Wall clock time and date at job start Mon Mar 30 2020 03:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47030 * 2 1 4 4 H 1.08994 * 109.47323 * 56.97315 * 3 2 1 5 5 C 1.50698 * 109.47078 * 176.98241 * 3 2 1 6 6 H 1.08001 * 120.00279 * 119.99822 * 5 3 2 7 7 C 1.37877 * 119.99930 * 299.99183 * 5 3 2 8 8 N 1.31518 * 119.99739 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00258 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47105 * 90.00159 * 9 7 5 11 11 H 1.48498 * 109.47456 * 210.00085 * 9 7 5 12 12 H 1.48504 * 109.47226 * 330.00500 * 9 7 5 13 13 N 1.46910 * 109.46518 * 296.97730 * 3 2 1 14 14 C 1.46897 * 110.99850 * 295.66343 * 13 3 2 15 15 C 1.46903 * 110.99583 * 171.71417 * 13 3 2 16 16 C 1.52993 * 109.47072 * 199.22745 * 15 13 3 17 17 H 1.09000 * 109.45536 * 295.03020 * 16 15 13 18 18 C 1.53035 * 109.46234 * 175.05107 * 16 15 13 19 19 C 1.53124 * 109.27977 * 180.80503 * 18 16 15 20 20 C 1.53119 * 109.16001 * 57.65537 * 19 18 16 21 21 C 1.53035 * 109.27894 * 302.34865 * 20 19 18 22 22 N 1.46848 * 109.46146 * 55.00237 * 16 15 13 23 23 H 1.08992 * 109.47294 * 295.39530 * 1 2 3 24 24 H 1.09010 * 109.46909 * 55.39371 * 1 2 3 25 25 H 1.08999 * 109.46970 * 175.39016 * 1 2 3 26 26 H 1.08992 * 109.47566 * 239.99983 * 2 1 3 27 27 H 1.09003 * 109.47033 * 119.99244 * 2 1 3 28 28 H 0.97002 * 119.99960 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.47544 * 296.04964 * 14 13 3 30 30 H 1.08998 * 109.46770 * 56.05488 * 14 13 3 31 31 H 1.09005 * 109.46842 * 176.04907 * 14 13 3 32 32 H 1.09001 * 109.47084 * 79.22465 * 15 13 3 33 33 H 1.09001 * 109.47234 * 319.22920 * 15 13 3 34 34 H 1.09005 * 109.50338 * 60.86979 * 18 16 15 35 35 H 1.08994 * 109.53962 * 300.76692 * 18 16 15 36 36 H 1.09000 * 109.52035 * 297.75441 * 19 18 16 37 37 H 1.08999 * 109.52678 * 177.56422 * 19 18 16 38 38 H 1.08992 * 109.50632 * 182.40588 * 20 19 18 39 39 H 1.08999 * 109.50009 * 62.28816 * 20 19 18 40 40 H 1.09006 * 109.46398 * 299.16381 * 21 20 19 41 41 H 1.08994 * 109.46518 * 179.19455 * 21 20 19 42 42 H 1.00898 * 110.99889 * 57.66000 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6330 1.9718 0.8615 5 6 3.5451 1.4432 0.0748 6 1 4.1249 1.8968 -0.7155 7 6 4.1820 0.8649 1.1522 8 7 3.4760 0.3122 2.1144 9 14 6.0477 0.8663 1.2454 10 1 6.5073 2.0912 1.9480 11 1 6.5071 -0.3334 1.9903 12 1 6.6119 0.8423 -0.1281 13 7 1.6107 2.1136 -1.2344 14 6 2.2243 1.4887 -2.4139 15 6 1.9108 3.5507 -1.1840 16 6 1.0558 4.2868 -2.2173 17 1 1.3417 3.9669 -3.2193 18 6 1.2769 5.7949 -2.0809 19 6 0.4042 6.5284 -3.1033 20 6 -1.0620 6.1500 -2.8759 21 6 -1.2153 4.6315 -2.9892 22 7 -0.3614 3.9761 -1.9903 23 1 -0.3633 0.4407 0.9283 24 1 -0.3633 0.5837 -0.8459 25 1 -0.3633 -1.0243 -0.0826 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 3.9241 -0.0950 2.8722 29 1 3.3057 1.6187 -2.3728 30 1 1.9863 0.4251 -2.4266 31 1 1.8358 1.9588 -3.3174 32 1 2.9661 3.7096 -1.4060 33 1 1.6875 3.9338 -0.1883 34 1 2.3259 6.0271 -2.2649 35 1 1.0046 6.1138 -1.0748 36 1 0.7029 6.2395 -4.1109 37 1 0.5259 7.6046 -2.9807 38 1 -1.6840 6.6356 -3.6277 39 1 -1.3715 6.4739 -1.8822 40 1 -0.9187 4.3100 -3.9876 41 1 -2.2555 4.3574 -2.8137 42 1 -0.6413 4.2280 -1.0542 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233865635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:53 Heat of formation + Delta-G solvation = -27.542401 kcal Electronic energy + Delta-G solvation = -18563.451271 eV Core-core repulsion = 15962.868780 eV Total energy + Delta-G solvation = -2600.582492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.07703 -38.42776 -34.83850 -33.34380 -32.42881 -31.77603 -28.65169 -27.66121 -25.82350 -24.35497 -23.68874 -21.75789 -21.17698 -20.68312 -18.37031 -17.02518 -16.45833 -16.17709 -16.06591 -15.48150 -15.11357 -15.00244 -14.71298 -14.31651 -13.98926 -13.64285 -13.30021 -13.10040 -12.94710 -12.83172 -12.70967 -12.58419 -12.34628 -12.26537 -12.11270 -11.89709 -11.67370 -11.53668 -11.47989 -11.31766 -11.10152 -10.82851 -10.40015 -8.91965 -8.74849 -7.96619 -6.22251 1.36342 1.38632 1.47101 2.41255 3.17699 3.38398 3.60109 3.94814 4.06855 4.13808 4.27699 4.41280 4.54681 4.58021 4.63990 4.77297 4.82260 4.84817 4.93466 4.96948 5.01200 5.02982 5.07568 5.14563 5.17444 5.19291 5.23004 5.27954 5.39327 5.47620 5.51128 5.58056 5.70099 5.87102 6.14014 6.27666 6.38611 6.48934 6.69135 6.84477 7.03151 7.49013 8.94869 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028705 B = 0.006689 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.213766 B = 4185.234732 C = 4773.723490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.220 3.780 4 H 0.000 1.000 5 C -0.551 4.551 6 H 0.048 0.952 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.510 5.510 14 C 0.045 3.955 15 C 0.077 3.923 16 C 0.109 3.891 17 H 0.069 0.931 18 C -0.150 4.150 19 C -0.112 4.112 20 C -0.153 4.153 21 C 0.059 3.941 22 N -0.670 5.670 23 H 0.030 0.970 24 H 0.062 0.938 25 H 0.041 0.959 26 H 0.029 0.971 27 H 0.058 0.942 28 H 0.260 0.740 29 H 0.005 0.995 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.017 0.983 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.201 9.653 -9.624 15.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.590 4.590 6 H 0.066 0.934 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.232 5.232 14 C -0.104 4.104 15 C -0.052 4.052 16 C -0.002 4.002 17 H 0.087 0.913 18 C -0.190 4.190 19 C -0.150 4.150 20 C -0.192 4.192 21 C -0.070 4.070 22 N -0.299 5.299 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.679 8.874 -9.835 15.311 hybrid contribution 2.283 0.816 0.941 2.601 sum -5.396 9.690 -8.894 14.217 Atomic orbital electron populations 1.21546 0.96180 0.99615 1.00766 1.21415 0.94559 0.98311 0.99951 1.19055 0.91092 0.91463 0.87097 0.98168 1.22049 0.94347 1.36876 1.05705 0.93394 1.25604 1.01705 0.95058 0.95517 1.70013 1.36264 1.38600 1.10208 0.85787 0.81769 0.77497 0.77944 1.20440 1.20859 1.19824 1.62313 1.56854 1.01394 1.02651 1.22126 0.95674 0.99280 0.93285 1.21888 0.95720 0.89656 0.97935 1.21383 0.88788 0.91839 0.98190 0.91300 1.22234 1.00577 0.96386 0.99834 1.21507 0.94928 0.99900 0.98661 1.22237 0.96581 0.98140 1.02225 1.22049 0.97523 0.91206 0.96263 1.60443 1.01648 1.61271 1.06510 0.95109 0.91853 0.94034 0.95255 0.92379 0.93042 0.97632 0.92903 0.91837 0.96519 0.93680 0.91885 0.92430 0.91869 0.91268 0.90318 0.92293 0.91622 0.90336 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.84 71.98 0.71 -4.41 16 2 C -0.10 -5.07 5.08 30.60 0.16 -4.92 16 3 C 0.22 11.11 1.72 44.17 0.08 11.18 16 4 H 0.00 0.02 7.87 -2.39 -0.02 0.00 16 5 C -0.55 -30.06 7.33 25.60 0.19 -29.87 16 6 H 0.05 2.63 5.94 -2.91 -0.02 2.62 16 7 C 0.02 1.15 5.30 84.65 0.45 1.60 16 8 N -0.91 -52.66 11.30 21.45 0.24 -52.41 16 9 Si 0.94 44.02 29.54 68.60 2.03 46.04 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.51 -21.42 3.67 -901.46 -3.31 -24.72 16 14 C 0.05 1.79 8.74 127.69 1.12 2.91 16 15 C 0.08 2.94 4.12 86.30 0.36 3.29 16 16 C 0.11 3.19 2.42 44.93 0.11 3.30 16 17 H 0.07 2.08 7.10 -2.39 -0.02 2.06 16 18 C -0.15 -3.68 5.36 30.65 0.16 -3.51 16 19 C -0.11 -2.19 6.00 30.68 0.18 -2.00 16 20 C -0.15 -2.77 6.08 30.65 0.19 -2.59 16 21 C 0.06 1.27 6.55 86.32 0.57 1.84 16 22 N -0.67 -18.74 6.23 -491.69 -3.06 -21.80 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.06 2.54 7.56 -2.38 -0.02 2.52 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.03 1.41 6.28 -2.39 -0.02 1.39 16 27 H 0.06 3.20 5.99 -2.39 -0.01 3.19 16 28 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.01 0.23 6.31 -2.39 -0.02 0.21 16 30 H 0.05 2.14 6.18 -2.39 -0.01 2.13 16 31 H 0.06 2.19 6.96 -2.38 -0.02 2.17 16 32 H 0.02 0.68 7.47 -2.39 -0.02 0.66 16 33 H 0.04 1.83 7.77 -2.39 -0.02 1.81 16 34 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.34 9.56 8.79 -89.70 -0.79 8.77 16 Total: -1.00 -58.14 314.56 0.34 -57.80 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.18 Total: 18.26 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 4.26 Total: -23.17 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -6.13 Total: -98.94 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -58.14 0.34 -57.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233865635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.259 kcal (2) G-P(sol) polarization free energy of solvation -58.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds