4606 31 1 3.8961 2.4064 -2.6013 32 1 2.4286 3.1393 -1.9102 33 1 2.7640 4.7515 -5.2047 34 1 4.0870 1.7445 1.8745 35 1 3.6098 0.0779 1.4709 36 1 6.6059 0.6204 2.7822 37 1 5.5040 -0.7747 2.5299 38 1 7.6291 -1.7801 1.9930 39 1 8.2569 -0.2668 1.2657 40 1 6.3982 -2.3262 0.0914 41 1 7.5536 -1.2444 -0.7356 42 1 4.8180 -0.8590 -0.3869 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233037450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:47 Heat of formation + Delta-G solvation = -34.584861 kcal Electronic energy + Delta-G solvation = -17945.475984 eV Core-core repulsion = 15344.588108 eV Total energy + Delta-G solvation = -2600.887876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.10241 -38.23666 -35.35179 -34.12944 -32.10143 -30.81312 -30.22389 -27.17512 -26.47822 -24.21472 -22.47130 -22.03424 -21.67007 -20.70221 -18.56829 -17.20853 -16.83908 -16.48802 -16.24561 -15.73023 -15.58344 -15.06906 -14.73790 -14.29000 -14.16906 -13.87966 -13.45768 -13.29760 -13.04295 -12.88529 -12.86849 -12.49568 -12.41989 -12.31439 -12.08088 -11.94290 -11.82110 -11.60010 -11.54060 -11.38611 -11.14970 -11.09123 -10.50912 -9.22275 -9.00303 -8.18256 -6.29104 1.39212 1.40277 1.53286 2.40951 2.98664 3.14830 3.53598 3.81526 3.85644 3.98987 4.12179 4.21944 4.28008 4.41790 4.48989 4.54810 4.58160 4.64768 4.66655 4.73690 4.76604 4.91056 4.96540 5.01830 5.05164 5.10210 5.15257 5.19698 5.22876 5.38320 5.40470 5.44744 5.48976 5.74562 5.82595 6.14622 6.17635 6.39531 6.44089 6.69254 6.88461 7.39445 8.94148 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017937 B = 0.006366 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.638627 B = 4397.079683 C = 5472.485637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C 0.051 3.949 4 N -0.534 5.534 5 C 0.086 3.914 6 C 0.041 3.959 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.002 3.998 10 N -0.931 5.931 11 Si 0.965 3.035 12 H -0.263 1.263 13 H -0.278 1.278 14 H -0.276 1.276 15 C 0.053 3.947 16 C 0.085 3.915 17 H 0.056 0.944 18 C -0.140 4.140 19 C -0.134 4.134 20 C 0.043 3.957 21 N -0.687 5.687 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.030 0.970 29 H 0.011 0.989 30 H 0.058 0.942 31 H -0.011 1.011 32 H -0.007 1.007 33 H 0.263 0.737 34 H 0.036 0.964 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.478 -11.865 14.305 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.076 4.076 4 N -0.258 5.258 5 C -0.042 4.042 6 C 0.004 3.996 7 C -0.581 4.581 8 H 0.074 0.926 9 C -0.196 4.196 10 N -0.571 5.571 11 Si 0.789 3.211 12 H -0.187 1.187 13 H -0.203 1.203 14 H -0.202 1.202 15 C -0.076 4.076 16 C -0.025 4.025 17 H 0.074 0.926 18 C -0.180 4.180 19 C -0.173 4.173 20 C -0.087 4.087 21 N -0.318 5.318 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.008 0.992 32 H 0.011 0.989 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.904 -11.768 13.312 18.003 hybrid contribution -0.422 1.118 0.493 1.293 sum 2.483 -10.650 13.805 17.611 Atomic orbital electron populations 1.21714 0.94860 1.02376 1.01553 1.21439 0.96008 0.94822 1.02240 1.22207 0.87743 0.98274 0.99421 1.61961 1.05380 1.25483 1.32951 1.21874 0.98673 0.87239 0.96368 1.18869 0.94525 0.94297 0.91895 1.21656 1.32359 1.02936 1.01172 0.92577 1.25947 0.95288 1.02038 0.96336 1.70122 1.39020 1.39613 1.08382 0.85405 0.78273 0.79058 0.78335 1.18689 1.20335 1.20181 1.22433 0.94601 1.00142 0.90386 1.22427 0.94718 0.95703 0.89659 0.92622 1.23161 0.98060 0.99529 0.97222 1.22760 0.97963 1.00648 0.95896 1.22705 0.94265 0.95175 0.96515 1.61557 1.09044 1.17326 1.43830 0.90974 0.92280 0.93952 0.92301 0.90839 0.93125 0.95167 0.97041 0.92390 0.99221 0.98865 0.92815 0.94576 0.89160 0.90132 0.90071 0.89174 0.91648 0.91926 0.92166 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.91 71.98 0.71 -2.68 16 2 C -0.11 -2.84 5.89 30.60 0.18 -2.66 16 3 C 0.05 1.75 4.84 86.30 0.42 2.16 16 4 N -0.53 -19.39 4.12 -896.19 -3.70 -23.08 16 5 C 0.09 3.85 4.75 86.30 0.41 4.26 16 6 C 0.04 2.32 4.93 29.85 0.15 2.47 16 7 C -0.54 -32.31 9.11 25.60 0.23 -32.08 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.00 0.10 5.46 84.66 0.46 0.56 16 10 N -0.93 -58.58 13.29 21.45 0.28 -58.29 16 11 Si 0.96 45.69 29.54 68.60 2.03 47.71 16 12 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 C 0.05 1.47 4.21 86.30 0.36 1.83 16 16 C 0.09 2.35 3.26 45.39 0.15 2.49 16 17 H 0.06 1.85 6.89 -2.38 -0.02 1.84 16 18 C -0.14 -2.75 6.51 32.02 0.21 -2.54 16 19 C -0.13 -2.51 6.94 31.82 0.22 -2.29 16 20 C 0.04 0.97 7.59 86.65 0.66 1.63 16 21 N -0.69 -20.10 7.10 -482.45 -3.42 -23.52 16 22 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 1.61 6.69 -2.38 -0.02 1.60 16 27 H 0.05 2.09 5.95 -2.39 -0.01 2.08 16 28 H 0.03 0.96 8.06 -2.38 -0.02 0.94 16 29 H 0.01 0.51 8.12 -2.39 -0.02 0.49 16 30 H 0.06 2.64 6.52 -2.39 -0.02 2.62 16 31 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 32 H -0.01 -0.41 6.29 -2.39 -0.02 -0.43 16 33 H 0.26 15.45 8.31 -92.71 -0.77 14.67 16 34 H 0.04 1.00 8.06 -2.39 -0.02 0.98 16 35 H 0.09 2.10 6.23 -2.38 -0.01 2.09 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.36 7.98 -2.39 -0.02 1.34 16 38 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.34 9.84 8.30 -89.70 -0.74 9.09 16 Total: -1.00 -67.06 325.35 -0.43 -67.49 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.22 Total: 16.54 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 4.16 Total: -26.84 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -6.84 Total: -104.90 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -67.06 -0.43 -67.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233037450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.906 kcal (2) G-P(sol) polarization free energy of solvation -67.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds