Wall clock time and date at job start Mon Mar 30 2020 03:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47644 * 2 1 4 4 H 1.09001 * 109.47013 * 56.98761 * 3 2 1 5 5 C 1.50698 * 109.47557 * 176.98933 * 3 2 1 6 6 H 1.07990 * 120.00387 * 119.99749 * 5 3 2 7 7 C 1.37878 * 119.99800 * 300.00554 * 5 3 2 8 8 N 1.31513 * 120.00087 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00125 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47130 * 59.99400 * 9 7 5 11 11 H 1.48499 * 109.47509 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46856 * 299.99551 * 9 7 5 13 13 N 1.46896 * 109.47082 * 296.99010 * 3 2 1 14 14 C 1.46892 * 111.00414 * 295.70172 * 13 3 2 15 15 C 1.46905 * 110.99763 * 171.74472 * 13 3 2 16 16 C 1.53001 * 109.47000 * 199.29618 * 15 13 3 17 17 H 1.09003 * 109.50405 * 304.92384 * 16 15 13 18 18 C 1.53119 * 109.50535 * 184.80517 * 16 15 13 19 19 C 1.53117 * 109.16494 * 182.40375 * 18 16 15 20 20 C 1.53037 * 109.27353 * 57.65612 * 19 18 16 21 21 N 1.46849 * 109.52583 * 300.81931 * 20 19 18 22 22 C 1.46843 * 111.19563 * 61.74533 * 21 20 19 23 23 H 1.09003 * 109.46701 * 295.40100 * 1 2 3 24 24 H 1.09001 * 109.46755 * 55.39679 * 1 2 3 25 25 H 1.09000 * 109.47447 * 175.40244 * 1 2 3 26 26 H 1.09000 * 109.47246 * 240.00011 * 2 1 3 27 27 H 1.08997 * 109.47034 * 120.00478 * 2 1 3 28 28 H 0.96998 * 120.00344 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.47281 * 296.05285 * 14 13 3 30 30 H 1.09004 * 109.47120 * 56.04256 * 14 13 3 31 31 H 1.08998 * 109.47956 * 176.04869 * 14 13 3 32 32 H 1.09000 * 109.46509 * 79.30273 * 15 13 3 33 33 H 1.08999 * 109.47615 * 319.29685 * 15 13 3 34 34 H 1.09000 * 109.52153 * 302.31741 * 18 16 15 35 35 H 1.09000 * 109.52110 * 62.50191 * 18 16 15 36 36 H 1.08993 * 109.50363 * 177.59536 * 19 18 16 37 37 H 1.08999 * 109.50364 * 297.67995 * 19 18 16 38 38 H 1.09007 * 109.46229 * 180.80647 * 20 19 18 39 39 H 1.08997 * 109.46449 * 60.83639 * 20 19 18 40 40 H 1.00896 * 110.99957 * 297.65068 * 21 20 19 41 41 H 1.09003 * 109.46673 * 58.27606 * 22 21 20 42 42 H 1.09007 * 109.46424 * 178.25171 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6334 1.9717 0.8618 5 6 3.5452 1.4431 0.0746 6 1 4.1249 1.8966 -0.7156 7 6 4.1823 0.8644 1.1518 8 7 3.4764 0.3124 2.1144 9 14 6.0480 0.8645 1.2441 10 1 6.5435 2.2645 1.2437 11 1 6.4820 0.1866 2.4920 12 1 6.6016 0.1431 0.0701 13 7 1.6108 2.1136 -1.2341 14 6 2.2232 1.4885 -2.4139 15 6 1.9117 3.5507 -1.1838 16 6 1.0554 4.2875 -2.2157 17 1 1.2116 3.8462 -3.2001 18 6 1.4530 5.7657 -2.2482 19 6 0.5513 6.5071 -3.2391 20 6 -0.9108 6.3252 -2.8253 21 7 -1.2422 4.8946 -2.8101 22 6 -0.4214 4.1699 -1.8316 23 1 -0.3633 0.4408 0.9284 24 1 -0.3633 0.5836 -0.8459 25 1 -0.3634 -1.0243 -0.0824 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.9245 -0.0944 2.8724 29 1 3.3048 1.6177 -2.3733 30 1 1.9847 0.4249 -2.4265 31 1 1.8347 1.9587 -3.3172 32 1 2.9667 3.7089 -1.4077 33 1 1.6902 3.9337 -0.1877 34 1 1.3340 6.1969 -1.2542 35 1 2.4925 5.8564 -2.5635 36 1 0.8013 7.5680 -3.2351 37 1 0.7000 6.1019 -4.2399 38 1 -1.5564 6.8400 -3.5369 39 1 -1.0613 6.7434 -1.8301 40 1 -1.1477 4.4918 -3.7303 41 1 -0.5743 4.5982 -0.8410 42 1 -0.7114 3.1191 -1.8216 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233865664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:19 Heat of formation + Delta-G solvation = -31.535200 kcal Electronic energy + Delta-G solvation = -18547.574965 eV Core-core repulsion = 15946.819333 eV Total energy + Delta-G solvation = -2600.755632 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17809 -38.51515 -34.99762 -33.51275 -32.48995 -31.66868 -28.69632 -27.50906 -25.70325 -24.42187 -24.00431 -22.01536 -20.91785 -20.75634 -18.41297 -17.11411 -16.75578 -16.27758 -16.04878 -15.51385 -15.28369 -15.11387 -14.65681 -14.16409 -14.07093 -13.55007 -13.34320 -13.11734 -12.99968 -12.84547 -12.76467 -12.64700 -12.46966 -12.31032 -12.12657 -12.01854 -11.73820 -11.62260 -11.51092 -11.31775 -11.09291 -10.82233 -10.43424 -9.22020 -8.85906 -8.02463 -6.25844 1.35814 1.36767 1.43886 2.38728 3.14511 3.40179 3.52397 3.85752 4.04272 4.16310 4.19936 4.45484 4.51732 4.61212 4.66916 4.72944 4.75410 4.76469 4.79846 4.93298 4.95574 5.05278 5.07784 5.10752 5.12622 5.20762 5.23261 5.33637 5.39400 5.45871 5.52219 5.53277 5.64561 5.82040 6.08189 6.17090 6.22833 6.39981 6.60366 6.69772 6.96385 7.45049 8.91469 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.006648 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.121677 B = 4210.531540 C = 4809.490769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.552 4.552 6 H 0.048 0.952 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.274 1.274 13 N -0.527 5.527 14 C 0.040 3.960 15 C 0.080 3.920 16 C -0.103 4.103 17 H 0.068 0.932 18 C -0.116 4.116 19 C -0.146 4.146 20 C 0.056 3.944 21 N -0.691 5.691 22 C 0.081 3.919 23 H 0.031 0.969 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.032 0.968 27 H 0.059 0.941 28 H 0.261 0.739 29 H 0.008 0.992 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.011 0.989 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.344 0.656 41 H 0.052 0.948 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 8.801 -10.318 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.592 4.592 6 H 0.066 0.934 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.250 5.250 14 C -0.109 4.109 15 C -0.050 4.050 16 C -0.124 4.124 17 H 0.086 0.914 18 C -0.154 4.154 19 C -0.185 4.185 20 C -0.074 4.074 21 N -0.319 5.319 22 C -0.048 4.048 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.030 0.970 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.162 0.838 41 H 0.071 0.929 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.172 8.726 -9.740 14.915 hybrid contribution 3.211 -0.183 0.282 3.229 sum -3.960 8.543 -9.458 13.347 Atomic orbital electron populations 1.21579 0.96178 0.99934 1.00686 1.21437 0.94542 0.98160 1.00256 1.19052 0.91329 0.91511 0.86833 0.98106 1.21972 0.94202 1.37119 1.05863 0.93421 1.25595 1.01756 0.94999 0.95456 1.69992 1.36399 1.38433 1.10141 0.85844 0.81678 0.78076 0.77417 1.20248 1.20808 1.19924 1.62385 1.57251 1.01949 1.03366 1.22196 0.96187 0.99505 0.93014 1.21813 0.95982 0.89067 0.98109 1.21742 0.97120 0.94914 0.98580 0.91382 1.21593 0.99444 0.94475 0.99865 1.22179 0.96570 1.01082 0.98683 1.22074 0.94154 0.89110 1.02039 1.60710 1.56339 1.03338 1.11551 1.21767 0.89108 0.98837 0.95117 0.95015 0.92045 0.93638 0.94945 0.92228 0.92945 0.97383 0.92440 0.91336 0.97049 0.93809 0.92632 0.92535 0.90327 0.91605 0.89260 0.91771 0.83784 0.92920 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.84 71.98 0.71 -4.33 16 2 C -0.11 -5.02 5.08 30.59 0.16 -4.86 16 3 C 0.22 10.92 1.72 44.17 0.08 11.00 16 4 H 0.00 0.06 7.87 -2.39 -0.02 0.04 16 5 C -0.55 -29.89 7.33 25.60 0.19 -29.70 16 6 H 0.05 2.60 5.94 -2.92 -0.02 2.58 16 7 C 0.02 1.20 5.30 84.66 0.45 1.65 16 8 N -0.91 -52.20 11.30 21.45 0.24 -51.96 16 9 Si 0.94 43.74 29.54 68.60 2.03 45.76 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 N -0.53 -21.46 3.42 -901.48 -3.08 -24.54 16 14 C 0.04 1.50 8.74 127.69 1.12 2.61 16 15 C 0.08 3.01 3.87 86.30 0.33 3.34 16 16 C -0.10 -2.95 2.38 -10.74 -0.03 -2.97 16 17 H 0.07 1.91 6.77 -2.39 -0.02 1.90 16 18 C -0.12 -2.86 5.29 30.67 0.16 -2.70 16 19 C -0.15 -2.76 6.08 30.65 0.19 -2.58 16 20 C 0.06 1.08 6.55 86.33 0.57 1.65 16 21 N -0.69 -16.01 6.87 -513.98 -3.53 -19.54 16 22 C 0.08 2.30 5.71 86.33 0.49 2.79 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 24 H 0.06 2.31 7.56 -2.39 -0.02 2.29 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.03 1.51 6.28 -2.39 -0.01 1.49 16 27 H 0.06 3.22 6.00 -2.39 -0.01 3.21 16 28 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.01 0.32 6.32 -2.38 -0.02 0.31 16 30 H 0.06 2.20 6.17 -2.38 -0.01 2.19 16 31 H 0.07 2.16 6.78 -2.39 -0.02 2.14 16 32 H 0.01 0.46 7.47 -2.39 -0.02 0.45 16 33 H 0.04 1.80 7.77 -2.39 -0.02 1.79 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.34 7.08 8.86 -89.70 -0.79 6.29 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 2.33 7.78 -2.38 -0.02 2.31 16 Total: -1.00 -57.52 313.49 0.25 -57.27 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.18 Total: 17.10 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 4.41 Total: -24.10 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -6.37 Total: -96.04 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -57.52 0.25 -57.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233865664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.736 kcal (2) G-P(sol) polarization free energy of solvation -57.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds