Wall clock time and date at job start Mon Mar 30 2020 03:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 H 1.09008 * 109.46975 * 183.52049 * 3 2 1 5 5 C 1.50696 * 109.47226 * 63.51977 * 3 2 1 6 6 H 1.08002 * 119.99703 * 245.38082 * 5 3 2 7 7 C 1.37871 * 119.99930 * 65.37296 * 5 3 2 8 8 N 1.31516 * 120.00143 * 194.05525 * 7 5 3 9 9 Si 1.86802 * 120.00229 * 14.05880 * 7 5 3 10 10 H 1.48501 * 109.47222 * 94.28816 * 9 7 5 11 11 H 1.48494 * 109.47186 * 214.28717 * 9 7 5 12 12 H 1.48498 * 109.46700 * 334.29091 * 9 7 5 13 13 N 1.46899 * 109.47246 * 303.51786 * 3 2 1 14 14 C 1.46898 * 111.00060 * 175.37189 * 13 3 2 15 15 C 1.46899 * 111.00008 * 299.32457 * 13 3 2 16 16 C 1.53004 * 109.47301 * 163.58878 * 15 13 3 17 17 H 1.08998 * 109.45009 * 298.02582 * 16 15 13 18 18 C 1.53038 * 109.46438 * 178.05781 * 16 15 13 19 19 C 1.53123 * 109.28021 * 180.80571 * 18 16 15 20 20 C 1.53120 * 109.15961 * 57.64812 * 19 18 16 21 21 C 1.53035 * 109.28032 * 302.34707 * 20 19 18 22 22 N 1.46843 * 109.46129 * 58.00160 * 16 15 13 23 23 H 1.08998 * 109.47025 * 304.77998 * 1 2 3 24 24 H 1.09002 * 109.47681 * 64.78454 * 1 2 3 25 25 H 1.09006 * 109.47019 * 184.78086 * 1 2 3 26 26 H 1.09004 * 109.46878 * 240.00025 * 2 1 3 27 27 H 1.09000 * 109.47597 * 120.00130 * 2 1 3 28 28 H 0.96998 * 120.00157 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.47059 * 191.90988 * 14 13 3 30 30 H 1.08998 * 109.47103 * 311.90428 * 14 13 3 31 31 H 1.08997 * 109.47587 * 71.90993 * 14 13 3 32 32 H 1.08996 * 109.47488 * 43.58987 * 15 13 3 33 33 H 1.08999 * 109.47201 * 283.58851 * 15 13 3 34 34 H 1.08994 * 109.50544 * 60.86256 * 18 16 15 35 35 H 1.09000 * 109.53392 * 300.76436 * 18 16 15 36 36 H 1.09005 * 109.51551 * 297.74655 * 19 18 16 37 37 H 1.08990 * 109.57496 * 177.58559 * 19 18 16 38 38 H 1.09001 * 109.50240 * 182.40870 * 20 19 18 39 39 H 1.08998 * 109.50254 * 62.29245 * 20 19 18 40 40 H 1.08996 * 109.46530 * 299.16628 * 21 20 19 41 41 H 1.09002 * 109.46495 * 179.19404 * 21 20 19 42 42 H 1.00897 * 111.00201 * 57.66517 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1282 1.4432 -0.0631 5 6 1.6101 2.1273 1.2717 6 1 0.9155 2.9534 1.2320 7 6 2.1033 1.6991 2.4859 8 7 1.5350 2.0960 3.6035 9 14 3.5790 0.5552 2.5436 10 1 4.8195 1.3553 2.7058 11 1 3.4379 -0.3773 3.6906 12 1 3.6528 -0.2216 1.2802 13 7 1.4821 2.1591 -1.1547 14 6 1.8620 3.5779 -1.1275 15 6 1.8944 1.5278 -2.4154 16 6 0.9954 2.0214 -3.5508 17 1 -0.0352 1.7280 -3.3515 18 6 1.4556 1.4010 -4.8720 19 6 0.5659 1.9133 -6.0081 20 6 0.6332 3.4425 -6.0486 21 6 0.1968 4.0036 -4.6934 22 7 1.0791 3.4847 -3.6403 23 1 -0.3633 0.5862 0.8441 24 1 -0.3634 0.4378 -0.9297 25 1 -0.3633 -1.0241 0.0857 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8823 1.7951 4.4577 29 1 1.2726 4.1260 -1.8626 30 1 1.6739 3.9854 -0.1342 31 1 2.9212 3.6751 -1.3655 32 1 1.8052 0.4452 -2.3259 33 1 2.9300 1.7904 -2.6316 34 1 1.3786 0.3155 -4.8107 35 1 2.4908 1.6820 -5.0655 36 1 -0.4632 1.5984 -5.8350 37 1 0.9162 1.5080 -6.9573 38 1 -0.0313 3.8155 -6.8279 39 1 1.6554 3.7563 -6.2603 40 1 -0.8301 3.7009 -4.4886 41 1 0.2573 5.0917 -4.7142 42 1 2.0314 3.7842 -3.7864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234029135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:56 Heat of formation + Delta-G solvation = 5.858986 kcal Electronic energy + Delta-G solvation = -18681.905708 eV Core-core repulsion = 16082.771609 eV Total energy + Delta-G solvation = -2599.134099 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.16713 -36.90187 -33.15919 -31.73285 -31.43912 -30.81873 -27.18648 -26.25345 -23.85245 -23.19574 -22.18929 -21.05935 -20.29850 -18.76834 -16.39327 -15.59895 -15.46636 -14.90267 -14.58799 -14.11445 -14.06412 -13.84372 -13.28564 -12.95031 -12.49659 -12.41690 -12.08281 -12.03548 -11.77106 -11.34698 -11.14488 -10.96204 -10.83291 -10.70871 -10.60753 -10.49355 -10.44123 -10.05657 -9.93474 -9.79833 -9.26103 -8.84506 -8.38069 -7.88355 -7.02629 -6.00642 -3.92699 3.31501 3.41177 3.43934 4.39203 4.48845 4.65880 4.78748 4.94488 5.01055 5.29739 5.35677 5.40920 5.52030 5.55155 5.72350 5.80728 5.92675 5.94165 5.98003 6.06447 6.09373 6.19098 6.28044 6.34155 6.42807 6.49203 6.66123 6.78376 6.89436 7.11315 7.20478 7.22735 7.30071 7.39261 7.57969 7.60981 7.80978 8.17143 8.35896 8.80479 9.11802 9.65943 11.12242 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039541 B = 0.006299 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.948105 B = 4444.276566 C = 4641.636790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 C 0.185 3.815 4 H -0.014 1.014 5 C -0.497 4.497 6 H 0.082 0.918 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.859 3.141 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.256 1.256 13 N -0.511 5.511 14 C 0.018 3.982 15 C 0.055 3.945 16 C 0.096 3.904 17 H 0.086 0.914 18 C -0.153 4.153 19 C -0.117 4.117 20 C -0.157 4.157 21 C 0.054 3.946 22 N -0.661 5.661 23 H 0.069 0.931 24 H 0.049 0.951 25 H 0.018 0.982 26 H 0.025 0.975 27 H 0.050 0.950 28 H 0.261 0.739 29 H 0.098 0.902 30 H 0.071 0.929 31 H -0.008 1.008 32 H 0.074 0.926 33 H 0.016 0.984 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 -0.165 -17.575 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 C 0.077 3.923 4 H 0.004 0.996 5 C -0.535 4.535 6 H 0.100 0.900 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.687 3.313 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.181 1.181 13 N -0.234 5.234 14 C -0.130 4.130 15 C -0.074 4.074 16 C -0.014 4.014 17 H 0.104 0.896 18 C -0.193 4.193 19 C -0.155 4.155 20 C -0.197 4.197 21 C -0.076 4.076 22 N -0.290 5.290 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.011 0.989 32 H 0.092 0.908 33 H 0.034 0.966 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.390 -0.095 -16.805 16.862 hybrid contribution 2.398 -0.977 -0.690 2.679 sum 1.008 -1.072 -17.495 17.556 Atomic orbital electron populations 1.21460 0.95692 0.98126 1.02788 1.21900 0.97066 0.97991 0.98246 1.19673 0.91501 0.90973 0.90131 0.99606 1.20887 1.27141 1.17412 0.88045 0.89996 1.24855 0.96512 0.95784 0.95641 1.69959 1.39597 1.46249 0.97575 0.87261 0.84363 0.81574 0.78097 1.21043 1.21450 1.18082 1.61804 1.59106 1.02542 0.99982 1.22833 0.96430 0.89865 1.03852 1.22204 0.94834 0.99324 0.91042 1.21638 1.01054 0.86606 0.92122 0.89554 1.22275 0.99322 1.01181 0.96474 1.21527 1.00231 0.95514 0.98202 1.22277 1.01451 0.96288 0.99672 1.22060 0.98133 0.99241 0.88186 1.61040 1.12436 1.10383 1.45101 0.91150 0.93205 0.96270 0.95646 0.93103 0.92881 0.88431 0.91044 0.98913 0.90784 0.96582 0.91545 0.92390 0.91904 0.92532 0.91979 0.92392 0.90967 0.91089 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.51 37.15 0.35 -2.25 16 2 C -0.11 -2.53 4.60 -26.73 -0.12 -2.66 16 3 C 0.18 4.40 1.30 -68.87 -0.09 4.31 16 4 H -0.01 -0.34 6.76 -51.92 -0.35 -0.69 16 5 C -0.50 -13.76 6.89 -34.44 -0.24 -14.00 16 6 H 0.08 2.50 6.91 -52.49 -0.36 2.13 16 7 C 0.07 2.11 5.36 -17.82 -0.10 2.01 16 8 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 9 Si 0.86 21.53 25.78 -169.99 -4.38 17.15 16 10 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.26 -6.11 5.42 56.52 0.31 -5.80 16 13 N -0.51 -10.54 3.75 -236.28 -0.89 -11.42 16 14 C 0.02 0.37 8.63 60.06 0.52 0.89 16 15 C 0.06 0.94 4.67 -3.82 -0.02 0.92 16 16 C 0.10 1.33 2.70 -67.72 -0.18 1.15 16 17 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 18 C -0.15 -1.73 5.36 -26.65 -0.14 -1.88 16 19 C -0.12 -1.16 6.00 -26.61 -0.16 -1.32 16 20 C -0.16 -1.48 6.08 -26.65 -0.16 -1.64 16 21 C 0.05 0.58 6.55 -3.83 -0.03 0.55 16 22 N -0.66 -8.65 3.09 -106.76 -0.33 -8.98 16 23 H 0.07 1.69 7.18 -51.93 -0.37 1.32 16 24 H 0.05 0.99 7.68 -51.93 -0.40 0.60 16 25 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.02 0.50 6.28 -51.93 -0.33 0.18 16 27 H 0.05 1.20 4.93 -51.93 -0.26 0.94 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.10 1.75 5.24 -51.92 -0.27 1.48 16 30 H 0.07 1.64 5.95 -51.93 -0.31 1.33 16 31 H -0.01 -0.15 7.94 -51.93 -0.41 -0.56 16 32 H 0.07 1.27 5.71 -51.93 -0.30 0.97 16 33 H 0.02 0.27 7.91 -51.93 -0.41 -0.14 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.33 4.22 8.53 -39.29 -0.34 3.88 16 LS Contribution 304.62 15.07 4.59 4.59 Total: -1.00 -29.07 304.62 -8.16 -37.23 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.56 Total: 1.85 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -0.36 Total: -13.91 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.44 Total: -46.90 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.38 Total: 17.15 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.07 -8.16 -37.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234029135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.086 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds