Wall clock time and date at job start Mon Mar 30 2020 04:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52989 * 109.47262 * 2 1 4 4 N 1.46903 * 109.47451 * 179.48128 * 3 2 1 5 5 C 1.46902 * 110.99887 * 297.72041 * 4 3 2 6 6 C 1.50699 * 109.47045 * 292.85408 * 5 4 3 7 7 H 1.07997 * 120.00052 * 354.97069 * 6 5 4 8 8 C 1.37870 * 120.00135 * 174.97157 * 6 5 4 9 9 N 1.31519 * 120.00149 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00263 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46645 * 60.00203 * 10 8 6 12 12 H 1.48501 * 109.46938 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46958 * 300.00214 * 10 8 6 14 14 C 1.46897 * 110.99492 * 61.67055 * 4 3 2 15 15 C 1.52998 * 109.47382 * 66.05181 * 14 4 3 16 16 H 1.09003 * 109.46057 * 294.97580 * 15 14 4 17 17 C 1.53041 * 109.46378 * 175.00037 * 15 14 4 18 18 C 1.53115 * 109.30968 * 180.79482 * 17 15 14 19 19 C 1.53198 * 109.11947 * 57.63137 * 18 17 15 20 20 C 1.53033 * 109.30157 * 302.37191 * 19 18 17 21 21 N 1.46839 * 109.45698 * 54.94807 * 15 14 4 22 22 H 1.09001 * 109.46915 * 60.00013 * 1 2 3 23 23 H 1.08998 * 109.47681 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47091 * 300.00101 * 1 2 3 25 25 H 1.09002 * 109.47091 * 239.99899 * 2 1 3 26 26 H 1.09001 * 109.46915 * 119.99987 * 2 1 3 27 27 H 1.09004 * 109.47374 * 59.48774 * 3 2 1 28 28 H 1.09004 * 109.47391 * 299.48114 * 3 2 1 29 29 H 1.09001 * 109.46986 * 52.85810 * 5 4 3 30 30 H 1.09000 * 109.46994 * 172.85330 * 5 4 3 31 31 H 0.97001 * 120.00445 * 180.02562 * 9 8 6 32 32 H 1.09004 * 109.47736 * 306.04400 * 14 4 3 33 33 H 1.09001 * 109.47287 * 186.05169 * 14 4 3 34 34 H 1.08998 * 109.50024 * 300.75151 * 17 15 14 35 35 H 1.08999 * 109.50616 * 60.83124 * 17 15 14 36 36 H 1.09005 * 109.52413 * 177.58060 * 18 17 15 37 37 H 1.09011 * 109.52418 * 297.76716 * 18 17 15 38 38 H 1.09002 * 109.49532 * 182.42225 * 19 18 17 39 39 H 1.09001 * 109.52392 * 62.34047 * 19 18 17 40 40 H 1.09000 * 109.46360 * 299.15857 * 20 19 18 41 41 H 1.08998 * 109.46400 * 179.19503 * 20 19 18 42 42 H 1.00905 * 111.00091 * 57.65780 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0125 5 6 4.0250 0.8082 1.2330 6 6 3.6796 1.6607 2.4267 7 1 3.2038 2.6199 2.2857 8 6 3.9710 1.2161 3.6988 9 7 4.5509 0.0482 3.8705 10 14 3.5435 2.2731 5.1785 11 1 2.0782 2.5124 5.2089 12 1 3.9575 1.5746 6.4219 13 1 4.2555 3.5726 5.0807 14 6 4.0456 0.7880 -1.1882 15 6 3.6922 1.6192 -2.4231 16 1 2.6106 1.6269 -2.5583 17 6 4.3559 1.0053 -3.6579 18 6 4.0163 1.8509 -4.8884 19 6 4.4834 3.2907 -4.6523 20 6 3.8160 3.8383 -3.3887 21 7 4.1723 2.9948 -2.2407 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6692 1.9589 0.8854 28 1 1.6843 1.9536 -0.8946 29 1 3.5750 -0.1779 1.3481 30 1 5.1078 0.7070 1.1598 31 1 4.7556 -0.2648 4.7655 32 1 3.6121 -0.2075 -1.2839 33 1 5.1292 0.7057 -1.1036 34 1 5.4366 0.9846 -3.5177 35 1 3.9881 -0.0106 -3.8017 36 1 4.5223 1.4415 -5.7628 37 1 2.9385 1.8400 -5.0517 38 1 4.2062 3.9079 -5.5069 39 1 5.5662 3.3066 -4.5280 40 1 2.7338 3.8357 -3.5193 41 1 4.1575 4.8578 -3.2102 42 1 5.1674 3.0115 -2.0747 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233054566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:19 Heat of formation + Delta-G solvation = -14.815604 kcal Electronic energy + Delta-G solvation = -18312.434258 eV Core-core repulsion = 15712.403642 eV Total energy + Delta-G solvation = -2600.030616 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.01826 -36.87649 -32.71406 -32.41741 -31.43735 -30.78877 -27.14099 -25.92548 -24.11993 -23.08327 -21.94460 -21.31475 -20.18776 -18.90046 -16.13053 -15.44313 -15.22175 -14.96531 -14.50258 -14.47042 -14.06691 -13.91871 -13.46330 -13.02697 -12.69528 -12.31754 -12.03383 -11.88701 -11.56218 -11.27293 -11.19115 -11.04179 -10.90182 -10.86340 -10.69848 -10.55855 -10.49584 -10.37763 -10.17136 -9.81152 -9.48225 -9.07283 -8.32669 -7.86123 -6.88850 -5.92583 -3.92393 3.39911 3.43305 3.47143 4.48084 4.53825 4.75916 4.87083 5.03733 5.12881 5.37953 5.42604 5.47013 5.50906 5.59905 5.63270 5.66651 5.78826 5.90889 5.97444 5.98525 6.00143 6.05730 6.13831 6.17031 6.25013 6.28848 6.45268 6.48694 6.56873 6.61186 6.86227 7.09144 7.42018 7.49662 7.56026 7.80713 7.95142 8.26113 8.39799 8.73169 9.16833 9.71286 11.18022 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026260 B = 0.006136 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.020685 B = 4562.439402 C = 4983.632188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.166 4.166 3 C 0.072 3.928 4 N -0.514 5.514 5 C 0.188 3.812 6 C -0.497 4.497 7 H 0.062 0.938 8 C 0.053 3.947 9 N -0.903 5.903 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.058 3.942 15 C 0.096 3.904 16 H 0.075 0.925 17 C -0.154 4.154 18 C -0.116 4.116 19 C -0.159 4.159 20 C 0.058 3.942 21 N -0.654 5.654 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.052 0.948 29 H -0.001 1.001 30 H 0.021 0.979 31 H 0.259 0.741 32 H 0.029 0.971 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 2.359 -15.365 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.205 4.205 3 C -0.056 4.056 4 N -0.236 5.236 5 C 0.063 3.937 6 C -0.536 4.536 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.543 5.543 10 Si 0.723 3.277 11 H -0.204 1.204 12 H -0.216 1.216 13 H -0.202 1.202 14 C -0.071 4.071 15 C -0.015 4.015 16 H 0.093 0.907 17 C -0.194 4.194 18 C -0.154 4.154 19 C -0.199 4.199 20 C -0.073 4.073 21 N -0.282 5.282 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.016 0.984 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.060 2.944 -14.809 15.405 hybrid contribution 0.238 -0.828 0.118 0.869 sum -2.821 2.117 -14.691 15.108 Atomic orbital electron populations 1.21645 0.96688 1.00477 1.01145 1.22212 0.95398 1.01034 1.01867 1.21981 0.88815 0.93640 1.01191 1.62218 1.05900 1.53932 1.01572 1.19777 0.94851 0.93280 0.85820 1.21137 1.38478 1.03966 0.90012 0.91946 1.24970 0.95636 0.95132 0.98957 1.69954 1.42972 1.19203 1.22160 0.86611 0.78737 0.80492 0.81854 1.20381 1.21553 1.20248 1.22094 0.99588 0.94378 0.91075 1.21584 0.99195 0.88204 0.92492 0.90704 1.22308 1.01162 0.99612 0.96362 1.21535 1.00938 0.95330 0.97603 1.22326 1.00747 0.96734 1.00073 1.22020 1.00143 0.97050 0.88052 1.60447 1.20558 1.09446 1.37790 0.93650 0.93817 0.92746 0.93301 0.90776 0.90533 0.92942 0.98355 0.96135 0.93100 0.95323 0.92021 0.92069 0.91837 0.92556 0.92180 0.92141 0.92246 0.91503 0.91142 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.17 -3.03 5.28 -26.74 -0.14 -3.17 16 3 C 0.07 1.43 4.95 -3.83 -0.02 1.41 16 4 N -0.51 -10.99 4.42 -236.07 -1.04 -12.03 16 5 C 0.19 4.88 4.53 -4.98 -0.02 4.86 16 6 C -0.50 -14.07 8.39 -34.44 -0.29 -14.36 16 7 H 0.06 1.78 7.38 -52.49 -0.39 1.39 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 10 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.06 1.03 4.39 -3.83 -0.02 1.01 16 15 C 0.10 1.40 2.20 -67.73 -0.15 1.25 16 16 H 0.07 1.15 6.76 -51.93 -0.35 0.80 16 17 C -0.15 -1.87 5.36 -26.65 -0.14 -2.01 16 18 C -0.12 -1.23 6.01 -26.57 -0.16 -1.39 16 19 C -0.16 -1.64 6.08 -26.61 -0.16 -1.80 16 20 C 0.06 0.69 6.55 -3.84 -0.03 0.66 16 21 N -0.65 -9.66 6.22 -106.77 -0.66 -10.32 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.84 6.34 -51.93 -0.33 0.51 16 26 H 0.07 1.60 6.28 -51.93 -0.33 1.27 16 27 H 0.08 1.68 6.98 -51.93 -0.36 1.32 16 28 H 0.05 0.95 6.50 -51.93 -0.34 0.61 16 29 H 0.00 -0.03 6.02 -51.93 -0.31 -0.35 16 30 H 0.02 0.58 7.91 -51.93 -0.41 0.17 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.03 0.51 6.06 -51.93 -0.31 0.20 16 33 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.34 5.01 8.79 -39.29 -0.35 4.66 16 LS Contribution 318.71 15.07 4.80 4.80 Total: -1.00 -29.18 318.71 -9.72 -38.89 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.67 Total: 1.90 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -0.86 Total: -13.91 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.97 Total: -48.69 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.18 -9.72 -38.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233054566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.079 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds