Wall clock time and date at job start Mon Mar 30 2020 03:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47234 * 2 1 4 4 H 1.09004 * 109.47108 * 54.90221 * 3 2 1 5 5 C 1.50701 * 109.46967 * 174.89946 * 3 2 1 6 6 H 1.07996 * 119.99775 * 114.62020 * 5 3 2 7 7 C 1.37877 * 120.00062 * 294.60959 * 5 3 2 8 8 N 1.31514 * 119.99960 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99919 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47045 * 90.00396 * 9 7 5 11 11 H 1.48494 * 109.46956 * 210.00302 * 9 7 5 12 12 H 1.48499 * 109.47154 * 330.00087 * 9 7 5 13 13 N 1.46904 * 109.47241 * 294.90030 * 3 2 1 14 14 C 1.46896 * 110.99789 * 86.73754 * 13 3 2 15 15 C 1.53002 * 109.47226 * 71.97768 * 14 13 3 16 16 C 1.46904 * 110.99557 * 322.78543 * 13 3 2 17 17 C 1.52995 * 109.46777 * 197.05222 * 16 13 3 18 18 H 1.08998 * 110.36920 * 297.35114 * 17 16 13 19 19 C 1.54384 * 110.41054 * 175.00161 * 17 16 13 20 20 C 1.54259 * 105.06096 * 217.36819 * 19 17 16 21 21 C 1.54379 * 105.05980 * 0.02562 * 20 19 17 22 22 N 1.48553 * 104.59631 * 23.85034 * 21 20 19 23 23 H 1.09011 * 109.46996 * 311.59220 * 1 2 3 24 24 H 1.08996 * 109.47531 * 71.59359 * 1 2 3 25 25 H 1.09005 * 109.47140 * 191.59436 * 1 2 3 26 26 H 1.09000 * 109.47086 * 239.99612 * 2 1 3 27 27 H 1.09001 * 109.47177 * 120.00127 * 2 1 3 28 28 H 0.97001 * 119.99711 * 179.97438 * 8 7 5 29 29 H 1.09010 * 109.46610 * 191.97296 * 14 13 3 30 30 H 1.09000 * 109.47628 * 311.97184 * 14 13 3 31 31 H 1.08998 * 109.46688 * 294.36878 * 15 14 13 32 32 H 1.08996 * 109.47006 * 54.36380 * 15 14 13 33 33 H 1.08994 * 109.47174 * 174.36269 * 15 14 13 34 34 H 1.08998 * 109.47086 * 317.05193 * 16 13 3 35 35 H 1.09000 * 109.47104 * 77.05336 * 16 13 3 36 36 H 1.09003 * 110.32316 * 336.26485 * 19 17 16 37 37 H 1.09002 * 110.32245 * 98.47311 * 19 17 16 38 38 H 1.09001 * 110.32345 * 118.89590 * 20 19 17 39 39 H 1.09002 * 110.32469 * 241.00385 * 20 19 17 40 40 H 1.08998 * 110.41196 * 142.63468 * 21 20 19 41 41 H 1.09006 * 110.40798 * 264.95517 * 21 20 19 42 42 H 1.00901 * 111.00508 * 200.96079 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6040 1.9820 0.8408 5 6 3.5417 1.4443 0.1263 6 1 4.1515 1.8092 -0.6869 7 6 4.1370 0.9803 1.2801 8 7 3.3944 0.5356 2.2703 9 14 5.9984 0.9832 1.4369 10 1 6.4439 2.2734 2.0218 11 1 6.4225 -0.1331 2.3196 12 1 6.6086 0.8115 0.0940 13 7 1.6534 2.0986 -1.2563 14 6 0.3092 2.6819 -1.1535 15 6 0.3564 3.9158 -0.2501 16 6 1.7365 1.1631 -2.3859 17 6 1.7490 1.9487 -3.6987 18 1 0.8193 2.5052 -3.8167 19 6 1.9615 0.9956 -4.8945 20 6 2.8611 1.7765 -5.8745 21 6 3.1170 3.1355 -5.1882 22 7 2.9158 2.8677 -3.7409 23 1 -0.3633 0.6823 0.7687 24 1 -0.3634 0.3245 -0.9750 25 1 -0.3634 -1.0067 0.2065 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8133 0.2088 3.0818 29 1 -0.0382 2.9710 -2.1455 30 1 -0.3746 1.9468 -0.7291 31 1 0.6069 3.6125 0.7664 32 1 1.1130 4.6079 -0.6196 33 1 -0.6171 4.4061 -0.2535 34 1 2.6513 0.5760 -2.3050 35 1 0.8743 0.4964 -2.3696 36 1 2.4605 0.0833 -4.5674 37 1 1.0068 0.7584 -5.3639 38 1 3.8016 1.2476 -6.0286 39 1 2.3486 1.9211 -6.8256 40 1 4.1376 3.4694 -5.3748 41 1 2.4036 3.8801 -5.5416 42 1 2.7220 3.7211 -3.2387 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233865927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:43 Heat of formation + Delta-G solvation = 5.476124 kcal Electronic energy + Delta-G solvation = -18824.912714 eV Core-core repulsion = 16225.762013 eV Total energy + Delta-G solvation = -2599.150701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.76544 -37.09543 -32.86342 -31.11403 -30.69605 -29.86220 -28.52338 -26.52664 -23.78899 -23.12288 -21.09783 -20.66784 -19.87037 -18.58782 -16.47467 -16.23231 -15.48198 -14.64065 -14.23770 -14.14816 -13.76259 -13.52584 -12.89819 -12.54555 -12.44643 -11.83620 -11.78694 -11.67459 -11.34979 -11.19303 -11.04828 -10.97958 -10.75416 -10.70698 -10.55129 -10.44651 -10.40138 -10.13123 -9.96230 -9.64659 -9.36733 -8.80048 -8.21748 -8.02402 -6.90047 -5.88241 -3.88200 3.40641 3.46639 3.52647 4.53064 4.60967 4.86515 5.05735 5.19815 5.28349 5.43329 5.47626 5.72516 5.75775 5.86728 5.92481 6.00099 6.01879 6.08692 6.13759 6.17983 6.20314 6.28132 6.33574 6.38569 6.46936 6.48746 6.65400 6.83320 6.84124 6.93845 7.06110 7.25120 7.35470 7.55936 7.73727 7.86706 8.03790 8.35766 8.51424 8.75301 9.22198 9.75863 11.19868 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.008772 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.486680 B = 3191.364693 C = 3878.795513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.149 4.149 3 C 0.217 3.783 4 H 0.041 0.959 5 C -0.484 4.484 6 H 0.067 0.933 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.274 1.274 13 N -0.520 5.520 14 C 0.031 3.969 15 C -0.141 4.141 16 C 0.077 3.923 17 C 0.073 3.927 18 H 0.036 0.964 19 C -0.122 4.122 20 C -0.122 4.122 21 C 0.031 3.969 22 N -0.638 5.638 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.031 0.969 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.257 0.743 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.025 0.975 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.028 0.972 42 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.377 2.547 -11.427 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C 0.111 3.889 4 H 0.059 0.941 5 C -0.523 4.523 6 H 0.085 0.915 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.721 3.279 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.199 1.199 13 N -0.244 5.244 14 C -0.097 4.097 15 C -0.198 4.198 16 C -0.051 4.051 17 C -0.037 4.037 18 H 0.054 0.946 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.098 4.098 22 N -0.268 5.268 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.043 0.957 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.047 0.953 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.473 2.365 -11.214 12.303 hybrid contribution -0.401 -0.097 0.130 0.433 sum -4.875 2.268 -11.084 12.320 Atomic orbital electron populations 1.22125 0.99666 0.99412 0.99651 1.22257 0.91559 1.02593 1.02399 1.19365 0.95574 0.88247 0.85697 0.94100 1.21216 0.91046 1.39332 1.00671 0.91521 1.24936 0.97823 0.95916 0.95939 1.69926 1.34618 1.43799 1.05736 0.86579 0.86238 0.77237 0.77823 1.20979 1.21731 1.19897 1.62298 1.21933 1.34757 1.05435 1.22380 0.92451 0.96766 0.98138 1.21720 0.99678 0.97770 1.00682 1.21997 1.00720 0.93411 0.89006 1.22538 0.91806 0.94006 0.95383 0.94621 1.22327 0.99046 0.99193 0.95475 1.22250 0.99993 0.96165 0.97610 1.22903 1.00492 0.95946 0.90495 1.63564 1.38453 1.17702 1.07075 0.93555 0.94032 0.94970 0.94101 0.89514 0.93319 0.93438 0.94095 0.92319 0.92481 0.94173 0.89696 0.95700 0.90923 0.92191 0.91364 0.92218 0.90810 0.95342 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.14 37.15 0.30 -2.66 16 2 C -0.15 -3.44 4.76 -26.73 -0.13 -3.57 16 3 C 0.22 5.28 1.64 -68.86 -0.11 5.16 16 4 H 0.04 1.11 6.23 -51.93 -0.32 0.78 16 5 C -0.48 -13.23 8.30 -34.44 -0.29 -13.52 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.05 1.49 5.30 -17.82 -0.09 1.40 16 8 N -0.90 -25.84 11.71 55.43 0.65 -25.19 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.52 -10.63 4.10 -228.03 -0.93 -11.57 16 14 C 0.03 0.55 5.11 -3.83 -0.02 0.53 16 15 C -0.14 -2.43 9.90 37.16 0.37 -2.06 16 16 C 0.08 1.45 2.99 -3.82 -0.01 1.44 16 17 C 0.07 1.16 3.12 -66.06 -0.21 0.95 16 18 H 0.04 0.55 6.75 -51.93 -0.35 0.20 16 19 C -0.12 -1.66 6.55 -25.35 -0.17 -1.83 16 20 C -0.12 -1.50 7.00 -25.35 -0.18 -1.68 16 21 C 0.03 0.42 7.47 -2.19 -0.02 0.40 16 22 N -0.64 -10.47 7.15 -102.74 -0.73 -11.20 16 23 H 0.05 0.92 7.62 -51.92 -0.40 0.52 16 24 H 0.04 0.75 4.76 -51.93 -0.25 0.50 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.93 5.99 -51.93 -0.31 0.62 16 27 H 0.09 2.29 6.41 -51.93 -0.33 1.96 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.05 0.77 6.43 -51.92 -0.33 0.44 16 30 H 0.04 0.74 4.14 -51.93 -0.21 0.53 16 31 H 0.06 1.13 6.72 -51.93 -0.35 0.79 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.84 6.86 -51.93 -0.36 1.48 16 35 H 0.03 0.46 5.70 -51.93 -0.30 0.16 16 36 H 0.07 1.04 7.82 -51.93 -0.41 0.63 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.34 5.71 8.92 -39.29 -0.35 5.36 16 LS Contribution 309.69 15.07 4.67 4.67 Total: -1.00 -27.84 309.69 -9.12 -36.95 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.19 Total: 4.87 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -0.55 Total: -15.42 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -1.02 Total: -47.96 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.84 -9.12 -36.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233865927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.427 kcal (2) G-P(sol) polarization free energy of solvation -27.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds