Wall clock time and date at job start Mon Mar 30 2020 03:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46786 * 2 1 4 4 H 1.09005 * 109.47104 * 54.37218 * 3 2 1 5 5 C 1.50693 * 109.47091 * 294.37071 * 3 2 1 6 6 H 1.08003 * 119.99807 * 246.20295 * 5 3 2 7 7 C 1.37879 * 120.00543 * 66.20089 * 5 3 2 8 8 N 1.31520 * 119.99375 * 27.63799 * 7 5 3 9 9 Si 1.86796 * 120.00318 * 207.63882 * 7 5 3 10 10 H 1.48506 * 109.46796 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46977 * 299.99904 * 9 7 5 12 12 H 1.48497 * 109.47205 * 60.00147 * 9 7 5 13 13 N 1.46901 * 109.47025 * 174.36640 * 3 2 1 14 14 C 1.46904 * 110.99714 * 52.81061 * 13 3 2 15 15 C 1.52996 * 109.46881 * 167.47379 * 14 13 3 16 16 C 1.46892 * 111.00195 * 288.85225 * 13 3 2 17 17 C 1.52997 * 109.47123 * 278.78467 * 16 13 3 18 18 H 1.08996 * 109.88413 * 316.79500 * 17 16 13 19 19 C 1.54329 * 109.88747 * 195.59544 * 17 16 13 20 20 C 1.55144 * 103.01745 * 218.31243 * 19 17 16 21 21 C 1.54901 * 101.65405 * 35.65288 * 20 19 17 22 22 N 1.47445 * 109.88964 * 77.82999 * 17 16 13 23 23 H 1.09000 * 109.47693 * 308.85573 * 1 2 3 24 24 H 1.09003 * 109.47161 * 68.86432 * 1 2 3 25 25 H 1.09002 * 109.47112 * 188.85940 * 1 2 3 26 26 H 1.08991 * 109.47539 * 240.00279 * 2 1 3 27 27 H 1.09004 * 109.47058 * 119.99380 * 2 1 3 28 28 H 0.96995 * 120.00434 * 1.44880 * 8 7 5 29 29 H 1.09007 * 109.46371 * 287.46651 * 14 13 3 30 30 H 1.08998 * 109.47442 * 47.46441 * 14 13 3 31 31 H 1.09007 * 109.46705 * 186.94833 * 15 14 13 32 32 H 1.09007 * 109.47128 * 306.94202 * 15 14 13 33 33 H 1.08998 * 109.48009 * 66.94697 * 15 14 13 34 34 H 1.08998 * 109.47519 * 38.78689 * 16 13 3 35 35 H 1.09002 * 109.47550 * 158.78435 * 16 13 3 36 36 H 1.08993 * 110.70434 * 336.69467 * 19 17 16 37 37 H 1.09000 * 110.70209 * 99.92741 * 19 17 16 38 38 H 1.08997 * 110.98592 * 277.56206 * 20 19 17 39 39 H 1.08997 * 111.01977 * 153.76513 * 20 19 17 40 40 H 1.08998 * 110.37482 * 204.09965 * 21 20 19 41 41 H 1.09007 * 110.37234 * 81.75806 * 21 20 19 42 42 H 1.00900 * 110.99941 * 356.14915 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5966 1.9847 0.8353 5 6 1.6546 2.1116 -1.2942 6 1 2.4190 2.4096 -1.9964 7 6 0.3262 2.3431 -1.5818 8 7 -0.5393 2.5064 -0.6050 9 14 -0.2443 2.4248 -3.3586 10 1 -1.7064 2.6820 -3.3977 11 1 0.4707 3.5224 -4.0581 12 1 0.0489 1.1345 -4.0325 13 7 3.5026 1.4449 0.1360 14 6 4.1266 0.5814 -0.8755 15 6 5.6334 0.8446 -0.9112 16 6 3.9060 1.0453 1.4907 17 6 3.7937 2.2466 2.4315 18 1 4.1930 3.1367 1.9454 19 6 4.5676 1.9653 3.7368 20 6 3.6616 2.6010 4.8240 21 6 2.2476 2.3094 4.2627 22 7 2.3827 2.4658 2.7988 23 1 -0.3634 0.6447 0.8002 24 1 -0.3634 0.3706 -0.9586 25 1 -0.3633 -1.0154 0.1583 26 1 1.8934 -0.5137 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 -0.2396 2.4849 0.3172 29 1 3.9462 -0.4634 -0.6224 30 1 3.6966 0.7978 -1.8534 31 1 6.0782 0.2971 -1.7423 32 1 5.8128 1.9119 -1.0417 33 1 6.0827 0.5124 0.0246 34 1 3.2543 0.2458 1.8430 35 1 4.9372 0.6924 1.4736 36 1 4.6708 0.8927 3.9000 37 1 5.5442 2.4491 3.7176 38 1 3.8377 3.6740 4.9004 39 1 3.8072 2.1139 5.7881 40 1 1.5277 3.0271 4.6562 41 1 1.9439 1.2920 4.5092 42 1 1.7776 1.8238 2.3092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234029809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:45 Heat of formation + Delta-G solvation = -3.311843 kcal Electronic energy + Delta-G solvation = -19031.428746 eV Core-core repulsion = 16431.896970 eV Total energy + Delta-G solvation = -2599.531776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.49781 -38.45460 -35.74390 -32.66252 -31.95520 -31.00938 -30.18354 -27.82254 -25.35229 -24.52178 -23.30857 -21.92753 -21.51415 -20.80827 -18.50581 -17.16810 -17.04248 -16.27800 -16.22942 -15.62199 -15.38138 -14.93824 -14.62438 -14.18265 -13.97554 -13.88360 -13.37594 -13.11492 -12.92432 -12.70612 -12.67357 -12.53400 -12.37872 -12.20846 -12.09709 -11.94418 -11.84943 -11.76332 -11.57184 -11.49069 -11.25200 -10.84511 -9.74183 -9.26227 -8.79772 -8.47263 -5.98770 1.56433 1.60429 1.80704 2.62227 3.20537 3.23890 3.39604 3.82005 3.84557 4.09619 4.19686 4.26437 4.30032 4.37853 4.44496 4.51411 4.56774 4.63136 4.67199 4.69737 4.78085 4.92124 4.97125 4.97440 5.01553 5.08003 5.15623 5.20787 5.24544 5.27694 5.42286 5.44112 5.65624 5.69000 6.09080 6.18087 6.27153 6.40808 6.65053 6.73426 6.94825 7.63989 8.86434 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023213 B = 0.008609 C = 0.007191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.942402 B = 3251.576900 C = 3892.645492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.135 4.135 3 C 0.198 3.802 4 H 0.042 0.958 5 C -0.610 4.610 6 H 0.035 0.965 7 C -0.001 4.001 8 N -0.904 5.904 9 Si 1.085 2.915 10 H -0.286 1.286 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.534 5.534 14 C 0.056 3.944 15 C -0.135 4.135 16 C 0.037 3.963 17 C 0.087 3.913 18 H 0.063 0.937 19 C -0.129 4.129 20 C -0.118 4.118 21 C 0.036 3.964 22 N -0.703 5.703 23 H 0.036 0.964 24 H 0.057 0.943 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.033 0.967 28 H 0.264 0.736 29 H 0.020 0.980 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.021 0.979 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.565 -4.803 7.552 13.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.174 4.174 3 C 0.090 3.910 4 H 0.060 0.940 5 C -0.648 4.648 6 H 0.053 0.947 7 C -0.203 4.203 8 N -0.539 5.539 9 Si 0.910 3.090 10 H -0.212 1.212 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.257 5.257 14 C -0.072 4.072 15 C -0.192 4.192 16 C -0.092 4.092 17 C -0.023 4.023 18 H 0.081 0.919 19 C -0.168 4.168 20 C -0.156 4.156 21 C -0.093 4.093 22 N -0.337 5.337 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.430 -3.398 6.521 11.187 hybrid contribution 0.728 -1.846 0.921 2.187 sum 9.158 -5.244 7.442 12.913 Atomic orbital electron populations 1.21863 0.95871 0.98356 1.02505 1.22250 0.96567 1.00579 0.98041 1.19566 0.83575 0.90767 0.97126 0.94049 1.21846 0.93863 1.44367 1.04699 0.94678 1.26473 0.93799 0.92869 1.07205 1.70945 1.38846 1.43105 1.01035 0.83380 0.75609 0.77286 0.72731 1.21152 1.20778 1.20200 1.62263 1.09761 1.51634 1.02049 1.21968 0.95588 0.93462 0.96230 1.21746 0.93907 1.01751 1.01829 1.22737 1.00618 0.95582 0.90275 1.22262 0.88272 0.96864 0.94872 0.91906 1.22821 0.99392 1.01437 0.93157 1.22653 0.92892 1.01519 0.98567 1.22960 0.98848 0.99484 0.87984 1.62219 1.06858 1.58452 1.06210 0.94478 0.92364 0.94572 0.94063 0.94893 0.92529 0.96180 0.92634 0.91223 0.93105 0.92119 0.96082 0.89477 0.90669 0.89372 0.90910 0.88694 0.90995 0.94210 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.92 8.21 71.98 0.59 -5.33 16 2 C -0.13 -6.04 4.54 30.60 0.14 -5.90 16 3 C 0.20 9.53 1.55 44.17 0.07 9.60 16 4 H 0.04 2.17 3.54 -2.38 -0.01 2.16 16 5 C -0.61 -33.67 7.70 25.60 0.20 -33.47 16 6 H 0.03 2.03 7.20 -2.91 -0.02 2.01 16 7 C 0.00 -0.04 3.26 84.65 0.28 0.23 16 8 N -0.90 -52.08 11.47 21.45 0.25 -51.84 16 9 Si 1.09 50.15 29.90 68.60 2.05 52.20 16 10 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 13 N -0.53 -22.34 4.31 -875.39 -3.78 -26.11 16 14 C 0.06 2.11 4.47 86.30 0.39 2.49 16 15 C -0.13 -3.98 9.80 71.98 0.71 -3.28 16 16 C 0.04 1.27 4.21 86.30 0.36 1.64 16 17 C 0.09 2.91 3.64 45.26 0.16 3.08 16 18 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 19 C -0.13 -3.10 6.42 31.78 0.20 -2.90 16 20 C -0.12 -2.68 7.08 31.98 0.23 -2.46 16 21 C 0.04 1.04 7.57 86.77 0.66 1.69 16 22 N -0.70 -26.09 6.77 -482.35 -3.26 -29.35 16 23 H 0.04 1.78 6.62 -2.39 -0.02 1.76 16 24 H 0.06 2.99 5.28 -2.39 -0.01 2.98 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.04 1.87 6.95 -2.39 -0.02 1.85 16 27 H 0.03 1.35 6.36 -2.38 -0.02 1.33 16 28 H 0.26 15.49 5.85 -92.71 -0.54 14.94 16 29 H 0.02 0.74 7.08 -2.38 -0.02 0.72 16 30 H 0.06 2.41 6.59 -2.39 -0.02 2.39 16 31 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.06 1.56 6.60 -2.39 -0.02 1.55 16 34 H 0.02 0.76 5.94 -2.39 -0.01 0.74 16 35 H 0.09 2.58 6.00 -2.39 -0.01 2.56 16 36 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.33 13.89 5.29 -89.69 -0.47 13.42 16 Total: -1.00 -60.10 302.64 -0.02 -60.12 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.74 Total: 29.59 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 3.98 Total: -34.60 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -6.79 Total: -107.30 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.05 Total: 52.20 kcal Total: -60.10 -0.02 -60.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234029809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.807 kcal (2) G-P(sol) polarization free energy of solvation -60.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds