Wall clock time and date at job start Mon Mar 30 2020 04:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47303 * 2 1 4 4 N 1.46897 * 109.47106 * 181.34754 * 3 2 1 5 5 C 1.46894 * 111.00285 * 62.56447 * 4 3 2 6 6 C 1.50707 * 109.46983 * 66.04464 * 5 4 3 7 7 H 1.08005 * 119.99673 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99799 * 179.72662 * 6 5 4 9 9 N 1.31516 * 120.00507 * 0.27401 * 8 6 5 10 10 Si 1.86804 * 119.99722 * 180.27438 * 8 6 5 11 11 H 1.48501 * 109.47213 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47139 * 120.00025 * 10 8 6 13 13 H 1.48499 * 109.47419 * 239.99748 * 10 8 6 14 14 C 1.46901 * 110.99912 * 298.61175 * 4 3 2 15 15 C 1.53003 * 109.47282 * 288.29165 * 14 4 3 16 16 H 1.09001 * 109.49956 * 56.95332 * 15 14 4 17 17 C 1.53116 * 109.50387 * 177.02829 * 15 14 4 18 18 C 1.53123 * 109.16001 * 177.59918 * 17 15 14 19 19 C 1.53044 * 109.27779 * 302.34852 * 18 17 15 20 20 N 1.46846 * 109.52306 * 59.17658 * 19 18 17 21 21 C 1.46843 * 111.19936 * 298.26050 * 20 19 18 22 22 H 1.08998 * 109.46924 * 59.99906 * 1 2 3 23 23 H 1.09001 * 109.47173 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47138 * 299.99957 * 1 2 3 25 25 H 1.08997 * 109.47404 * 239.99790 * 2 1 3 26 26 H 1.09007 * 109.46894 * 119.99805 * 2 1 3 27 27 H 1.09001 * 109.46728 * 61.34744 * 3 2 1 28 28 H 1.08993 * 109.47222 * 301.34865 * 3 2 1 29 29 H 1.08995 * 109.46962 * 306.04903 * 5 4 3 30 30 H 1.08998 * 109.47426 * 186.04157 * 5 4 3 31 31 H 0.96996 * 120.00123 * 179.97438 * 9 8 6 32 32 H 1.08996 * 109.47642 * 48.29329 * 14 4 3 33 33 H 1.09005 * 109.46928 * 168.29741 * 14 4 3 34 34 H 1.08999 * 109.52719 * 297.50150 * 17 15 14 35 35 H 1.09000 * 109.52363 * 57.70085 * 17 15 14 36 36 H 1.08999 * 109.50460 * 62.28375 * 18 17 15 37 37 H 1.08997 * 109.50104 * 182.36640 * 18 17 15 38 38 H 1.08998 * 109.45775 * 179.19751 * 19 18 17 39 39 H 1.09004 * 109.45899 * 299.16252 * 19 18 17 40 40 H 1.00900 * 110.99578 * 174.15759 * 20 19 18 41 41 H 1.08997 * 109.46008 * 301.72359 * 21 20 19 42 42 H 1.08997 * 109.46140 * 181.76110 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5087 1.4426 -0.0326 5 6 4.0080 0.8203 -1.2660 6 6 3.6230 1.6708 -2.4491 7 1 3.0638 2.5826 -2.2995 8 6 3.9901 1.2880 -3.7217 9 7 4.6715 0.1779 -3.9038 10 14 3.5196 2.3461 -5.1875 11 1 2.7615 3.5335 -4.7179 12 1 4.7490 2.7912 -5.8917 13 1 2.6750 1.5552 -6.1183 14 6 4.0616 0.7764 1.1543 15 6 3.8488 1.6635 2.3826 16 1 2.7865 1.8801 2.4953 17 6 4.3579 0.9383 3.6313 18 6 4.1965 1.8560 4.8464 19 6 4.9599 3.1594 4.6001 20 7 4.4353 3.8153 3.3956 21 6 4.6222 2.9724 2.2078 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6966 1.9493 0.9019 28 1 1.6572 1.9633 -0.8776 29 1 3.5711 -0.1724 -1.3747 30 1 5.0936 0.7362 -1.2169 31 1 4.9294 -0.0915 -4.7992 32 1 3.5568 -0.1780 1.3036 33 1 5.1284 0.6047 1.0106 34 1 3.7803 0.0267 3.7841 35 1 5.4106 0.6864 3.5025 36 1 3.1399 2.0764 4.9982 37 1 4.5959 1.3612 5.7316 38 1 4.8352 3.8207 5.4575 39 1 6.0186 2.9396 4.4621 40 1 4.8571 4.7226 3.2653 41 1 5.6825 2.7536 2.0810 42 1 4.2523 3.4981 1.3276 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233054653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:38 Heat of formation + Delta-G solvation = -17.126617 kcal Electronic energy + Delta-G solvation = -18251.711256 eV Core-core repulsion = 15651.580427 eV Total energy + Delta-G solvation = -2600.130829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.86513 -36.94536 -32.80684 -32.70360 -31.65941 -30.58892 -27.05389 -25.83083 -23.92996 -23.51089 -22.00830 -21.49197 -19.50775 -18.82031 -16.35604 -16.06738 -15.27152 -14.80255 -14.51173 -14.37917 -13.95309 -13.61465 -13.59738 -13.12419 -12.76028 -12.51137 -12.31603 -11.90242 -11.63235 -11.29796 -11.10119 -10.95710 -10.85694 -10.75771 -10.71823 -10.53826 -10.28786 -10.19793 -10.02495 -9.80488 -9.52685 -9.08805 -8.39859 -8.27735 -7.06372 -5.99383 -3.99717 3.32443 3.40081 3.45005 4.38274 4.45234 4.84502 5.03073 5.05364 5.29714 5.34511 5.37586 5.56317 5.59601 5.62033 5.64885 5.78154 5.85049 5.91904 6.01392 6.04868 6.10177 6.17443 6.20184 6.24305 6.29099 6.45533 6.47341 6.56353 6.68145 6.73423 6.81453 7.01669 7.23913 7.38580 7.48112 7.54596 7.85795 8.15819 8.29002 8.62349 9.08635 9.64282 11.11500 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024959 B = 0.006175 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.580026 B = 4533.032184 C = 5070.382079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.066 3.934 4 N -0.533 5.533 5 C 0.189 3.811 6 C -0.501 4.501 7 H 0.063 0.937 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.054 3.946 15 C -0.075 4.075 16 H 0.074 0.926 17 C -0.118 4.118 18 C -0.115 4.115 19 C 0.058 3.942 20 N -0.694 5.694 21 C 0.072 3.928 22 H 0.054 0.946 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.079 0.921 29 H -0.003 1.003 30 H 0.025 0.975 31 H 0.259 0.741 32 H 0.031 0.969 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.338 0.662 41 H 0.023 0.977 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 2.272 14.471 14.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.062 4.062 4 N -0.255 5.255 5 C 0.064 3.936 6 C -0.539 4.539 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.075 4.075 15 C -0.095 4.095 16 H 0.093 0.907 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.072 4.072 20 N -0.325 5.325 21 C -0.057 4.057 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.015 0.985 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.156 0.844 41 H 0.041 0.959 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.450 2.455 14.428 14.839 hybrid contribution 0.593 -0.388 -1.070 1.283 sum -1.857 2.068 13.358 13.644 Atomic orbital electron populations 1.21650 0.96561 1.00578 1.01223 1.22169 0.95491 1.00641 1.01966 1.22051 0.88697 0.94254 1.01216 1.62298 1.06219 1.54425 1.02565 1.19774 0.95250 0.93313 0.85279 1.21203 1.34421 1.07942 0.90384 0.91909 1.24973 0.95426 0.95267 0.98986 1.69968 1.39164 1.22944 1.21949 0.86497 0.78156 0.80495 0.82606 1.19668 1.21125 1.21199 1.22125 0.99595 0.94818 0.90979 1.21136 1.00495 0.94480 0.93361 0.90734 1.21628 1.00947 0.98085 0.94916 1.21552 1.01091 0.95134 0.97489 1.21887 0.95988 0.95999 0.93328 1.60312 1.62714 1.05963 1.03473 1.21885 0.97417 0.94093 0.92270 0.92737 0.93740 0.93516 0.90796 0.93070 0.92858 0.90307 0.98508 0.95671 0.93103 0.95136 0.92000 0.92215 0.92497 0.91414 0.92186 0.91522 0.95696 0.84436 0.95853 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.16 -2.94 5.30 -26.73 -0.14 -3.08 16 3 C 0.07 1.28 5.01 -3.83 -0.02 1.26 16 4 N -0.53 -11.17 4.05 -236.08 -0.96 -12.13 16 5 C 0.19 4.84 4.52 -4.98 -0.02 4.82 16 6 C -0.50 -13.92 8.48 -34.44 -0.29 -14.21 16 7 H 0.06 1.74 7.12 -52.48 -0.37 1.37 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 10 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 14 C 0.05 0.97 4.23 -3.82 -0.02 0.95 16 15 C -0.08 -1.15 2.34 -90.54 -0.21 -1.36 16 16 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 17 C -0.12 -1.51 5.29 -26.61 -0.14 -1.66 16 18 C -0.11 -1.30 6.09 -26.64 -0.16 -1.46 16 19 C 0.06 0.66 6.55 -3.83 -0.03 0.63 16 20 N -0.69 -9.08 6.84 -113.82 -0.78 -9.85 16 21 C 0.07 1.10 5.69 -3.84 -0.02 1.08 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.56 6.27 -51.93 -0.33 1.23 16 26 H 0.05 0.87 6.27 -51.93 -0.33 0.55 16 27 H 0.05 0.94 6.59 -51.93 -0.34 0.59 16 28 H 0.08 1.67 6.79 -51.93 -0.35 1.32 16 29 H 0.00 -0.08 6.05 -51.93 -0.31 -0.39 16 30 H 0.03 0.70 7.86 -51.93 -0.41 0.29 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.03 0.54 5.84 -51.93 -0.30 0.24 16 33 H 0.06 1.15 7.82 -51.93 -0.41 0.75 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.34 3.88 8.90 -39.29 -0.35 3.53 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 1.61 7.72 -51.93 -0.40 1.21 16 LS Contribution 317.49 15.07 4.78 4.78 Total: -1.00 -28.80 317.49 -9.63 -38.42 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.61 Total: 1.49 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.78 Total: -13.38 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -1.00 Total: -47.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.80 -9.63 -38.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233054653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.297 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds