Wall clock time and date at job start Mon Mar 30 2020 03:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46786 * 2 1 4 4 H 1.09005 * 109.47104 * 54.37218 * 3 2 1 5 5 C 1.50693 * 109.47091 * 294.37071 * 3 2 1 6 6 H 1.08003 * 119.99807 * 246.20295 * 5 3 2 7 7 C 1.37879 * 120.00543 * 66.20089 * 5 3 2 8 8 N 1.31520 * 119.99375 * 27.63799 * 7 5 3 9 9 Si 1.86796 * 120.00318 * 207.63882 * 7 5 3 10 10 H 1.48506 * 109.46796 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46977 * 299.99904 * 9 7 5 12 12 H 1.48497 * 109.47205 * 60.00147 * 9 7 5 13 13 N 1.46901 * 109.47025 * 174.36640 * 3 2 1 14 14 C 1.46904 * 110.99714 * 52.81061 * 13 3 2 15 15 C 1.52996 * 109.46881 * 167.47379 * 14 13 3 16 16 C 1.46892 * 111.00195 * 288.85225 * 13 3 2 17 17 C 1.52997 * 109.47123 * 278.78467 * 16 13 3 18 18 H 1.08996 * 109.88413 * 316.79500 * 17 16 13 19 19 C 1.54329 * 109.88747 * 195.59544 * 17 16 13 20 20 C 1.55144 * 103.01745 * 218.31243 * 19 17 16 21 21 C 1.54901 * 101.65405 * 35.65288 * 20 19 17 22 22 N 1.47445 * 109.88964 * 77.82999 * 17 16 13 23 23 H 1.09000 * 109.47693 * 308.85573 * 1 2 3 24 24 H 1.09003 * 109.47161 * 68.86432 * 1 2 3 25 25 H 1.09002 * 109.47112 * 188.85940 * 1 2 3 26 26 H 1.08991 * 109.47539 * 240.00279 * 2 1 3 27 27 H 1.09004 * 109.47058 * 119.99380 * 2 1 3 28 28 H 0.96995 * 120.00434 * 1.44880 * 8 7 5 29 29 H 1.09007 * 109.46371 * 287.46651 * 14 13 3 30 30 H 1.08998 * 109.47442 * 47.46441 * 14 13 3 31 31 H 1.09007 * 109.46705 * 186.94833 * 15 14 13 32 32 H 1.09007 * 109.47128 * 306.94202 * 15 14 13 33 33 H 1.08998 * 109.48009 * 66.94697 * 15 14 13 34 34 H 1.08998 * 109.47519 * 38.78689 * 16 13 3 35 35 H 1.09002 * 109.47550 * 158.78435 * 16 13 3 36 36 H 1.08993 * 110.70434 * 336.69467 * 19 17 16 37 37 H 1.09000 * 110.70209 * 99.92741 * 19 17 16 38 38 H 1.08997 * 110.98592 * 277.56206 * 20 19 17 39 39 H 1.08997 * 111.01977 * 153.76513 * 20 19 17 40 40 H 1.08998 * 110.37482 * 204.09965 * 21 20 19 41 41 H 1.09007 * 110.37234 * 81.75806 * 21 20 19 42 42 H 1.00900 * 110.99941 * 356.14915 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5966 1.9847 0.8353 5 6 1.6546 2.1116 -1.2942 6 1 2.4190 2.4096 -1.9964 7 6 0.3262 2.3431 -1.5818 8 7 -0.5393 2.5064 -0.6050 9 14 -0.2443 2.4248 -3.3586 10 1 -1.7064 2.6820 -3.3977 11 1 0.4707 3.5224 -4.0581 12 1 0.0489 1.1345 -4.0325 13 7 3.5026 1.4449 0.1360 14 6 4.1266 0.5814 -0.8755 15 6 5.6334 0.8446 -0.9112 16 6 3.9060 1.0453 1.4907 17 6 3.7937 2.2466 2.4315 18 1 4.1930 3.1367 1.9454 19 6 4.5676 1.9653 3.7368 20 6 3.6616 2.6010 4.8240 21 6 2.2476 2.3094 4.2627 22 7 2.3827 2.4658 2.7988 23 1 -0.3634 0.6447 0.8002 24 1 -0.3634 0.3706 -0.9586 25 1 -0.3633 -1.0154 0.1583 26 1 1.8934 -0.5137 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 -0.2396 2.4849 0.3172 29 1 3.9462 -0.4634 -0.6224 30 1 3.6966 0.7978 -1.8534 31 1 6.0782 0.2971 -1.7423 32 1 5.8128 1.9119 -1.0417 33 1 6.0827 0.5124 0.0246 34 1 3.2543 0.2458 1.8430 35 1 4.9372 0.6924 1.4736 36 1 4.6708 0.8927 3.9000 37 1 5.5442 2.4491 3.7176 38 1 3.8377 3.6740 4.9004 39 1 3.8072 2.1139 5.7881 40 1 1.5277 3.0271 4.6562 41 1 1.9439 1.2920 4.5092 42 1 1.7776 1.8238 2.3092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234029809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:45 Heat of formation + Delta-G solvation = 14.411396 kcal Electronic energy + Delta-G solvation = -19030.660209 eV Core-core repulsion = 16431.896970 eV Total energy + Delta-G solvation = -2598.763239 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.04422 -36.96104 -33.91758 -30.92122 -30.45865 -29.76728 -28.63626 -26.10311 -23.78077 -22.71808 -21.66812 -20.74012 -20.15322 -19.12944 -16.61990 -15.80652 -15.62095 -14.76948 -14.58486 -13.84210 -13.65157 -13.42746 -13.03982 -12.93135 -12.58385 -12.39893 -11.72051 -11.64324 -11.49695 -11.15566 -11.11078 -10.97107 -10.80355 -10.76569 -10.56042 -10.44121 -10.29864 -10.06118 -10.01093 -9.89925 -9.50823 -8.85967 -7.90088 -7.68380 -7.15821 -6.31543 -3.84030 3.48093 3.50298 3.68227 4.53590 4.59347 4.84400 4.92654 5.00445 5.30913 5.33338 5.53179 5.61291 5.70517 5.75578 5.81098 5.89103 5.92625 5.98911 6.01959 6.15559 6.17760 6.22278 6.27151 6.30403 6.36779 6.53666 6.67172 6.71155 6.80171 6.87241 7.06344 7.14057 7.40571 7.44782 7.60956 7.85231 8.01549 8.17475 8.49044 8.76064 8.99575 9.73738 11.02461 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023213 B = 0.008609 C = 0.007191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.942402 B = 3251.576900 C = 3892.645492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.146 4.146 3 C 0.195 3.805 4 H 0.056 0.944 5 C -0.598 4.598 6 H 0.055 0.945 7 C 0.036 3.964 8 N -0.887 5.887 9 Si 1.045 2.955 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.519 5.519 14 C 0.056 3.944 15 C -0.146 4.146 16 C 0.030 3.970 17 C 0.089 3.911 18 H 0.090 0.910 19 C -0.139 4.139 20 C -0.127 4.127 21 C 0.041 3.959 22 N -0.677 5.677 23 H 0.049 0.951 24 H 0.083 0.917 25 H 0.011 0.989 26 H 0.047 0.953 27 H 0.016 0.984 28 H 0.275 0.725 29 H 0.016 0.984 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.027 0.973 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.080 -3.779 6.668 11.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 C 0.087 3.913 4 H 0.073 0.927 5 C -0.636 4.636 6 H 0.073 0.927 7 C -0.171 4.171 8 N -0.522 5.522 9 Si 0.874 3.126 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.241 5.241 14 C -0.072 4.072 15 C -0.204 4.204 16 C -0.100 4.100 17 C -0.021 4.021 18 H 0.108 0.892 19 C -0.178 4.178 20 C -0.165 4.165 21 C -0.088 4.088 22 N -0.313 5.313 23 H 0.068 0.932 24 H 0.102 0.898 25 H 0.030 0.970 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.086 0.914 29 H 0.035 0.965 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.916 -2.375 5.624 9.226 hybrid contribution 1.178 -2.186 1.179 2.748 sum 8.094 -4.561 6.803 11.515 Atomic orbital electron populations 1.22013 0.95432 0.97432 1.04495 1.22435 0.97116 1.01314 0.97697 1.19771 0.81614 0.90631 0.99253 0.92666 1.21612 0.94183 1.44188 1.03583 0.92694 1.25458 0.93408 0.93428 1.04801 1.70842 1.38692 1.41361 1.01315 0.83930 0.76121 0.76535 0.76023 1.21001 1.21553 1.21611 1.62330 1.11376 1.50423 0.99985 1.21968 0.93506 0.93643 0.98126 1.21845 0.96592 1.02027 0.99895 1.22716 0.99762 0.95453 0.92025 1.22293 0.88343 0.98332 0.93166 0.89246 1.22866 0.99117 1.00340 0.95450 1.22659 0.95045 1.01186 0.97644 1.22845 0.97044 0.99029 0.89870 1.62282 1.06321 1.58473 1.04199 0.93185 0.89828 0.96976 0.93450 0.96559 0.91366 0.96541 0.89693 0.93406 0.92074 0.93959 0.95496 0.91706 0.91966 0.91140 0.90893 0.91578 0.90863 0.94914 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.21 37.16 0.31 -2.83 16 2 C -0.15 -3.28 4.54 -26.73 -0.12 -3.40 16 3 C 0.19 4.61 1.55 -68.86 -0.11 4.51 16 4 H 0.06 1.40 3.54 -51.93 -0.18 1.21 16 5 C -0.60 -16.11 7.70 -34.44 -0.27 -16.37 16 6 H 0.05 1.54 7.20 -52.48 -0.38 1.17 16 7 C 0.04 0.97 3.26 -17.82 -0.06 0.91 16 8 N -0.89 -25.00 11.47 55.43 0.64 -24.36 16 9 Si 1.05 24.56 29.90 -169.99 -5.08 19.47 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 13 N -0.52 -10.85 4.31 -228.04 -0.98 -11.84 16 14 C 0.06 1.07 4.47 -3.82 -0.02 1.06 16 15 C -0.15 -2.30 9.80 37.16 0.36 -1.94 16 16 C 0.03 0.54 4.21 -3.83 -0.02 0.52 16 17 C 0.09 1.52 3.64 -66.72 -0.24 1.28 16 18 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 19 C -0.14 -1.86 6.42 -24.90 -0.16 -2.02 16 20 C -0.13 -1.62 7.08 -24.59 -0.17 -1.79 16 21 C 0.04 0.62 7.57 -2.30 -0.02 0.60 16 22 N -0.68 -12.54 6.77 -103.81 -0.70 -13.24 16 23 H 0.05 1.18 6.62 -51.93 -0.34 0.84 16 24 H 0.08 2.13 5.28 -51.93 -0.27 1.86 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 27 H 0.02 0.34 6.36 -51.93 -0.33 0.01 16 28 H 0.27 7.79 5.85 -40.82 -0.24 7.55 16 29 H 0.02 0.31 7.08 -51.93 -0.37 -0.06 16 30 H 0.08 1.82 6.59 -51.93 -0.34 1.47 16 31 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.61 6.60 -51.93 -0.34 0.27 16 34 H 0.03 0.50 5.94 -51.93 -0.31 0.20 16 35 H 0.06 1.05 6.00 -51.93 -0.31 0.74 16 36 H 0.06 0.80 7.85 -51.93 -0.41 0.39 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.35 7.11 5.29 -39.29 -0.21 6.90 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -27.48 302.64 -9.08 -36.56 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.00 Total: 8.33 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -0.51 Total: -19.48 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -1.05 Total: -49.44 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.47 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.48 -9.08 -36.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234029809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.969 kcal (2) G-P(sol) polarization free energy of solvation -27.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds