Wall clock time and date at job start Mon Mar 30 2020 03:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47644 * 2 1 4 4 H 1.09001 * 109.47013 * 56.98761 * 3 2 1 5 5 C 1.50698 * 109.47557 * 176.98933 * 3 2 1 6 6 H 1.07990 * 120.00387 * 119.99749 * 5 3 2 7 7 C 1.37878 * 119.99800 * 300.00554 * 5 3 2 8 8 N 1.31513 * 120.00087 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00125 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47130 * 59.99400 * 9 7 5 11 11 H 1.48499 * 109.47509 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46856 * 299.99551 * 9 7 5 13 13 N 1.46896 * 109.47082 * 296.99010 * 3 2 1 14 14 C 1.46892 * 111.00414 * 295.70172 * 13 3 2 15 15 C 1.46905 * 110.99763 * 171.74472 * 13 3 2 16 16 C 1.53001 * 109.47000 * 199.29618 * 15 13 3 17 17 H 1.09003 * 109.50405 * 304.92384 * 16 15 13 18 18 C 1.53119 * 109.50535 * 184.80517 * 16 15 13 19 19 C 1.53117 * 109.16494 * 182.40375 * 18 16 15 20 20 C 1.53037 * 109.27353 * 57.65612 * 19 18 16 21 21 N 1.46849 * 109.52583 * 300.81931 * 20 19 18 22 22 C 1.46843 * 111.19563 * 61.74533 * 21 20 19 23 23 H 1.09003 * 109.46701 * 295.40100 * 1 2 3 24 24 H 1.09001 * 109.46755 * 55.39679 * 1 2 3 25 25 H 1.09000 * 109.47447 * 175.40244 * 1 2 3 26 26 H 1.09000 * 109.47246 * 240.00011 * 2 1 3 27 27 H 1.08997 * 109.47034 * 120.00478 * 2 1 3 28 28 H 0.96998 * 120.00344 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.47281 * 296.05285 * 14 13 3 30 30 H 1.09004 * 109.47120 * 56.04256 * 14 13 3 31 31 H 1.08998 * 109.47956 * 176.04869 * 14 13 3 32 32 H 1.09000 * 109.46509 * 79.30273 * 15 13 3 33 33 H 1.08999 * 109.47615 * 319.29685 * 15 13 3 34 34 H 1.09000 * 109.52153 * 302.31741 * 18 16 15 35 35 H 1.09000 * 109.52110 * 62.50191 * 18 16 15 36 36 H 1.08993 * 109.50363 * 177.59536 * 19 18 16 37 37 H 1.08999 * 109.50364 * 297.67995 * 19 18 16 38 38 H 1.09007 * 109.46229 * 180.80647 * 20 19 18 39 39 H 1.08997 * 109.46449 * 60.83639 * 20 19 18 40 40 H 1.00896 * 110.99957 * 297.65068 * 21 20 19 41 41 H 1.09003 * 109.46673 * 58.27606 * 22 21 20 42 42 H 1.09007 * 109.46424 * 178.25171 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6334 1.9717 0.8618 5 6 3.5452 1.4431 0.0746 6 1 4.1249 1.8966 -0.7156 7 6 4.1823 0.8644 1.1518 8 7 3.4764 0.3124 2.1144 9 14 6.0480 0.8645 1.2441 10 1 6.5435 2.2645 1.2437 11 1 6.4820 0.1866 2.4920 12 1 6.6016 0.1431 0.0701 13 7 1.6108 2.1136 -1.2341 14 6 2.2232 1.4885 -2.4139 15 6 1.9117 3.5507 -1.1838 16 6 1.0554 4.2875 -2.2157 17 1 1.2116 3.8462 -3.2001 18 6 1.4530 5.7657 -2.2482 19 6 0.5513 6.5071 -3.2391 20 6 -0.9108 6.3252 -2.8253 21 7 -1.2422 4.8946 -2.8101 22 6 -0.4214 4.1699 -1.8316 23 1 -0.3633 0.4408 0.9284 24 1 -0.3633 0.5836 -0.8459 25 1 -0.3634 -1.0243 -0.0824 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.9245 -0.0944 2.8724 29 1 3.3048 1.6177 -2.3733 30 1 1.9847 0.4249 -2.4265 31 1 1.8347 1.9587 -3.3172 32 1 2.9667 3.7089 -1.4077 33 1 1.6902 3.9337 -0.1877 34 1 1.3340 6.1969 -1.2542 35 1 2.4925 5.8564 -2.5635 36 1 0.8013 7.5680 -3.2351 37 1 0.7000 6.1019 -4.2399 38 1 -1.5564 6.8400 -3.5369 39 1 -1.0613 6.7434 -1.8301 40 1 -1.1477 4.4918 -3.7303 41 1 -0.5743 4.5982 -0.8410 42 1 -0.7114 3.1191 -1.8216 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233865664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:19 Heat of formation + Delta-G solvation = -15.142998 kcal Electronic energy + Delta-G solvation = -18546.864146 eV Core-core repulsion = 15946.819333 eV Total energy + Delta-G solvation = -2600.044813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.93208 -36.91451 -33.26335 -31.80763 -31.24778 -30.30976 -26.78516 -26.00386 -23.97361 -23.33245 -22.44412 -20.79399 -19.64752 -18.88998 -16.40117 -15.72772 -15.33863 -14.80974 -14.53407 -14.31645 -13.84824 -13.51993 -13.00239 -12.74958 -12.56989 -12.14889 -11.86917 -11.70975 -11.53332 -11.22579 -11.12208 -11.05659 -10.90144 -10.81409 -10.62713 -10.54507 -10.25653 -10.07203 -9.92579 -9.62910 -9.32180 -9.04338 -8.35722 -8.14535 -7.09443 -5.97871 -4.11347 3.26819 3.32395 3.34655 4.39288 4.50507 4.81853 5.00293 5.07181 5.26004 5.28230 5.37470 5.63915 5.65990 5.75895 5.86590 6.02179 6.09066 6.17298 6.19356 6.21551 6.31019 6.40312 6.48492 6.53993 6.61822 6.69273 6.73425 6.75977 6.82066 7.15525 7.22303 7.23791 7.37995 7.55321 7.63186 7.78121 8.00101 8.18236 8.34414 8.49629 8.98974 9.56060 11.01099 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.006648 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.121677 B = 4210.531540 C = 4809.490769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.535 5.535 14 C 0.034 3.966 15 C 0.075 3.925 16 C -0.117 4.117 17 H 0.063 0.937 18 C -0.116 4.116 19 C -0.155 4.155 20 C 0.057 3.943 21 N -0.690 5.690 22 C 0.071 3.929 23 H 0.037 0.963 24 H 0.050 0.950 25 H 0.024 0.976 26 H 0.032 0.968 27 H 0.090 0.910 28 H 0.261 0.739 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.029 0.971 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.336 0.664 41 H 0.065 0.935 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 7.914 -8.533 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.258 5.258 14 C -0.115 4.115 15 C -0.054 4.054 16 C -0.138 4.138 17 H 0.081 0.919 18 C -0.154 4.154 19 C -0.194 4.194 20 C -0.073 4.073 21 N -0.317 5.317 22 C -0.058 4.058 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.152 0.848 41 H 0.084 0.916 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.746 7.827 -7.934 13.028 hybrid contribution 3.097 0.060 -0.265 3.109 sum -3.649 7.887 -8.200 11.948 Atomic orbital electron populations 1.21721 0.98828 0.98463 1.00623 1.21597 0.92225 0.99214 1.01886 1.19283 0.92597 0.91080 0.86269 0.94529 1.21717 0.92858 1.37545 1.06102 0.92758 1.24903 0.97800 0.95086 0.95601 1.69862 1.34985 1.37791 1.09749 0.86764 0.86381 0.78132 0.77340 1.20464 1.21218 1.20394 1.62407 1.57671 1.01276 1.04460 1.22200 0.97388 0.99390 0.92484 1.21806 0.96182 0.89725 0.97719 1.21873 0.97692 0.94120 1.00071 0.91869 1.21597 0.98840 0.95683 0.99266 1.22243 0.97506 1.00384 0.99294 1.21996 0.93572 0.90179 1.01599 1.60747 1.56999 1.02500 1.11476 1.21996 0.89229 0.99544 0.95009 0.94344 0.93064 0.95708 0.94913 0.89145 0.92860 0.95453 0.92151 0.94465 0.95237 0.91827 0.91977 0.92391 0.92053 0.92403 0.91475 0.91203 0.84757 0.91601 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.84 37.16 0.37 -2.44 16 2 C -0.11 -2.60 5.08 -26.73 -0.14 -2.74 16 3 C 0.21 5.17 1.72 -68.87 -0.12 5.06 16 4 H 0.04 0.99 7.87 -51.93 -0.41 0.58 16 5 C -0.54 -14.38 7.33 -34.44 -0.25 -14.64 16 6 H 0.05 1.45 5.94 -52.49 -0.31 1.14 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.81 11.30 55.43 0.63 -24.18 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.53 -10.84 3.42 -236.29 -0.81 -11.65 16 14 C 0.03 0.66 8.74 60.06 0.52 1.19 16 15 C 0.08 1.40 3.87 -3.82 -0.01 1.39 16 16 C -0.12 -1.74 2.38 -90.54 -0.22 -1.96 16 17 H 0.06 0.96 6.77 -51.93 -0.35 0.61 16 18 C -0.12 -1.52 5.29 -26.61 -0.14 -1.66 16 19 C -0.15 -1.70 6.08 -26.65 -0.16 -1.87 16 20 C 0.06 0.63 6.55 -3.83 -0.03 0.61 16 21 N -0.69 -8.79 6.87 -113.81 -0.78 -9.57 16 22 C 0.07 1.04 5.71 -3.83 -0.02 1.02 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.99 7.56 -51.93 -0.39 0.60 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.03 0.76 6.28 -51.93 -0.33 0.43 16 27 H 0.09 2.39 6.00 -51.93 -0.31 2.08 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.03 0.57 6.32 -51.93 -0.33 0.24 16 30 H 0.06 1.19 6.17 -51.93 -0.32 0.87 16 31 H 0.04 0.63 6.78 -51.93 -0.35 0.27 16 32 H 0.03 0.60 7.47 -51.93 -0.39 0.21 16 33 H 0.06 1.26 7.77 -51.93 -0.40 0.86 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.34 3.95 8.86 -39.29 -0.35 3.60 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.46 7.78 -51.93 -0.40 1.05 16 LS Contribution 313.49 15.07 4.72 4.72 Total: -1.00 -26.58 313.49 -9.14 -35.71 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.59 Total: 3.16 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -0.29 Total: -14.28 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.96 Total: -45.40 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.58 -9.14 -35.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233865664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.571 kcal (2) G-P(sol) polarization free energy of solvation -26.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds