Wall clock time and date at job start Mon Mar 30 2020 04:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47303 * 2 1 4 4 N 1.46897 * 109.47106 * 181.34754 * 3 2 1 5 5 C 1.46894 * 111.00285 * 62.56447 * 4 3 2 6 6 C 1.50707 * 109.46983 * 66.04464 * 5 4 3 7 7 H 1.08005 * 119.99673 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99799 * 179.72662 * 6 5 4 9 9 N 1.31516 * 120.00507 * 0.27401 * 8 6 5 10 10 Si 1.86804 * 119.99722 * 180.27438 * 8 6 5 11 11 H 1.48501 * 109.47213 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47139 * 120.00025 * 10 8 6 13 13 H 1.48499 * 109.47419 * 239.99748 * 10 8 6 14 14 C 1.46901 * 110.99912 * 298.61175 * 4 3 2 15 15 C 1.53003 * 109.47282 * 288.29165 * 14 4 3 16 16 H 1.09001 * 109.49956 * 56.95332 * 15 14 4 17 17 C 1.53116 * 109.50387 * 177.02829 * 15 14 4 18 18 C 1.53123 * 109.16001 * 177.59918 * 17 15 14 19 19 C 1.53044 * 109.27779 * 302.34852 * 18 17 15 20 20 N 1.46846 * 109.52306 * 59.17658 * 19 18 17 21 21 C 1.46843 * 111.19936 * 298.26050 * 20 19 18 22 22 H 1.08998 * 109.46924 * 59.99906 * 1 2 3 23 23 H 1.09001 * 109.47173 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47138 * 299.99957 * 1 2 3 25 25 H 1.08997 * 109.47404 * 239.99790 * 2 1 3 26 26 H 1.09007 * 109.46894 * 119.99805 * 2 1 3 27 27 H 1.09001 * 109.46728 * 61.34744 * 3 2 1 28 28 H 1.08993 * 109.47222 * 301.34865 * 3 2 1 29 29 H 1.08995 * 109.46962 * 306.04903 * 5 4 3 30 30 H 1.08998 * 109.47426 * 186.04157 * 5 4 3 31 31 H 0.96996 * 120.00123 * 179.97438 * 9 8 6 32 32 H 1.08996 * 109.47642 * 48.29329 * 14 4 3 33 33 H 1.09005 * 109.46928 * 168.29741 * 14 4 3 34 34 H 1.08999 * 109.52719 * 297.50150 * 17 15 14 35 35 H 1.09000 * 109.52363 * 57.70085 * 17 15 14 36 36 H 1.08999 * 109.50460 * 62.28375 * 18 17 15 37 37 H 1.08997 * 109.50104 * 182.36640 * 18 17 15 38 38 H 1.08998 * 109.45775 * 179.19751 * 19 18 17 39 39 H 1.09004 * 109.45899 * 299.16252 * 19 18 17 40 40 H 1.00900 * 110.99578 * 174.15759 * 20 19 18 41 41 H 1.08997 * 109.46008 * 301.72359 * 21 20 19 42 42 H 1.08997 * 109.46140 * 181.76110 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5087 1.4426 -0.0326 5 6 4.0080 0.8203 -1.2660 6 6 3.6230 1.6708 -2.4491 7 1 3.0638 2.5826 -2.2995 8 6 3.9901 1.2880 -3.7217 9 7 4.6715 0.1779 -3.9038 10 14 3.5196 2.3461 -5.1875 11 1 2.7615 3.5335 -4.7179 12 1 4.7490 2.7912 -5.8917 13 1 2.6750 1.5552 -6.1183 14 6 4.0616 0.7764 1.1543 15 6 3.8488 1.6635 2.3826 16 1 2.7865 1.8801 2.4953 17 6 4.3579 0.9383 3.6313 18 6 4.1965 1.8560 4.8464 19 6 4.9599 3.1594 4.6001 20 7 4.4353 3.8153 3.3956 21 6 4.6222 2.9724 2.2078 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.6966 1.9493 0.9019 28 1 1.6572 1.9633 -0.8776 29 1 3.5711 -0.1724 -1.3747 30 1 5.0936 0.7362 -1.2169 31 1 4.9294 -0.0915 -4.7992 32 1 3.5568 -0.1780 1.3036 33 1 5.1284 0.6047 1.0106 34 1 3.7803 0.0267 3.7841 35 1 5.4106 0.6864 3.5025 36 1 3.1399 2.0764 4.9982 37 1 4.5959 1.3612 5.7316 38 1 4.8352 3.8207 5.4575 39 1 6.0186 2.9396 4.4621 40 1 4.8571 4.7226 3.2653 41 1 5.6825 2.7536 2.0810 42 1 4.2523 3.4981 1.3276 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233054653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:37 Heat of formation + Delta-G solvation = -36.161311 kcal Electronic energy + Delta-G solvation = -18252.536663 eV Core-core repulsion = 15651.580427 eV Total energy + Delta-G solvation = -2600.956236 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.16638 -38.39426 -34.87189 -34.00612 -32.91889 -31.92801 -28.97442 -27.26244 -25.62420 -24.62134 -23.65043 -22.77891 -20.80959 -20.25175 -18.36251 -17.34138 -16.87421 -16.40983 -16.29895 -15.39460 -15.30708 -15.19661 -14.75881 -14.55376 -14.20505 -13.83496 -13.73044 -13.31938 -13.13144 -12.89758 -12.70372 -12.59963 -12.46951 -12.27747 -12.20740 -12.02071 -11.80262 -11.59830 -11.40408 -11.21246 -11.11702 -10.93566 -10.58035 -9.33518 -8.81232 -8.17919 -6.26689 1.39982 1.40827 1.54187 2.41153 3.14585 3.33883 3.37009 3.94534 4.01019 4.06242 4.13924 4.20160 4.28052 4.45177 4.51417 4.58964 4.64602 4.71267 4.75492 4.79797 4.87569 4.93058 5.00948 5.07697 5.10372 5.13677 5.14693 5.19371 5.23583 5.34361 5.45404 5.47026 5.52309 5.56849 5.70749 6.10727 6.16173 6.43342 6.56281 6.72674 6.90671 7.42634 8.93082 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024959 B = 0.006175 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.580026 B = 4533.032184 C = 5070.382079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C 0.070 3.930 4 N -0.538 5.538 5 C 0.206 3.794 6 C -0.514 4.514 7 H 0.060 0.940 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.964 3.036 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.279 1.279 14 C 0.057 3.943 15 C -0.065 4.065 16 H 0.071 0.929 17 C -0.115 4.115 18 C -0.111 4.111 19 C 0.054 3.946 20 N -0.696 5.696 21 C 0.079 3.921 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.056 0.944 29 H -0.026 1.026 30 H -0.006 1.006 31 H 0.262 0.738 32 H 0.034 0.966 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.025 0.975 40 H 0.347 0.653 41 H 0.013 0.987 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 3.105 16.058 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.195 4.195 3 C -0.058 4.058 4 N -0.260 5.260 5 C 0.080 3.920 6 C -0.552 4.552 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.577 5.577 10 Si 0.789 3.211 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.205 1.205 14 C -0.071 4.071 15 C -0.085 4.085 16 H 0.089 0.911 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.075 4.075 20 N -0.328 5.328 21 C -0.050 4.050 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.074 0.926 29 H -0.008 1.008 30 H 0.012 0.988 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.043 0.957 40 H 0.166 0.834 41 H 0.031 0.969 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.481 3.301 16.042 16.744 hybrid contribution 0.935 -0.655 -1.501 1.886 sum -2.546 2.646 14.541 14.997 Atomic orbital electron populations 1.21605 0.93912 1.01834 1.02048 1.22053 0.97801 0.99146 1.00513 1.22031 0.87351 0.95176 1.01239 1.62207 1.07626 1.54304 1.01863 1.19391 0.93107 0.92267 0.87248 1.21477 1.34294 1.07981 0.91451 0.92168 1.25857 0.95240 0.96497 1.02028 1.70093 1.40226 1.24628 1.22790 0.85405 0.78012 0.78879 0.78765 1.18766 1.20569 1.20502 1.22167 0.98527 0.95571 0.90885 1.21027 1.00330 0.94114 0.92992 0.91057 1.21615 1.00819 0.98588 0.94317 1.21555 1.01204 0.94750 0.97370 1.22010 0.95933 0.96490 0.93036 1.60295 1.63173 1.06200 1.03106 1.21673 0.96573 0.94221 0.92568 0.93318 0.92321 0.91250 0.94683 0.92005 0.90429 0.92557 1.00832 0.98830 0.92873 0.94805 0.93397 0.91337 0.92675 0.91513 0.89824 0.89330 0.95659 0.83441 0.96870 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.91 71.98 0.71 -3.18 16 2 C -0.16 -5.60 5.30 30.59 0.16 -5.44 16 3 C 0.07 2.71 5.01 86.30 0.43 3.14 16 4 N -0.54 -23.20 4.05 -900.81 -3.65 -26.85 16 5 C 0.21 11.08 4.52 85.56 0.39 11.47 16 6 C -0.51 -29.39 8.48 25.60 0.22 -29.18 16 7 H 0.06 3.41 7.12 -2.91 -0.02 3.39 16 8 C 0.00 0.07 5.46 84.65 0.46 0.53 16 9 N -0.94 -57.11 13.29 21.45 0.28 -56.82 16 10 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 C 0.06 2.08 4.23 86.30 0.37 2.44 16 15 C -0.07 -1.93 2.34 -10.74 -0.03 -1.95 16 16 H 0.07 2.17 6.62 -2.39 -0.02 2.16 16 17 C -0.12 -2.74 5.29 30.67 0.16 -2.57 16 18 C -0.11 -2.17 6.09 30.65 0.19 -1.98 16 19 C 0.05 1.09 6.55 86.33 0.57 1.65 16 20 N -0.70 -17.02 6.84 -514.02 -3.52 -20.53 16 21 C 0.08 2.39 5.69 86.33 0.49 2.88 16 22 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.03 1.52 6.27 -2.39 -0.01 1.51 16 26 H 0.06 2.06 6.27 -2.38 -0.01 2.05 16 27 H 0.08 2.63 6.59 -2.39 -0.02 2.61 16 28 H 0.06 2.42 6.79 -2.39 -0.02 2.40 16 29 H -0.03 -1.49 6.05 -2.39 -0.01 -1.51 16 30 H -0.01 -0.38 7.86 -2.39 -0.02 -0.40 16 31 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.03 1.21 5.84 -2.39 -0.01 1.19 16 33 H 0.05 1.85 7.82 -2.38 -0.02 1.84 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.35 7.43 8.90 -89.69 -0.80 6.63 16 41 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.07 2.34 7.72 -2.39 -0.02 2.33 16 Total: -1.00 -63.23 317.49 -0.56 -63.79 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.18 Total: 15.60 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 4.12 Total: -22.19 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -6.88 Total: -104.21 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.23 -0.56 -63.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233054653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.629 kcal (2) G-P(sol) polarization free energy of solvation -63.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds