Wall clock time and date at job start Mon Mar 30 2020 04:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46999 * 2 1 4 4 N 1.46900 * 109.47093 * 176.77181 * 3 2 1 5 5 C 1.46901 * 111.00053 * 76.00529 * 4 3 2 6 6 C 1.52995 * 109.47238 * 195.93153 * 5 4 3 7 7 H 1.08999 * 109.87917 * 294.11341 * 6 5 4 8 8 C 1.54320 * 109.88921 * 172.91809 * 6 5 4 9 9 C 1.55145 * 103.01672 * 218.30481 * 8 6 5 10 10 C 1.54903 * 101.65020 * 35.65402 * 9 8 6 11 11 N 1.47439 * 109.89143 * 55.14515 * 6 5 4 12 12 C 1.46896 * 111.00308 * 199.96215 * 4 3 2 13 13 H 1.08995 * 109.47316 * 188.30893 * 12 4 3 14 14 C 1.53006 * 109.46811 * 308.30632 * 12 4 3 15 15 C 1.50697 * 109.47255 * 68.30311 * 12 4 3 16 16 H 1.08001 * 119.99917 * 354.58861 * 15 12 4 17 17 C 1.37881 * 120.00040 * 174.58922 * 15 12 4 18 18 N 1.31511 * 119.99753 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99946 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47101 * 90.00021 * 19 17 15 21 21 H 1.48505 * 109.46839 * 210.00241 * 19 17 15 22 22 H 1.48503 * 109.47000 * 329.99829 * 19 17 15 23 23 H 1.09000 * 109.46704 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46417 * 299.99207 * 1 2 3 25 25 H 1.08992 * 109.47293 * 59.99786 * 1 2 3 26 26 H 1.09003 * 109.46895 * 240.00675 * 2 1 3 27 27 H 1.08992 * 109.47293 * 120.00214 * 2 1 3 28 28 H 1.09002 * 109.46969 * 56.77489 * 3 2 1 29 29 H 1.09001 * 109.47463 * 296.77557 * 3 2 1 30 30 H 1.09004 * 109.46951 * 315.92568 * 5 4 3 31 31 H 1.09001 * 109.47288 * 75.92750 * 5 4 3 32 32 H 1.08996 * 110.70769 * 336.68950 * 8 6 5 33 33 H 1.09004 * 110.70631 * 99.92390 * 8 6 5 34 34 H 1.08995 * 110.99206 * 277.55994 * 9 8 6 35 35 H 1.09005 * 111.01757 * 153.75854 * 9 8 6 36 36 H 1.09000 * 110.36795 * 204.09455 * 10 9 8 37 37 H 1.09004 * 110.37255 * 81.75913 * 10 9 8 38 38 H 1.00898 * 110.99988 * 356.14740 * 11 6 5 39 39 H 1.08992 * 109.47504 * 59.99523 * 14 12 4 40 40 H 1.08998 * 109.47286 * 180.02562 * 14 12 4 41 41 H 1.09002 * 109.47112 * 299.99796 * 14 12 4 42 42 H 0.97003 * 120.00217 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5070 1.4433 0.0780 5 6 4.1032 1.0870 -1.2164 6 6 5.5724 0.7108 -1.0150 7 1 6.1369 1.5838 -0.6874 8 6 6.1604 0.1658 -2.3336 9 6 7.0858 -0.9838 -1.8547 10 6 6.2867 -1.5491 -0.6541 11 7 5.6822 -0.3631 -0.0108 12 6 4.0085 2.7411 0.5492 13 1 5.0943 2.7658 0.4580 14 6 3.4000 3.8608 -0.2975 15 6 3.6209 2.9354 1.9924 16 1 2.9849 2.2133 2.4827 17 6 4.0783 4.0352 2.6870 18 7 4.8524 4.9148 2.0898 19 14 3.5984 4.2758 4.4762 20 1 4.6015 3.6166 5.3506 21 1 3.5504 5.7276 4.7849 22 1 2.2619 3.6744 4.7154 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6302 1.9727 0.8597 29 1 1.7247 1.9394 -0.9175 30 1 3.5664 0.2394 -1.6427 31 1 4.0356 1.9380 -1.8942 32 1 5.3700 -0.2188 -2.9781 33 1 6.7365 0.9361 -2.8462 34 1 8.0531 -0.5980 -1.5331 35 1 7.2073 -1.7376 -2.6326 36 1 6.9549 -2.0583 0.0403 37 1 5.5095 -2.2295 -1.0022 38 1 4.7794 -0.5852 0.3813 39 1 2.3141 3.8361 -0.2065 40 1 3.7724 4.8238 0.0518 41 1 3.6803 3.7203 -1.3415 42 1 5.1745 5.6883 2.5785 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233048453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:29 Heat of formation + Delta-G solvation = -24.540036 kcal Electronic energy + Delta-G solvation = -18588.898488 eV Core-core repulsion = 15988.446189 eV Total energy + Delta-G solvation = -2600.452299 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.20285 -38.28427 -35.17003 -33.86864 -31.53149 -30.86471 -29.67377 -27.29087 -26.55703 -24.91202 -22.48800 -21.98906 -21.56006 -20.18182 -18.30372 -17.11608 -16.95346 -16.64397 -16.09678 -15.58724 -15.54368 -14.72045 -14.26164 -14.10608 -13.92709 -13.62333 -13.42587 -13.22350 -13.00032 -12.74325 -12.67344 -12.63020 -12.42569 -12.26696 -12.17816 -11.97044 -11.87122 -11.71995 -11.63137 -11.44579 -11.09360 -10.83406 -10.42664 -9.11952 -8.76503 -8.07161 -6.14551 1.42272 1.43891 1.52954 2.45629 3.18894 3.26154 3.69851 3.87364 3.92677 4.02637 4.19606 4.32480 4.37308 4.49888 4.60974 4.62918 4.67877 4.70618 4.75709 4.81236 4.90866 4.95694 5.00271 5.01139 5.09215 5.11312 5.19668 5.24423 5.28992 5.39862 5.46189 5.51072 5.58712 5.73432 5.79659 6.22732 6.32279 6.59584 6.73728 6.81963 6.99141 7.53281 9.00739 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.008229 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.245874 B = 3401.629655 C = 4163.004453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C 0.064 3.936 4 N -0.529 5.529 5 C 0.041 3.959 6 C 0.088 3.912 7 H 0.040 0.960 8 C -0.133 4.133 9 C -0.121 4.121 10 C 0.042 3.958 11 N -0.688 5.688 12 C 0.222 3.778 13 H 0.010 0.990 14 C -0.154 4.154 15 C -0.502 4.502 16 H 0.054 0.946 17 C 0.009 3.991 18 N -0.924 5.924 19 Si 0.954 3.046 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.268 1.268 23 H 0.069 0.931 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.019 0.981 30 H 0.080 0.920 31 H 0.023 0.977 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.348 0.652 39 H 0.033 0.967 40 H 0.048 0.952 41 H 0.023 0.977 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 -11.745 -8.804 14.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.064 4.064 4 N -0.252 5.252 5 C -0.088 4.088 6 C -0.022 4.022 7 H 0.058 0.942 8 C -0.172 4.172 9 C -0.159 4.159 10 C -0.087 4.087 11 N -0.321 5.321 12 C 0.115 3.885 13 H 0.028 0.972 14 C -0.213 4.213 15 C -0.541 4.541 16 H 0.072 0.928 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.780 3.220 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.192 1.192 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.167 0.833 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.647 -11.705 -8.108 14.333 hybrid contribution -0.930 1.188 -0.006 1.509 sum -2.577 -10.516 -8.114 13.530 Atomic orbital electron populations 1.21694 0.94725 1.02201 1.01589 1.21461 0.96028 0.95469 1.01737 1.22012 0.88136 0.97129 0.99135 1.62159 1.05884 1.31988 1.25151 1.22615 0.95601 0.99426 0.91155 1.22076 0.94310 0.94624 0.91225 0.94170 1.22829 0.99513 0.98723 0.96101 1.22666 0.98153 0.97583 0.97512 1.22926 0.97776 0.92435 0.95573 1.61782 1.30508 1.07315 1.32463 1.18964 0.93632 0.83025 0.92881 0.97179 1.22193 0.99143 1.03088 0.96914 1.21340 1.29644 1.06468 0.96645 0.92784 1.25656 0.95392 0.95983 1.01878 1.70047 1.35736 1.12927 1.37747 0.85617 0.78694 0.76841 0.80811 1.20635 1.21161 1.19244 0.91171 0.93395 0.92654 0.91949 0.92305 0.92618 0.96227 0.90187 0.95847 0.90085 0.90865 0.91662 0.88619 0.90778 0.93284 0.83332 0.94792 0.93292 0.95843 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.91 71.98 0.71 -2.75 16 2 C -0.11 -3.15 6.01 30.60 0.18 -2.97 16 3 C 0.06 2.37 3.47 86.30 0.30 2.67 16 4 N -0.53 -21.77 3.49 -875.38 -3.05 -24.82 16 5 C 0.04 1.44 4.05 86.30 0.35 1.79 16 6 C 0.09 3.04 3.41 45.26 0.15 3.20 16 7 H 0.04 1.74 6.82 -2.39 -0.02 1.72 16 8 C -0.13 -3.39 6.47 31.78 0.21 -3.18 16 9 C -0.12 -2.73 7.08 31.98 0.23 -2.51 16 10 C 0.04 1.07 7.57 86.77 0.66 1.72 16 11 N -0.69 -23.62 7.30 -482.38 -3.52 -27.14 16 12 C 0.22 11.30 2.09 44.17 0.09 11.39 16 13 H 0.01 0.60 6.47 -2.39 -0.02 0.58 16 14 C -0.15 -7.55 8.34 71.98 0.60 -6.95 16 15 C -0.50 -28.03 7.76 25.60 0.20 -27.83 16 16 H 0.05 3.02 7.27 -2.91 -0.02 3.00 16 17 C 0.01 0.50 5.33 84.66 0.45 0.95 16 18 N -0.92 -54.76 11.73 21.45 0.25 -54.51 16 19 Si 0.95 45.07 29.54 68.60 2.03 47.10 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.63 6.86 -2.39 -0.02 1.61 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.06 2.37 6.56 -2.39 -0.02 2.36 16 29 H 0.02 0.71 7.34 -2.39 -0.02 0.69 16 30 H 0.08 2.39 6.48 -2.39 -0.02 2.38 16 31 H 0.02 0.86 6.38 -2.39 -0.02 0.84 16 32 H 0.08 1.79 7.77 -2.39 -0.02 1.77 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.35 12.38 7.60 -89.70 -0.68 11.70 16 39 H 0.03 1.58 6.69 -2.39 -0.02 1.57 16 40 H 0.05 2.68 6.51 -2.39 -0.02 2.66 16 41 H 0.02 1.03 6.59 -2.39 -0.02 1.01 16 42 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -61.28 315.78 0.13 -61.15 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.29 Total: 22.68 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 4.13 Total: -24.47 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -6.32 Total: -106.47 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -61.28 0.13 -61.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233048453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.612 kcal (2) G-P(sol) polarization free energy of solvation -61.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds