Wall clock time and date at job start Mon Mar 30 2020 03:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 H 1.09008 * 109.46975 * 183.52049 * 3 2 1 5 5 C 1.50696 * 109.47226 * 63.51977 * 3 2 1 6 6 H 1.08002 * 119.99703 * 245.38082 * 5 3 2 7 7 C 1.37871 * 119.99930 * 65.37296 * 5 3 2 8 8 N 1.31516 * 120.00143 * 194.05525 * 7 5 3 9 9 Si 1.86802 * 120.00229 * 14.05880 * 7 5 3 10 10 H 1.48501 * 109.47222 * 94.28816 * 9 7 5 11 11 H 1.48494 * 109.47186 * 214.28717 * 9 7 5 12 12 H 1.48498 * 109.46700 * 334.29091 * 9 7 5 13 13 N 1.46899 * 109.47246 * 303.51786 * 3 2 1 14 14 C 1.46898 * 111.00060 * 175.37189 * 13 3 2 15 15 C 1.46899 * 111.00008 * 299.32457 * 13 3 2 16 16 C 1.53004 * 109.47301 * 163.58878 * 15 13 3 17 17 H 1.08998 * 109.45009 * 298.02582 * 16 15 13 18 18 C 1.53038 * 109.46438 * 178.05781 * 16 15 13 19 19 C 1.53123 * 109.28021 * 180.80571 * 18 16 15 20 20 C 1.53120 * 109.15961 * 57.64812 * 19 18 16 21 21 C 1.53035 * 109.28032 * 302.34707 * 20 19 18 22 22 N 1.46843 * 109.46129 * 58.00160 * 16 15 13 23 23 H 1.08998 * 109.47025 * 304.77998 * 1 2 3 24 24 H 1.09002 * 109.47681 * 64.78454 * 1 2 3 25 25 H 1.09006 * 109.47019 * 184.78086 * 1 2 3 26 26 H 1.09004 * 109.46878 * 240.00025 * 2 1 3 27 27 H 1.09000 * 109.47597 * 120.00130 * 2 1 3 28 28 H 0.96998 * 120.00157 * 180.02562 * 8 7 5 29 29 H 1.09007 * 109.47059 * 191.90988 * 14 13 3 30 30 H 1.08998 * 109.47103 * 311.90428 * 14 13 3 31 31 H 1.08997 * 109.47587 * 71.90993 * 14 13 3 32 32 H 1.08996 * 109.47488 * 43.58987 * 15 13 3 33 33 H 1.08999 * 109.47201 * 283.58851 * 15 13 3 34 34 H 1.08994 * 109.50544 * 60.86256 * 18 16 15 35 35 H 1.09000 * 109.53392 * 300.76436 * 18 16 15 36 36 H 1.09005 * 109.51551 * 297.74655 * 19 18 16 37 37 H 1.08990 * 109.57496 * 177.58559 * 19 18 16 38 38 H 1.09001 * 109.50240 * 182.40870 * 20 19 18 39 39 H 1.08998 * 109.50254 * 62.29245 * 20 19 18 40 40 H 1.08996 * 109.46530 * 299.16628 * 21 20 19 41 41 H 1.09002 * 109.46495 * 179.19404 * 21 20 19 42 42 H 1.00897 * 111.00201 * 57.66517 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1282 1.4432 -0.0631 5 6 1.6101 2.1273 1.2717 6 1 0.9155 2.9534 1.2320 7 6 2.1033 1.6991 2.4859 8 7 1.5350 2.0960 3.6035 9 14 3.5790 0.5552 2.5436 10 1 4.8195 1.3553 2.7058 11 1 3.4379 -0.3773 3.6906 12 1 3.6528 -0.2216 1.2802 13 7 1.4821 2.1591 -1.1547 14 6 1.8620 3.5779 -1.1275 15 6 1.8944 1.5278 -2.4154 16 6 0.9954 2.0214 -3.5508 17 1 -0.0352 1.7280 -3.3515 18 6 1.4556 1.4010 -4.8720 19 6 0.5659 1.9133 -6.0081 20 6 0.6332 3.4425 -6.0486 21 6 0.1968 4.0036 -4.6934 22 7 1.0791 3.4847 -3.6403 23 1 -0.3633 0.5862 0.8441 24 1 -0.3634 0.4378 -0.9297 25 1 -0.3633 -1.0241 0.0857 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8823 1.7951 4.4577 29 1 1.2726 4.1260 -1.8626 30 1 1.6739 3.9854 -0.1342 31 1 2.9212 3.6751 -1.3655 32 1 1.8052 0.4452 -2.3259 33 1 2.9300 1.7904 -2.6316 34 1 1.3786 0.3155 -4.8107 35 1 2.4908 1.6820 -5.0655 36 1 -0.4632 1.5984 -5.8350 37 1 0.9162 1.5080 -6.9573 38 1 -0.0313 3.8155 -6.8279 39 1 1.6554 3.7563 -6.2603 40 1 -0.8301 3.7009 -4.4886 41 1 0.2573 5.0917 -4.7142 42 1 2.0314 3.7842 -3.7864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234029135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:56 Heat of formation + Delta-G solvation = -13.027702 kcal Electronic energy + Delta-G solvation = -18682.724697 eV Core-core repulsion = 16082.771609 eV Total energy + Delta-G solvation = -2599.953087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29522 -38.44420 -34.89310 -33.49338 -32.48998 -32.13854 -28.91619 -27.81325 -25.53887 -24.13006 -23.87105 -22.31051 -21.23405 -20.53055 -18.46315 -17.16574 -16.64078 -16.10539 -15.98780 -15.49124 -15.34599 -15.15731 -14.77169 -14.59102 -14.17545 -13.75630 -13.65703 -13.13192 -13.05938 -12.91492 -12.69930 -12.41058 -12.25317 -12.16781 -11.95392 -11.88591 -11.84165 -11.64153 -11.44599 -11.19233 -11.12042 -10.82529 -10.52835 -9.02221 -8.61626 -8.22836 -6.18345 1.31906 1.36173 1.45258 2.37922 3.11056 3.34981 3.44745 3.94160 4.00950 4.14500 4.30559 4.33995 4.45336 4.47560 4.56014 4.57640 4.69856 4.72566 4.81849 4.90860 4.97157 5.01747 5.09387 5.14889 5.16362 5.17266 5.23766 5.28856 5.33324 5.41342 5.45031 5.47429 5.71572 5.78265 5.86813 6.17376 6.28594 6.57710 6.62047 6.87254 6.92093 7.44057 8.93917 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.039541 B = 0.006299 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.948105 B = 4444.276566 C = 4641.636790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.114 4.114 3 C 0.187 3.813 4 H -0.023 1.023 5 C -0.489 4.489 6 H 0.038 0.962 7 C 0.017 3.983 8 N -0.945 5.945 9 Si 0.920 3.080 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.232 1.232 13 N -0.520 5.520 14 C 0.029 3.971 15 C 0.056 3.944 16 C 0.105 3.895 17 H 0.072 0.928 18 C -0.145 4.145 19 C -0.115 4.115 20 C -0.150 4.150 21 C 0.055 3.945 22 N -0.679 5.679 23 H 0.029 0.971 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.262 0.738 29 H 0.121 0.879 30 H 0.030 0.970 31 H -0.003 1.003 32 H 0.076 0.924 33 H 0.020 0.980 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.387 -1.461 -20.445 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.152 4.152 3 C 0.079 3.921 4 H -0.006 1.006 5 C -0.528 4.528 6 H 0.056 0.944 7 C -0.180 4.180 8 N -0.586 5.586 9 Si 0.745 3.255 10 H -0.210 1.210 11 H -0.212 1.212 12 H -0.155 1.155 13 N -0.244 5.244 14 C -0.119 4.119 15 C -0.072 4.072 16 C -0.005 4.005 17 H 0.090 0.910 18 C -0.185 4.185 19 C -0.153 4.153 20 C -0.190 4.190 21 C -0.074 4.074 22 N -0.308 5.308 23 H 0.049 0.951 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.138 0.862 30 H 0.049 0.951 31 H 0.016 0.984 32 H 0.095 0.905 33 H 0.038 0.962 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.590 -1.393 -19.714 19.772 hybrid contribution 2.067 -0.474 0.155 2.127 sum 1.477 -1.867 -19.559 19.703 Atomic orbital electron populations 1.21326 0.95072 0.99156 1.01458 1.21853 0.97615 0.96643 0.99113 1.19543 0.90877 0.92055 0.89629 1.00584 1.21044 1.25513 1.16046 0.90164 0.94384 1.25627 0.99246 0.97887 0.95195 1.70101 1.41572 1.48602 0.98293 0.86276 0.80356 0.79771 0.79086 1.20978 1.21240 1.15534 1.61775 1.59230 1.02613 1.00736 1.22768 0.97140 0.89931 1.02095 1.22300 0.95752 0.99239 0.89942 1.21427 0.99428 0.87318 0.92323 0.91006 1.22181 0.99741 1.01266 0.95302 1.21523 0.99808 0.95786 0.98153 1.22200 1.01968 0.95892 0.98907 1.22066 0.97137 0.99753 0.88460 1.60872 1.13077 1.10041 1.46781 0.95143 0.92280 0.93534 0.92460 0.94351 0.92885 0.86183 0.95067 0.98433 0.90533 0.96193 0.91107 0.91999 0.92107 0.91111 0.90567 0.91977 0.91787 0.90205 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 9.51 71.98 0.68 -3.94 16 2 C -0.11 -4.86 4.60 30.59 0.14 -4.72 16 3 C 0.19 8.84 1.30 44.17 0.06 8.90 16 4 H -0.02 -1.14 6.76 -2.38 -0.02 -1.15 16 5 C -0.49 -28.01 6.89 25.60 0.18 -27.83 16 6 H 0.04 2.46 6.91 -2.91 -0.02 2.44 16 7 C 0.02 1.02 5.36 84.65 0.45 1.48 16 8 N -0.94 -59.71 13.96 21.45 0.30 -59.41 16 9 Si 0.92 44.61 25.78 68.60 1.77 46.38 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.23 -10.28 5.42 99.48 0.54 -9.74 16 13 N -0.52 -21.17 3.75 -901.47 -3.38 -24.55 16 14 C 0.03 1.16 8.63 127.69 1.10 2.26 16 15 C 0.06 1.78 4.67 86.30 0.40 2.19 16 16 C 0.11 2.69 2.70 44.94 0.12 2.81 16 17 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 18 C -0.15 -2.84 5.36 30.65 0.16 -2.68 16 19 C -0.12 -1.90 6.00 30.68 0.18 -1.71 16 20 C -0.15 -2.35 6.08 30.65 0.19 -2.16 16 21 C 0.06 1.07 6.55 86.32 0.57 1.63 16 22 N -0.68 -16.44 3.09 -491.67 -1.52 -17.96 16 23 H 0.03 1.46 7.18 -2.39 -0.02 1.45 16 24 H 0.06 2.28 7.68 -2.39 -0.02 2.26 16 25 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.06 2.09 6.28 -2.38 -0.01 2.07 16 27 H 0.04 1.72 4.93 -2.39 -0.01 1.71 16 28 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.12 4.25 5.24 -2.38 -0.01 4.24 16 30 H 0.03 1.48 5.95 -2.39 -0.01 1.47 16 31 H 0.00 -0.11 7.94 -2.39 -0.02 -0.13 16 32 H 0.08 2.38 5.71 -2.39 -0.01 2.37 16 33 H 0.02 0.63 7.91 -2.39 -0.02 0.61 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.34 7.77 8.53 -89.70 -0.77 7.00 16 Total: -1.00 -64.49 304.62 1.45 -63.04 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.05 Total: 16.29 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 4.24 Total: -23.78 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -4.60 Total: -101.93 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.77 Total: 46.38 kcal Total: -64.49 1.45 -63.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234029135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.014 kcal (2) G-P(sol) polarization free energy of solvation -64.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds