Wall clock time and date at job start Mon Mar 30 2020 03:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47234 * 2 1 4 4 H 1.09004 * 109.47108 * 54.90221 * 3 2 1 5 5 C 1.50701 * 109.46967 * 174.89946 * 3 2 1 6 6 H 1.07996 * 119.99775 * 114.62020 * 5 3 2 7 7 C 1.37877 * 120.00062 * 294.60959 * 5 3 2 8 8 N 1.31514 * 119.99960 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99919 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47045 * 90.00396 * 9 7 5 11 11 H 1.48494 * 109.46956 * 210.00302 * 9 7 5 12 12 H 1.48499 * 109.47154 * 330.00087 * 9 7 5 13 13 N 1.46904 * 109.47241 * 294.90030 * 3 2 1 14 14 C 1.46896 * 110.99789 * 86.73754 * 13 3 2 15 15 C 1.53002 * 109.47226 * 71.97768 * 14 13 3 16 16 C 1.46904 * 110.99557 * 322.78543 * 13 3 2 17 17 C 1.52995 * 109.46777 * 197.05222 * 16 13 3 18 18 H 1.08998 * 110.36920 * 297.35114 * 17 16 13 19 19 C 1.54384 * 110.41054 * 175.00161 * 17 16 13 20 20 C 1.54259 * 105.06096 * 217.36819 * 19 17 16 21 21 C 1.54379 * 105.05980 * 0.02562 * 20 19 17 22 22 N 1.48553 * 104.59631 * 23.85034 * 21 20 19 23 23 H 1.09011 * 109.46996 * 311.59220 * 1 2 3 24 24 H 1.08996 * 109.47531 * 71.59359 * 1 2 3 25 25 H 1.09005 * 109.47140 * 191.59436 * 1 2 3 26 26 H 1.09000 * 109.47086 * 239.99612 * 2 1 3 27 27 H 1.09001 * 109.47177 * 120.00127 * 2 1 3 28 28 H 0.97001 * 119.99711 * 179.97438 * 8 7 5 29 29 H 1.09010 * 109.46610 * 191.97296 * 14 13 3 30 30 H 1.09000 * 109.47628 * 311.97184 * 14 13 3 31 31 H 1.08998 * 109.46688 * 294.36878 * 15 14 13 32 32 H 1.08996 * 109.47006 * 54.36380 * 15 14 13 33 33 H 1.08994 * 109.47174 * 174.36269 * 15 14 13 34 34 H 1.08998 * 109.47086 * 317.05193 * 16 13 3 35 35 H 1.09000 * 109.47104 * 77.05336 * 16 13 3 36 36 H 1.09003 * 110.32316 * 336.26485 * 19 17 16 37 37 H 1.09002 * 110.32245 * 98.47311 * 19 17 16 38 38 H 1.09001 * 110.32345 * 118.89590 * 20 19 17 39 39 H 1.09002 * 110.32469 * 241.00385 * 20 19 17 40 40 H 1.08998 * 110.41196 * 142.63468 * 21 20 19 41 41 H 1.09006 * 110.40798 * 264.95517 * 21 20 19 42 42 H 1.00901 * 111.00508 * 200.96079 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6040 1.9820 0.8408 5 6 3.5417 1.4443 0.1263 6 1 4.1515 1.8092 -0.6869 7 6 4.1370 0.9803 1.2801 8 7 3.3944 0.5356 2.2703 9 14 5.9984 0.9832 1.4369 10 1 6.4439 2.2734 2.0218 11 1 6.4225 -0.1331 2.3196 12 1 6.6086 0.8115 0.0940 13 7 1.6534 2.0986 -1.2563 14 6 0.3092 2.6819 -1.1535 15 6 0.3564 3.9158 -0.2501 16 6 1.7365 1.1631 -2.3859 17 6 1.7490 1.9487 -3.6987 18 1 0.8193 2.5052 -3.8167 19 6 1.9615 0.9956 -4.8945 20 6 2.8611 1.7765 -5.8745 21 6 3.1170 3.1355 -5.1882 22 7 2.9158 2.8677 -3.7409 23 1 -0.3633 0.6823 0.7687 24 1 -0.3634 0.3245 -0.9750 25 1 -0.3634 -1.0067 0.2065 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8133 0.2088 3.0818 29 1 -0.0382 2.9710 -2.1455 30 1 -0.3746 1.9468 -0.7291 31 1 0.6069 3.6125 0.7664 32 1 1.1130 4.6079 -0.6196 33 1 -0.6171 4.4061 -0.2535 34 1 2.6513 0.5760 -2.3050 35 1 0.8743 0.4964 -2.3696 36 1 2.4605 0.0833 -4.5674 37 1 1.0068 0.7584 -5.3639 38 1 3.8016 1.2476 -6.0286 39 1 2.3486 1.9211 -6.8256 40 1 4.1376 3.4694 -5.3748 41 1 2.4036 3.8801 -5.5416 42 1 2.7220 3.7211 -3.2387 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233865927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:42 Heat of formation + Delta-G solvation = -13.068546 kcal Electronic energy + Delta-G solvation = -18825.716872 eV Core-core repulsion = 16225.762013 eV Total energy + Delta-G solvation = -2599.954858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.19941 -38.50074 -34.82496 -32.90377 -32.05991 -30.98575 -30.10602 -28.25694 -25.33684 -24.89291 -22.58198 -21.94190 -21.15070 -20.24581 -18.33749 -17.61356 -16.95768 -16.46301 -15.80848 -15.50688 -15.31340 -15.11639 -14.32935 -14.26926 -13.65993 -13.45792 -13.15425 -13.07857 -12.82019 -12.74484 -12.70217 -12.59827 -12.36501 -12.18584 -12.10268 -12.04138 -11.96678 -11.59286 -11.50460 -11.31290 -11.08247 -10.78564 -10.33610 -9.23218 -8.54705 -8.01975 -6.08347 1.42508 1.43504 1.54462 2.48754 3.25860 3.37509 3.55287 3.95733 3.99267 4.19810 4.29868 4.36086 4.42385 4.47810 4.56360 4.61335 4.68363 4.74598 4.80191 4.84241 4.93096 5.00230 5.04386 5.09313 5.10428 5.17936 5.20804 5.28054 5.32503 5.39441 5.48793 5.50516 5.66576 5.82199 5.88986 6.13760 6.41516 6.63064 6.72664 6.93418 7.07865 7.59550 9.04022 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018845 B = 0.008772 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.486680 B = 3191.364693 C = 3878.795513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.141 4.141 3 C 0.226 3.774 4 H 0.010 0.990 5 C -0.494 4.494 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.925 5.925 9 Si 0.949 3.051 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.527 5.527 14 C 0.031 3.969 15 C -0.135 4.135 16 C 0.084 3.916 17 C 0.078 3.922 18 H 0.048 0.952 19 C -0.121 4.121 20 C -0.118 4.118 21 C 0.032 3.968 22 N -0.665 5.665 23 H 0.039 0.961 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.257 0.743 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.028 0.972 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.031 0.969 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 3.014 -13.422 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.181 4.181 3 C 0.119 3.881 4 H 0.028 0.972 5 C -0.533 4.533 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.776 3.224 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.250 5.250 14 C -0.097 4.097 15 C -0.193 4.193 16 C -0.044 4.044 17 C -0.032 4.032 18 H 0.066 0.934 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.097 4.097 22 N -0.295 5.295 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.410 2.836 -13.229 14.571 hybrid contribution -0.115 -0.215 0.726 0.766 sum -5.525 2.621 -12.503 13.918 Atomic orbital electron populations 1.21974 0.96592 1.00408 1.00616 1.22068 0.94272 1.01332 1.00437 1.19041 0.93727 0.88714 0.86635 0.97202 1.21447 0.92887 1.38864 1.00111 0.93173 1.25599 1.01604 0.95877 0.95839 1.70042 1.35966 1.44547 1.06030 0.85694 0.81785 0.77287 0.77640 1.20600 1.21264 1.19836 1.62195 1.23991 1.34703 1.04152 1.22454 0.90831 0.96727 0.99677 1.21670 1.01335 0.97623 0.98644 1.21921 0.99081 0.93431 0.90002 1.22463 0.92261 0.94208 0.94315 0.93376 1.22338 1.00453 0.98205 0.94951 1.22261 0.99903 0.95163 0.98268 1.22964 1.01130 0.97013 0.88618 1.63534 1.38929 1.17768 1.09287 0.94154 0.91992 0.93364 0.94261 0.93144 0.93428 0.90848 0.94056 0.95313 0.92938 0.90914 0.93311 0.95073 0.92291 0.89883 0.91685 0.89549 0.90665 0.93640 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 8.14 71.98 0.59 -4.72 16 2 C -0.14 -6.68 4.76 30.59 0.15 -6.53 16 3 C 0.23 11.26 1.64 44.17 0.07 11.34 16 4 H 0.01 0.56 6.23 -2.38 -0.01 0.55 16 5 C -0.49 -27.87 8.30 25.60 0.21 -27.65 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.46 5.30 84.65 0.45 0.91 16 8 N -0.92 -54.55 11.71 21.45 0.25 -54.30 16 9 Si 0.95 45.87 29.54 68.60 2.03 47.89 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 13 N -0.53 -21.48 4.10 -875.36 -3.59 -25.07 16 14 C 0.03 1.05 5.11 86.30 0.44 1.49 16 15 C -0.14 -4.52 9.90 71.98 0.71 -3.81 16 16 C 0.08 3.11 2.99 86.30 0.26 3.37 16 17 C 0.08 2.32 3.12 45.06 0.14 2.46 16 18 H 0.05 1.33 6.75 -2.39 -0.02 1.31 16 19 C -0.12 -3.00 6.55 31.49 0.21 -2.79 16 20 C -0.12 -2.56 7.00 31.49 0.22 -2.34 16 21 C 0.03 0.77 7.47 86.45 0.65 1.42 16 22 N -0.67 -21.05 7.15 -478.95 -3.42 -24.47 16 23 H 0.04 1.57 7.62 -2.38 -0.02 1.56 16 24 H 0.06 2.10 4.76 -2.39 -0.01 2.09 16 25 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.04 1.82 5.99 -2.39 -0.01 1.81 16 27 H 0.05 2.74 6.41 -2.39 -0.02 2.73 16 28 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.07 2.15 6.43 -2.38 -0.02 2.13 16 30 H 0.04 1.42 4.14 -2.39 -0.01 1.41 16 31 H 0.03 1.11 6.72 -2.39 -0.02 1.10 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 2.15 6.86 -2.39 -0.02 2.13 16 35 H 0.03 1.10 5.70 -2.39 -0.01 1.09 16 36 H 0.06 1.62 7.82 -2.39 -0.02 1.60 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.34 10.95 8.92 -89.69 -0.80 10.15 16 Total: -1.00 -61.32 309.69 -0.45 -61.77 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.19 Total: 21.03 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 4.09 Total: -26.86 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -6.76 Total: -103.84 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -61.32 -0.45 -61.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233865927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.704 kcal (2) G-P(sol) polarization free energy of solvation -61.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds