Wall clock time and date at job start Mon Mar 30 2020 03:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47031 * 2 1 4 4 H 1.09003 * 109.47127 * 57.00739 * 3 2 1 5 5 C 1.50700 * 109.47163 * 177.00245 * 3 2 1 6 6 H 1.07997 * 120.00158 * 114.54698 * 5 3 2 7 7 C 1.37887 * 120.00079 * 294.54935 * 5 3 2 8 8 N 1.31517 * 119.99651 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99877 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47260 * 89.99884 * 9 7 5 11 11 H 1.48497 * 109.47055 * 210.00061 * 9 7 5 12 12 H 1.48500 * 109.47215 * 329.99553 * 9 7 5 13 13 N 1.46891 * 109.47292 * 297.00476 * 3 2 1 14 14 C 1.40084 * 111.00014 * 316.64184 * 13 3 2 15 15 C 1.54511 * 111.51295 * 188.14745 * 14 13 3 16 16 C 1.50739 * 108.94662 * 283.99242 * 15 14 13 17 17 N 1.48073 * 112.93619 * 92.64780 * 16 15 14 18 18 C 1.46903 * 110.99676 * 192.21964 * 17 16 15 19 19 C 1.47737 * 113.78966 * 318.28410 * 17 16 15 20 20 C 1.47686 * 111.00536 * 85.28432 * 13 3 2 21 21 H 1.08998 * 109.73836 * 271.64702 * 20 13 3 22 22 C 1.53005 * 109.73323 * 32.33629 * 20 13 3 23 23 H 1.09004 * 109.47316 * 307.61109 * 1 2 3 24 24 H 1.09002 * 109.46790 * 187.61829 * 1 2 3 25 25 H 1.08994 * 109.47300 * 67.61381 * 1 2 3 26 26 H 1.09001 * 109.47161 * 120.00253 * 2 1 3 27 27 H 1.08998 * 109.47193 * 240.00339 * 2 1 3 28 28 H 0.96996 * 119.99450 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.07435 * 308.67454 * 14 13 3 30 30 H 1.09004 * 109.07194 * 67.69490 * 14 13 3 31 31 H 1.09000 * 109.56092 * 43.83399 * 15 14 13 32 32 H 1.09002 * 109.56169 * 164.15346 * 15 14 13 33 33 H 1.09003 * 108.79387 * 213.54081 * 16 15 14 34 34 H 1.08997 * 108.79049 * 331.75885 * 16 15 14 35 35 H 1.09004 * 109.47387 * 63.95771 * 18 17 16 36 36 H 1.09004 * 109.46930 * 183.95213 * 18 17 16 37 37 H 1.08998 * 109.47710 * 303.95160 * 18 17 16 38 38 H 1.09004 * 108.99379 * 79.50148 * 19 17 16 39 39 H 1.08999 * 108.99335 * 198.25009 * 19 17 16 40 40 H 1.09002 * 109.47099 * 51.80818 * 22 20 13 41 41 H 1.09001 * 109.46922 * 171.80160 * 22 20 13 42 42 H 1.08994 * 109.47401 * 291.80373 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6334 1.9716 0.8620 5 6 3.5451 1.4432 0.0743 6 1 4.1266 1.8171 -0.7554 7 6 4.1800 0.9664 1.2016 8 7 3.4718 0.5115 2.2122 9 14 6.0456 0.9679 1.2940 10 1 6.5113 2.2516 1.8773 11 1 6.4998 -0.1581 2.1490 12 1 6.6089 0.8113 -0.0711 13 7 1.6103 2.1138 -1.2339 14 6 1.7832 1.2793 -2.3457 15 6 1.5282 2.0370 -3.6679 16 6 0.0425 2.2126 -3.8528 17 7 -0.4589 3.4955 -3.3095 18 6 -1.9266 3.5026 -3.2462 19 6 0.1290 3.8604 -2.0042 20 6 0.2494 2.6687 -1.0883 21 1 -0.4872 1.9149 -1.3662 22 6 0.0217 3.1052 0.3603 23 1 -0.3634 0.6272 0.8141 24 1 -0.3633 -1.0186 0.1362 25 1 -0.3633 0.3914 -0.9502 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.9185 0.1757 3.0051 29 1 2.8028 0.8941 -2.3468 30 1 1.0870 0.4435 -2.2754 31 1 2.0089 3.0144 -3.6270 32 1 1.9343 1.4636 -4.5013 33 1 -0.1865 2.1688 -4.9176 34 1 -0.4729 1.3935 -3.3512 35 1 -2.2638 2.7383 -2.5459 36 1 -2.2710 4.4806 -2.9101 37 1 -2.3340 3.2941 -4.2354 38 1 1.1202 4.2837 -2.1674 39 1 -0.5018 4.6112 -1.5284 40 1 0.8370 3.7563 0.6760 41 1 -0.9228 3.6444 0.4331 42 1 -0.0112 2.2262 1.0038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233866352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:56 Heat of formation + Delta-G solvation = 9.728915 kcal Electronic energy + Delta-G solvation = -19412.544394 eV Core-core repulsion = 16813.578108 eV Total energy + Delta-G solvation = -2598.966286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30818 -37.79289 -34.73524 -34.41282 -32.88103 -30.82909 -28.75569 -27.84758 -26.51859 -24.87727 -23.89129 -22.49922 -20.67383 -20.17077 -18.37743 -17.34090 -16.86798 -16.45758 -16.35865 -15.85885 -15.43202 -14.79020 -14.59256 -14.03960 -13.66053 -13.53735 -13.36017 -13.29476 -13.12728 -12.88449 -12.74052 -12.58764 -12.49149 -12.33745 -12.23532 -12.10986 -11.86478 -11.78171 -11.51399 -11.31258 -11.01517 -10.75319 -10.29838 -9.16059 -8.52230 -8.06467 -6.14034 1.41323 1.42663 1.52018 2.45023 3.04674 3.22135 3.38879 3.99112 4.04624 4.09775 4.20579 4.25840 4.42461 4.49770 4.55403 4.61089 4.63846 4.66163 4.75832 4.86446 4.86649 4.92662 4.98466 5.04828 5.08404 5.13391 5.15828 5.17560 5.32893 5.42328 5.48022 5.50908 5.66357 5.82579 5.84056 6.16967 6.25702 6.36232 6.74164 6.97411 7.09057 7.54004 8.99356 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.007812 C = 0.007349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.178041 B = 3583.510956 C = 3808.884485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.213 3.787 4 H 0.041 0.959 5 C -0.509 4.509 6 H 0.047 0.953 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.950 3.050 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.546 5.546 14 C 0.082 3.918 15 C -0.116 4.116 16 C 0.066 3.934 17 N -0.557 5.557 18 C 0.027 3.973 19 C 0.070 3.930 20 C 0.064 3.936 21 H 0.042 0.958 22 C -0.145 4.145 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.259 0.741 29 H 0.048 0.952 30 H 0.009 0.991 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.020 0.980 35 H 0.017 0.983 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 3.537 -9.072 13.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.107 3.893 4 H 0.058 0.942 5 C -0.548 4.548 6 H 0.065 0.935 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.270 5.270 14 C -0.048 4.048 15 C -0.154 4.154 16 C -0.061 4.061 17 N -0.281 5.281 18 C -0.121 4.121 19 C -0.058 4.058 20 C -0.045 4.045 21 H 0.060 0.940 22 C -0.203 4.203 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.056 4.186 -9.321 13.654 hybrid contribution 0.563 -1.655 1.215 2.129 sum -8.493 2.531 -8.106 12.010 Atomic orbital electron populations 1.22081 0.96856 1.00482 1.00776 1.21986 0.94035 1.01633 1.00084 1.19340 0.93496 0.88666 0.87813 0.94157 1.21469 0.92857 1.39466 1.01026 0.93463 1.25588 1.01916 0.95514 0.95533 1.70026 1.36271 1.43531 1.06255 0.85676 0.81417 0.77431 0.77786 1.20422 1.21165 1.19760 1.59311 1.22662 1.40871 1.04160 1.20951 0.99550 0.93439 0.90870 1.21587 0.95957 1.01291 0.96587 1.21818 0.94996 0.89242 1.00028 1.62187 1.07450 1.32313 1.26160 1.22411 0.86615 1.01444 1.01602 1.22005 1.00509 0.96029 0.87279 1.21949 0.89407 0.96912 0.96199 0.94019 1.22085 1.01287 1.01301 0.95621 0.93032 0.93626 0.92892 0.92966 0.95047 0.93227 0.93323 0.97283 0.91342 0.89548 0.89647 0.96204 0.96458 0.90390 0.90463 0.91502 0.90068 0.93268 0.90680 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.61 8.37 71.98 0.60 -5.00 16 2 C -0.14 -6.48 4.74 30.59 0.15 -6.33 16 3 C 0.21 10.43 1.59 44.17 0.07 10.50 16 4 H 0.04 2.15 4.74 -2.39 -0.01 2.13 16 5 C -0.51 -28.12 7.97 25.60 0.20 -27.92 16 6 H 0.05 2.66 7.59 -2.91 -0.02 2.64 16 7 C 0.01 0.70 5.31 84.66 0.45 1.15 16 8 N -0.92 -52.94 11.72 21.45 0.25 -52.69 16 9 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.55 -22.56 3.79 -866.14 -3.29 -25.85 16 14 C 0.08 3.14 3.70 88.05 0.33 3.46 16 15 C -0.12 -3.54 5.68 30.37 0.17 -3.36 16 16 C 0.07 1.78 5.00 85.34 0.43 2.21 16 17 N -0.56 -14.92 4.99 -925.82 -4.62 -19.54 16 18 C 0.03 0.58 9.36 127.69 1.20 1.78 16 19 C 0.07 2.11 4.83 85.42 0.41 2.52 16 20 C 0.06 2.20 1.46 44.04 0.06 2.27 16 21 H 0.04 1.45 3.76 -2.39 -0.01 1.44 16 22 C -0.15 -5.03 7.51 71.98 0.54 -4.49 16 23 H 0.05 1.98 5.71 -2.38 -0.01 1.97 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.05 1.91 4.20 -2.39 -0.01 1.90 16 26 H 0.05 2.81 6.46 -2.39 -0.02 2.79 16 27 H 0.03 1.47 6.32 -2.39 -0.02 1.46 16 28 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.05 2.12 7.08 -2.39 -0.02 2.10 16 30 H 0.01 0.36 4.76 -2.39 -0.01 0.35 16 31 H 0.07 2.27 7.19 -2.39 -0.02 2.25 16 32 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.02 0.57 6.41 -2.39 -0.02 0.55 16 35 H 0.02 0.38 7.73 -2.38 -0.02 0.36 16 36 H 0.08 1.46 7.97 -2.38 -0.02 1.44 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 2.30 7.20 -2.38 -0.02 2.29 16 39 H 0.08 2.15 7.18 -2.39 -0.02 2.13 16 40 H 0.05 1.87 7.82 -2.39 -0.02 1.85 16 41 H 0.07 2.07 7.93 -2.39 -0.02 2.05 16 42 H 0.05 2.01 4.07 -2.39 -0.01 2.00 16 Total: -1.00 -58.81 291.86 -0.03 -58.83 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 1.00 Total: 15.99 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 4.61 Total: -23.23 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -7.66 Total: -98.08 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -58.81 -0.03 -58.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233866352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.561 kcal (2) G-P(sol) polarization free energy of solvation -58.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds