Wall clock time and date at job start Mon Mar 30 2020 03:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47031 * 2 1 4 4 H 1.09003 * 109.47127 * 57.00739 * 3 2 1 5 5 C 1.50700 * 109.47163 * 177.00245 * 3 2 1 6 6 H 1.07997 * 120.00158 * 114.54698 * 5 3 2 7 7 C 1.37887 * 120.00079 * 294.54935 * 5 3 2 8 8 N 1.31517 * 119.99651 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99877 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47260 * 89.99884 * 9 7 5 11 11 H 1.48497 * 109.47055 * 210.00061 * 9 7 5 12 12 H 1.48500 * 109.47215 * 329.99553 * 9 7 5 13 13 N 1.46891 * 109.47292 * 297.00476 * 3 2 1 14 14 C 1.40084 * 111.00014 * 316.64184 * 13 3 2 15 15 C 1.54511 * 111.51295 * 188.14745 * 14 13 3 16 16 C 1.50739 * 108.94662 * 283.99242 * 15 14 13 17 17 N 1.48073 * 112.93619 * 92.64780 * 16 15 14 18 18 C 1.46903 * 110.99676 * 192.21964 * 17 16 15 19 19 C 1.47737 * 113.78966 * 318.28410 * 17 16 15 20 20 C 1.47686 * 111.00536 * 85.28432 * 13 3 2 21 21 H 1.08998 * 109.73836 * 271.64702 * 20 13 3 22 22 C 1.53005 * 109.73323 * 32.33629 * 20 13 3 23 23 H 1.09004 * 109.47316 * 307.61109 * 1 2 3 24 24 H 1.09002 * 109.46790 * 187.61829 * 1 2 3 25 25 H 1.08994 * 109.47300 * 67.61381 * 1 2 3 26 26 H 1.09001 * 109.47161 * 120.00253 * 2 1 3 27 27 H 1.08998 * 109.47193 * 240.00339 * 2 1 3 28 28 H 0.96996 * 119.99450 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.07435 * 308.67454 * 14 13 3 30 30 H 1.09004 * 109.07194 * 67.69490 * 14 13 3 31 31 H 1.09000 * 109.56092 * 43.83399 * 15 14 13 32 32 H 1.09002 * 109.56169 * 164.15346 * 15 14 13 33 33 H 1.09003 * 108.79387 * 213.54081 * 16 15 14 34 34 H 1.08997 * 108.79049 * 331.75885 * 16 15 14 35 35 H 1.09004 * 109.47387 * 63.95771 * 18 17 16 36 36 H 1.09004 * 109.46930 * 183.95213 * 18 17 16 37 37 H 1.08998 * 109.47710 * 303.95160 * 18 17 16 38 38 H 1.09004 * 108.99379 * 79.50148 * 19 17 16 39 39 H 1.08999 * 108.99335 * 198.25009 * 19 17 16 40 40 H 1.09002 * 109.47099 * 51.80818 * 22 20 13 41 41 H 1.09001 * 109.46922 * 171.80160 * 22 20 13 42 42 H 1.08994 * 109.47401 * 291.80373 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6334 1.9716 0.8620 5 6 3.5451 1.4432 0.0743 6 1 4.1266 1.8171 -0.7554 7 6 4.1800 0.9664 1.2016 8 7 3.4718 0.5115 2.2122 9 14 6.0456 0.9679 1.2940 10 1 6.5113 2.2516 1.8773 11 1 6.4998 -0.1581 2.1490 12 1 6.6089 0.8113 -0.0711 13 7 1.6103 2.1138 -1.2339 14 6 1.7832 1.2793 -2.3457 15 6 1.5282 2.0370 -3.6679 16 6 0.0425 2.2126 -3.8528 17 7 -0.4589 3.4955 -3.3095 18 6 -1.9266 3.5026 -3.2462 19 6 0.1290 3.8604 -2.0042 20 6 0.2494 2.6687 -1.0883 21 1 -0.4872 1.9149 -1.3662 22 6 0.0217 3.1052 0.3603 23 1 -0.3634 0.6272 0.8141 24 1 -0.3633 -1.0186 0.1362 25 1 -0.3633 0.3914 -0.9502 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.9185 0.1757 3.0051 29 1 2.8028 0.8941 -2.3468 30 1 1.0870 0.4435 -2.2754 31 1 2.0089 3.0144 -3.6270 32 1 1.9343 1.4636 -4.5013 33 1 -0.1865 2.1688 -4.9176 34 1 -0.4729 1.3935 -3.3512 35 1 -2.2638 2.7383 -2.5459 36 1 -2.2710 4.4806 -2.9101 37 1 -2.3340 3.2941 -4.2354 38 1 1.1202 4.2837 -2.1674 39 1 -0.5018 4.6112 -1.5284 40 1 0.8370 3.7563 0.6760 41 1 -0.9228 3.6444 0.4331 42 1 -0.0112 2.2262 1.0038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233866352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:56 Heat of formation + Delta-G solvation = 27.474701 kcal Electronic energy + Delta-G solvation = -19411.774879 eV Core-core repulsion = 16813.578108 eV Total energy + Delta-G solvation = -2598.196771 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.80710 -36.36891 -33.04463 -32.82559 -31.13977 -29.35089 -27.05698 -26.50442 -25.06596 -23.09135 -22.52569 -20.91944 -19.23862 -18.55269 -16.46982 -15.77416 -15.50781 -14.90252 -14.65741 -14.37606 -13.93020 -13.20274 -13.13371 -12.54301 -12.30142 -12.16674 -12.00810 -11.64562 -11.44721 -11.33744 -11.16751 -11.02442 -10.87144 -10.78709 -10.65077 -10.52373 -10.33934 -10.12119 -9.91205 -9.60689 -9.34259 -8.80011 -8.26781 -7.93529 -6.89356 -5.98046 -3.99182 3.33294 3.39806 3.43461 4.19175 4.44430 4.92760 5.21771 5.33744 5.35256 5.45100 5.55167 5.60342 5.71389 5.80028 5.80700 5.95225 6.05383 6.07516 6.13632 6.15438 6.21313 6.31427 6.36474 6.41735 6.46413 6.68985 6.72112 6.78655 6.83040 6.92918 7.07541 7.26579 7.34519 7.40323 7.58149 7.74380 7.90331 8.30916 8.57581 8.71605 9.08160 9.64955 11.09829 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.007812 C = 0.007349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.178041 B = 3583.510956 C = 3808.884485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.146 4.146 3 C 0.208 3.792 4 H 0.061 0.939 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.538 5.538 14 C 0.079 3.921 15 C -0.127 4.127 16 C 0.064 3.936 17 N -0.553 5.553 18 C 0.028 3.972 19 C 0.062 3.938 20 C 0.058 3.942 21 H 0.041 0.959 22 C -0.151 4.151 23 H 0.050 0.950 24 H 0.030 0.970 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.038 0.962 28 H 0.259 0.741 29 H 0.077 0.923 30 H 0.013 0.987 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.027 0.973 35 H 0.021 0.979 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.250 2.922 -7.683 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.186 4.186 3 C 0.102 3.898 4 H 0.078 0.922 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.262 5.262 14 C -0.051 4.051 15 C -0.165 4.165 16 C -0.063 4.063 17 N -0.277 5.277 18 C -0.120 4.120 19 C -0.066 4.066 20 C -0.051 4.051 21 H 0.058 0.942 22 C -0.208 4.208 23 H 0.069 0.931 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.031 0.969 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.794 3.563 -7.913 11.665 hybrid contribution 0.194 -1.478 0.808 1.695 sum -7.600 2.085 -7.106 10.611 Atomic orbital electron populations 1.22237 0.99720 0.99409 1.00135 1.22185 0.91531 1.02663 1.02216 1.19595 0.95094 0.88244 0.86854 0.92185 1.21174 0.90967 1.39759 1.01426 0.92184 1.24920 0.98053 0.95644 0.95713 1.69913 1.34920 1.42841 1.05925 0.86574 0.85986 0.77426 0.77851 1.20796 1.21520 1.20032 1.59382 1.20503 1.41114 1.05160 1.20994 1.01366 0.93159 0.89589 1.21677 0.94625 1.02186 0.98023 1.21829 0.96375 0.89447 0.98679 1.62162 1.05847 1.32394 1.27308 1.22318 0.88462 1.00723 1.00538 1.22157 1.00850 0.96733 0.86816 1.21907 0.91224 0.96320 0.95612 0.94186 1.22159 1.00346 1.02184 0.96145 0.93091 0.95071 0.94059 0.89579 0.94352 0.93133 0.90428 0.96931 0.90212 0.91679 0.92020 0.95475 0.96075 0.91737 0.92164 0.89531 0.91920 0.91344 0.93962 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 8.37 37.16 0.31 -2.79 16 2 C -0.15 -3.37 4.74 -26.73 -0.13 -3.50 16 3 C 0.21 4.95 1.59 -68.87 -0.11 4.84 16 4 H 0.06 1.54 4.74 -51.93 -0.25 1.30 16 5 C -0.49 -13.26 7.97 -34.44 -0.27 -13.54 16 6 H 0.06 1.64 7.59 -52.49 -0.40 1.24 16 7 C 0.06 1.56 5.31 -17.81 -0.09 1.46 16 8 N -0.90 -25.16 11.72 55.43 0.65 -24.51 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.54 -11.04 3.79 -225.12 -0.85 -11.89 16 14 C 0.08 1.52 3.70 -6.55 -0.02 1.49 16 15 C -0.13 -2.03 5.68 -27.07 -0.15 -2.18 16 16 C 0.06 0.95 5.00 -4.31 -0.02 0.93 16 17 N -0.55 -8.22 4.99 -243.98 -1.22 -9.44 16 18 C 0.03 0.35 9.36 60.07 0.56 0.91 16 19 C 0.06 1.00 4.83 -4.48 -0.02 0.98 16 20 C 0.06 1.04 1.46 -68.39 -0.10 0.94 16 21 H 0.04 0.74 3.76 -51.93 -0.20 0.54 16 22 C -0.15 -2.67 7.51 37.16 0.28 -2.39 16 23 H 0.05 0.99 5.71 -51.93 -0.30 0.70 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.04 0.77 4.20 -51.93 -0.22 0.56 16 26 H 0.09 2.25 6.46 -51.93 -0.34 1.91 16 27 H 0.04 0.88 6.32 -51.93 -0.33 0.55 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.08 1.64 7.08 -51.93 -0.37 1.28 16 30 H 0.01 0.25 4.76 -51.93 -0.25 0.01 16 31 H 0.08 1.37 7.19 -51.93 -0.37 0.99 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.03 0.43 6.41 -51.93 -0.33 0.10 16 35 H 0.02 0.27 7.73 -51.93 -0.40 -0.13 16 36 H 0.06 0.73 7.97 -51.93 -0.41 0.32 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.54 7.20 -51.93 -0.37 1.16 16 39 H 0.06 0.92 7.18 -51.93 -0.37 0.55 16 40 H 0.07 1.30 7.82 -51.93 -0.41 0.89 16 41 H 0.04 0.63 7.93 -51.93 -0.41 0.22 16 42 H 0.07 1.38 4.07 -51.93 -0.21 1.16 16 LS Contribution 291.86 15.07 4.40 4.40 Total: -1.00 -27.06 291.86 -8.57 -35.64 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.76 Total: 2.36 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 0.23 Total: -12.85 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -1.42 Total: -45.84 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.06 -8.57 -35.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233866352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.111 kcal (2) G-P(sol) polarization free energy of solvation -27.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds