Wall clock time and date at job start Mon Mar 30 2020 04:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52989 * 109.47262 * 2 1 4 4 N 1.46903 * 109.47451 * 179.48128 * 3 2 1 5 5 C 1.46902 * 110.99887 * 297.72041 * 4 3 2 6 6 C 1.50699 * 109.47045 * 292.85408 * 5 4 3 7 7 H 1.07997 * 120.00052 * 354.97069 * 6 5 4 8 8 C 1.37870 * 120.00135 * 174.97157 * 6 5 4 9 9 N 1.31519 * 120.00149 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00263 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46645 * 60.00203 * 10 8 6 12 12 H 1.48501 * 109.46938 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46958 * 300.00214 * 10 8 6 14 14 C 1.46897 * 110.99492 * 61.67055 * 4 3 2 15 15 C 1.52998 * 109.47382 * 66.05181 * 14 4 3 16 16 H 1.09003 * 109.46057 * 294.97580 * 15 14 4 17 17 C 1.53041 * 109.46378 * 175.00037 * 15 14 4 18 18 C 1.53115 * 109.30968 * 180.79482 * 17 15 14 19 19 C 1.53198 * 109.11947 * 57.63137 * 18 17 15 20 20 C 1.53033 * 109.30157 * 302.37191 * 19 18 17 21 21 N 1.46839 * 109.45698 * 54.94807 * 15 14 4 22 22 H 1.09001 * 109.46915 * 60.00013 * 1 2 3 23 23 H 1.08998 * 109.47681 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47091 * 300.00101 * 1 2 3 25 25 H 1.09002 * 109.47091 * 239.99899 * 2 1 3 26 26 H 1.09001 * 109.46915 * 119.99987 * 2 1 3 27 27 H 1.09004 * 109.47374 * 59.48774 * 3 2 1 28 28 H 1.09004 * 109.47391 * 299.48114 * 3 2 1 29 29 H 1.09001 * 109.46986 * 52.85810 * 5 4 3 30 30 H 1.09000 * 109.46994 * 172.85330 * 5 4 3 31 31 H 0.97001 * 120.00445 * 180.02562 * 9 8 6 32 32 H 1.09004 * 109.47736 * 306.04400 * 14 4 3 33 33 H 1.09001 * 109.47287 * 186.05169 * 14 4 3 34 34 H 1.08998 * 109.50024 * 300.75151 * 17 15 14 35 35 H 1.08999 * 109.50616 * 60.83124 * 17 15 14 36 36 H 1.09005 * 109.52413 * 177.58060 * 18 17 15 37 37 H 1.09011 * 109.52418 * 297.76716 * 18 17 15 38 38 H 1.09002 * 109.49532 * 182.42225 * 19 18 17 39 39 H 1.09001 * 109.52392 * 62.34047 * 19 18 17 40 40 H 1.09000 * 109.46360 * 299.15857 * 20 19 18 41 41 H 1.08998 * 109.46400 * 179.19503 * 20 19 18 42 42 H 1.00905 * 111.00091 * 57.65780 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0125 5 6 4.0250 0.8082 1.2330 6 6 3.6796 1.6607 2.4267 7 1 3.2038 2.6199 2.2857 8 6 3.9710 1.2161 3.6988 9 7 4.5509 0.0482 3.8705 10 14 3.5435 2.2731 5.1785 11 1 2.0782 2.5124 5.2089 12 1 3.9575 1.5746 6.4219 13 1 4.2555 3.5726 5.0807 14 6 4.0456 0.7880 -1.1882 15 6 3.6922 1.6192 -2.4231 16 1 2.6106 1.6269 -2.5583 17 6 4.3559 1.0053 -3.6579 18 6 4.0163 1.8509 -4.8884 19 6 4.4834 3.2907 -4.6523 20 6 3.8160 3.8383 -3.3887 21 7 4.1723 2.9948 -2.2407 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6692 1.9589 0.8854 28 1 1.6843 1.9536 -0.8946 29 1 3.5750 -0.1779 1.3481 30 1 5.1078 0.7070 1.1598 31 1 4.7556 -0.2648 4.7655 32 1 3.6121 -0.2075 -1.2839 33 1 5.1292 0.7057 -1.1036 34 1 5.4366 0.9846 -3.5177 35 1 3.9881 -0.0106 -3.8017 36 1 4.5223 1.4415 -5.7628 37 1 2.9385 1.8400 -5.0517 38 1 4.2062 3.9079 -5.5069 39 1 5.5662 3.3066 -4.5280 40 1 2.7338 3.8357 -3.5193 41 1 4.1575 4.8578 -3.2102 42 1 5.1674 3.0115 -2.0747 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233054566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:19 Heat of formation + Delta-G solvation = -34.160649 kcal Electronic energy + Delta-G solvation = -18313.273122 eV Core-core repulsion = 15712.403642 eV Total energy + Delta-G solvation = -2600.869480 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.23024 -38.37322 -34.81838 -33.75415 -32.47247 -32.18198 -29.03860 -27.35568 -25.78901 -24.21369 -23.52287 -22.64424 -21.19213 -20.50049 -18.30809 -16.93877 -16.56174 -16.37378 -16.18503 -15.60972 -15.32215 -15.04212 -15.02293 -14.49779 -14.16273 -13.78395 -13.32885 -13.15056 -13.12784 -12.70555 -12.64277 -12.52095 -12.48645 -12.26651 -12.22553 -12.08514 -11.90218 -11.74842 -11.50767 -11.33419 -11.19040 -11.00386 -10.54197 -8.94150 -8.66264 -8.13570 -6.22532 1.41666 1.44914 1.52586 2.43900 3.18001 3.31349 3.56463 3.90215 4.00828 4.10424 4.14366 4.19576 4.27943 4.41517 4.49562 4.55167 4.60033 4.67760 4.80655 4.82201 4.90349 4.94684 4.99997 5.09803 5.11589 5.15822 5.18165 5.21720 5.22323 5.25898 5.37201 5.44793 5.49685 5.58380 5.74179 6.16405 6.38695 6.51728 6.66696 6.85309 6.96043 7.46716 8.96134 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026260 B = 0.006136 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.020685 B = 4562.439402 C = 4983.632188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.158 4.158 3 C 0.078 3.922 4 N -0.520 5.520 5 C 0.205 3.795 6 C -0.512 4.512 7 H 0.057 0.943 8 C 0.002 3.998 9 N -0.937 5.937 10 Si 0.963 3.037 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.270 1.270 14 C 0.059 3.941 15 C 0.108 3.892 16 H 0.073 0.927 17 C -0.149 4.149 18 C -0.113 4.113 19 C -0.153 4.153 20 C 0.059 3.941 21 N -0.676 5.676 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.033 0.967 27 H 0.049 0.951 28 H 0.076 0.924 29 H -0.025 1.025 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.029 0.971 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.768 3.306 -16.876 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.197 4.197 3 C -0.050 4.050 4 N -0.242 5.242 5 C 0.078 3.922 6 C -0.550 4.550 7 H 0.075 0.925 8 C -0.196 4.196 9 N -0.578 5.578 10 Si 0.788 3.212 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.195 1.195 14 C -0.070 4.070 15 C -0.003 4.003 16 H 0.091 0.909 17 C -0.189 4.189 18 C -0.150 4.150 19 C -0.192 4.192 20 C -0.071 4.071 21 N -0.305 5.305 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.094 0.906 29 H -0.008 1.008 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.081 3.901 -16.348 17.296 hybrid contribution 0.570 -1.128 0.543 1.375 sum -3.511 2.773 -15.805 16.426 Atomic orbital electron populations 1.21599 0.94009 1.01765 1.01967 1.22082 0.97732 0.99453 1.00408 1.21925 0.87637 0.94571 1.00892 1.62120 1.07155 1.53845 1.01104 1.19403 0.92832 0.92193 0.87732 1.21404 1.38433 1.03971 0.91223 0.92468 1.25840 0.95339 0.96365 1.02033 1.70083 1.43900 1.20863 1.22937 0.85527 0.78870 0.78752 0.78012 1.19391 1.20930 1.19526 1.22167 0.98764 0.95017 0.91016 1.21393 0.99175 0.88032 0.91672 0.90890 1.22229 1.00723 1.00074 0.95853 1.21526 1.01404 0.95059 0.97046 1.22247 1.00492 0.96781 0.99664 1.22044 1.00249 0.96838 0.87953 1.60427 1.20457 1.09748 1.39878 0.91235 0.92347 0.93480 0.92056 0.94854 0.93218 0.90613 1.00779 0.99117 0.92943 0.95288 0.93105 0.92311 0.91323 0.91056 0.91762 0.90342 0.92300 0.91554 0.90640 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.91 71.98 0.71 -3.24 16 2 C -0.16 -5.77 5.28 30.59 0.16 -5.60 16 3 C 0.08 3.09 4.95 86.30 0.43 3.52 16 4 N -0.52 -22.77 4.42 -900.79 -3.98 -26.75 16 5 C 0.20 11.15 4.53 85.56 0.39 11.54 16 6 C -0.51 -29.83 8.39 25.60 0.21 -29.62 16 7 H 0.06 3.33 7.38 -2.91 -0.02 3.30 16 8 C 0.00 0.09 5.46 84.65 0.46 0.55 16 9 N -0.94 -57.63 13.29 21.45 0.28 -57.34 16 10 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 14 C 0.06 2.12 4.39 86.30 0.38 2.50 16 15 C 0.11 3.03 2.20 44.94 0.10 3.12 16 16 H 0.07 2.09 6.76 -2.39 -0.02 2.07 16 17 C -0.15 -3.32 5.36 30.65 0.16 -3.16 16 18 C -0.11 -2.04 6.01 30.70 0.18 -1.86 16 19 C -0.15 -2.71 6.08 30.67 0.19 -2.53 16 20 C 0.06 1.29 6.55 86.32 0.57 1.85 16 21 N -0.68 -19.31 6.22 -491.71 -3.06 -22.37 16 22 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.06 2.07 6.34 -2.39 -0.02 2.05 16 26 H 0.03 1.48 6.28 -2.39 -0.01 1.47 16 27 H 0.05 2.22 6.98 -2.38 -0.02 2.21 16 28 H 0.08 2.65 6.50 -2.38 -0.02 2.63 16 29 H -0.03 -1.49 6.02 -2.39 -0.01 -1.50 16 30 H -0.01 -0.55 7.91 -2.39 -0.02 -0.57 16 31 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.03 1.04 6.06 -2.38 -0.01 1.03 16 33 H 0.05 1.91 7.92 -2.39 -0.02 1.89 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.34 9.80 8.79 -89.69 -0.79 9.01 16 Total: -1.00 -63.98 318.71 -0.60 -64.58 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.18 Total: 17.17 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 3.95 Total: -22.92 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -6.76 Total: -106.47 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -63.98 -0.60 -64.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233054566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.420 kcal (2) G-P(sol) polarization free energy of solvation -63.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds