Wall clock time and date at job start Mon Mar 30 2020 04:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46999 * 2 1 4 4 N 1.46900 * 109.47093 * 176.77181 * 3 2 1 5 5 C 1.46901 * 111.00053 * 76.00529 * 4 3 2 6 6 C 1.52995 * 109.47238 * 195.93153 * 5 4 3 7 7 H 1.08999 * 109.87917 * 294.11341 * 6 5 4 8 8 C 1.54320 * 109.88921 * 172.91809 * 6 5 4 9 9 C 1.55145 * 103.01672 * 218.30481 * 8 6 5 10 10 C 1.54903 * 101.65020 * 35.65402 * 9 8 6 11 11 N 1.47439 * 109.89143 * 55.14515 * 6 5 4 12 12 C 1.46896 * 111.00308 * 199.96215 * 4 3 2 13 13 H 1.08995 * 109.47316 * 188.30893 * 12 4 3 14 14 C 1.53006 * 109.46811 * 308.30632 * 12 4 3 15 15 C 1.50697 * 109.47255 * 68.30311 * 12 4 3 16 16 H 1.08001 * 119.99917 * 354.58861 * 15 12 4 17 17 C 1.37881 * 120.00040 * 174.58922 * 15 12 4 18 18 N 1.31511 * 119.99753 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99946 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47101 * 90.00021 * 19 17 15 21 21 H 1.48505 * 109.46839 * 210.00241 * 19 17 15 22 22 H 1.48503 * 109.47000 * 329.99829 * 19 17 15 23 23 H 1.09000 * 109.46704 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46417 * 299.99207 * 1 2 3 25 25 H 1.08992 * 109.47293 * 59.99786 * 1 2 3 26 26 H 1.09003 * 109.46895 * 240.00675 * 2 1 3 27 27 H 1.08992 * 109.47293 * 120.00214 * 2 1 3 28 28 H 1.09002 * 109.46969 * 56.77489 * 3 2 1 29 29 H 1.09001 * 109.47463 * 296.77557 * 3 2 1 30 30 H 1.09004 * 109.46951 * 315.92568 * 5 4 3 31 31 H 1.09001 * 109.47288 * 75.92750 * 5 4 3 32 32 H 1.08996 * 110.70769 * 336.68950 * 8 6 5 33 33 H 1.09004 * 110.70631 * 99.92390 * 8 6 5 34 34 H 1.08995 * 110.99206 * 277.55994 * 9 8 6 35 35 H 1.09005 * 111.01757 * 153.75854 * 9 8 6 36 36 H 1.09000 * 110.36795 * 204.09455 * 10 9 8 37 37 H 1.09004 * 110.37255 * 81.75913 * 10 9 8 38 38 H 1.00898 * 110.99988 * 356.14740 * 11 6 5 39 39 H 1.08992 * 109.47504 * 59.99523 * 14 12 4 40 40 H 1.08998 * 109.47286 * 180.02562 * 14 12 4 41 41 H 1.09002 * 109.47112 * 299.99796 * 14 12 4 42 42 H 0.97003 * 120.00217 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5070 1.4433 0.0780 5 6 4.1032 1.0870 -1.2164 6 6 5.5724 0.7108 -1.0150 7 1 6.1369 1.5838 -0.6874 8 6 6.1604 0.1658 -2.3336 9 6 7.0858 -0.9838 -1.8547 10 6 6.2867 -1.5491 -0.6541 11 7 5.6822 -0.3631 -0.0108 12 6 4.0085 2.7411 0.5492 13 1 5.0943 2.7658 0.4580 14 6 3.4000 3.8608 -0.2975 15 6 3.6209 2.9354 1.9924 16 1 2.9849 2.2133 2.4827 17 6 4.0783 4.0352 2.6870 18 7 4.8524 4.9148 2.0898 19 14 3.5984 4.2758 4.4762 20 1 4.6015 3.6166 5.3506 21 1 3.5504 5.7276 4.7849 22 1 2.2619 3.6744 4.7154 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6302 1.9727 0.8597 29 1 1.7247 1.9394 -0.9175 30 1 3.5664 0.2394 -1.6427 31 1 4.0356 1.9380 -1.8942 32 1 5.3700 -0.2188 -2.9781 33 1 6.7365 0.9361 -2.8462 34 1 8.0531 -0.5980 -1.5331 35 1 7.2073 -1.7376 -2.6326 36 1 6.9549 -2.0583 0.0403 37 1 5.5095 -2.2295 -1.0022 38 1 4.7794 -0.5852 0.3813 39 1 2.3141 3.8361 -0.2065 40 1 3.7724 4.8238 0.0518 41 1 3.6803 3.7203 -1.3415 42 1 5.1745 5.6883 2.5785 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233048453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:29 Heat of formation + Delta-G solvation = -6.791883 kcal Electronic energy + Delta-G solvation = -18588.128871 eV Core-core repulsion = 15988.446189 eV Total energy + Delta-G solvation = -2599.682682 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.78391 -36.81115 -33.45053 -32.23659 -29.96779 -29.65041 -28.08226 -25.35974 -25.07446 -23.34004 -21.03987 -20.76693 -20.26269 -18.52702 -16.35191 -15.80046 -15.49605 -14.95380 -14.53268 -14.17490 -13.82354 -13.31847 -12.94864 -12.70010 -12.34606 -12.20630 -11.91191 -11.69153 -11.44975 -11.41902 -11.18279 -10.94257 -10.86496 -10.69878 -10.57322 -10.47682 -10.38795 -10.32982 -10.15231 -9.91489 -9.45562 -8.81198 -8.29619 -7.79237 -7.11185 -5.93682 -3.94615 3.37069 3.43133 3.46004 4.46141 4.60954 4.96520 5.04735 5.09607 5.28741 5.40051 5.44845 5.51427 5.61182 5.72130 5.80917 5.85614 5.89568 6.01110 6.04929 6.13280 6.18308 6.20526 6.28265 6.31315 6.35424 6.45158 6.68248 6.75260 6.79581 6.86984 6.89625 7.18858 7.45294 7.57201 7.68745 7.91687 8.08024 8.24606 8.44109 8.67404 9.10774 9.69182 11.15158 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.008229 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.245874 B = 3401.629655 C = 4163.004453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.062 3.938 4 N -0.525 5.525 5 C 0.035 3.965 6 C 0.087 3.913 7 H 0.085 0.915 8 C -0.139 4.139 9 C -0.128 4.128 10 C 0.043 3.957 11 N -0.665 5.665 12 C 0.213 3.787 13 H 0.048 0.952 14 C -0.168 4.168 15 C -0.492 4.492 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.281 1.281 21 H -0.290 1.290 22 H -0.276 1.276 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.017 0.983 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.354 0.646 39 H 0.029 0.971 40 H 0.078 0.922 41 H 0.006 0.994 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 -9.792 -7.900 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.066 4.066 4 N -0.248 5.248 5 C -0.095 4.095 6 C -0.023 4.023 7 H 0.103 0.897 8 C -0.179 4.179 9 C -0.166 4.166 10 C -0.086 4.086 11 N -0.297 5.297 12 C 0.107 3.893 13 H 0.066 0.934 14 C -0.227 4.227 15 C -0.530 4.530 16 H 0.079 0.921 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.207 1.207 21 H -0.216 1.216 22 H -0.201 1.201 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.174 0.826 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.025 0.975 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.787 -9.733 -7.193 12.128 hybrid contribution -1.215 0.610 -0.269 1.386 sum -2.002 -9.123 -7.463 11.955 Atomic orbital electron populations 1.21726 0.96662 1.00699 1.01553 1.21561 0.94446 0.98262 1.01459 1.22002 0.89413 0.94827 1.00399 1.62245 1.04715 1.34634 1.23229 1.22593 0.95081 0.99034 0.92791 1.22224 0.95099 0.95688 0.89251 0.89697 1.22873 0.98832 0.98195 0.97958 1.22663 0.99109 0.97513 0.97324 1.22830 0.97272 0.93446 0.95099 1.61872 1.30734 1.05747 1.31385 1.19312 0.95754 0.80738 0.93528 0.93438 1.22393 0.99239 1.04914 0.96200 1.21059 1.30044 1.06717 0.95213 0.92135 1.24906 0.95290 0.96092 0.97989 1.69917 1.34747 1.12522 1.36344 0.86573 0.78827 0.76884 0.85521 1.20740 1.21564 1.20077 0.93421 0.92649 0.93402 0.93446 0.91455 0.89799 0.96427 0.92721 0.94984 0.91938 0.91261 0.90961 0.91703 0.91143 0.95078 0.82620 0.95191 0.90353 0.97455 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.84 6.01 -26.73 -0.16 -2.00 16 3 C 0.06 1.16 3.47 -3.82 -0.01 1.15 16 4 N -0.52 -10.73 3.49 -228.04 -0.80 -11.53 16 5 C 0.03 0.62 4.05 -3.83 -0.02 0.60 16 6 C 0.09 1.51 3.41 -66.73 -0.23 1.29 16 7 H 0.09 1.74 6.82 -51.93 -0.35 1.38 16 8 C -0.14 -1.92 6.47 -24.90 -0.16 -2.08 16 9 C -0.13 -1.61 7.08 -24.59 -0.17 -1.78 16 10 C 0.04 0.60 7.57 -2.30 -0.02 0.58 16 11 N -0.66 -11.54 7.30 -103.82 -0.76 -12.30 16 12 C 0.21 5.23 2.09 -68.86 -0.14 5.09 16 13 H 0.05 1.31 6.47 -51.93 -0.34 0.98 16 14 C -0.17 -4.02 8.34 37.16 0.31 -3.71 16 15 C -0.49 -13.37 7.76 -34.44 -0.27 -13.63 16 16 H 0.06 1.66 7.27 -52.49 -0.38 1.28 16 17 C 0.06 1.61 5.33 -17.82 -0.09 1.51 16 18 N -0.90 -25.77 11.73 55.43 0.65 -25.12 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.69 6.86 -51.93 -0.36 0.34 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.08 1.77 6.56 -51.93 -0.34 1.43 16 29 H 0.02 0.33 7.34 -51.93 -0.38 -0.05 16 30 H 0.05 0.89 6.48 -51.93 -0.34 0.55 16 31 H 0.03 0.60 6.38 -51.93 -0.33 0.27 16 32 H 0.06 0.80 7.77 -51.93 -0.40 0.40 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.35 6.39 7.60 -39.29 -0.30 6.09 16 39 H 0.03 0.69 6.69 -51.93 -0.35 0.34 16 40 H 0.08 2.08 6.51 -51.93 -0.34 1.74 16 41 H 0.01 0.15 6.59 -51.93 -0.34 -0.20 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 315.78 15.07 4.76 4.76 Total: -1.00 -27.72 315.78 -9.25 -36.97 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.49 Total: 5.17 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -0.60 Total: -14.59 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.90 Total: -48.94 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.72 -9.25 -36.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233048453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.179 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds