Wall clock time and date at job start Mon Mar 30 2020 04:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47164 * 2 1 4 4 N 1.46897 * 109.47158 * 180.50118 * 3 2 1 5 5 C 1.46908 * 110.99958 * 195.75972 * 4 3 2 6 6 H 1.09000 * 109.46786 * 293.67101 * 5 4 3 7 7 C 1.50700 * 109.46932 * 53.67022 * 5 4 3 8 8 H 1.08007 * 119.99888 * 0.02562 * 7 5 4 9 9 C 1.37874 * 120.00183 * 179.97438 * 7 5 4 10 10 N 1.31519 * 119.99809 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 120.00314 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47010 * 90.00013 * 11 9 7 13 13 H 1.48500 * 109.46964 * 209.99956 * 11 9 7 14 14 H 1.48496 * 109.46924 * 329.99838 * 11 9 7 15 15 C 1.52995 * 109.46966 * 173.66770 * 5 4 3 16 16 C 1.53001 * 109.47450 * 296.41420 * 15 5 4 17 17 C 1.46900 * 110.99839 * 71.80884 * 4 3 2 18 18 H 1.08995 * 110.63030 * 331.03492 * 17 4 3 19 19 C 1.55146 * 110.70722 * 94.14005 * 17 4 3 20 20 C 1.55116 * 101.55705 * 153.90271 * 19 17 4 21 21 N 1.47840 * 104.90565 * 323.16013 * 20 19 17 22 22 C 1.47439 * 108.57026 * 23.97334 * 21 20 19 23 23 H 1.08997 * 109.46912 * 300.00005 * 1 2 3 24 24 H 1.09007 * 109.46939 * 60.00000 * 1 2 3 25 25 H 1.08993 * 109.46939 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46912 * 239.99994 * 2 1 3 27 27 H 1.08997 * 109.46855 * 119.99975 * 2 1 3 28 28 H 1.09002 * 109.47089 * 60.49869 * 3 2 1 29 29 H 1.09005 * 109.46955 * 300.50368 * 3 2 1 30 30 H 0.96992 * 120.00445 * 179.97438 * 10 9 7 31 31 H 1.09005 * 109.47211 * 56.41208 * 15 5 4 32 32 H 1.09003 * 109.47356 * 176.41154 * 15 5 4 33 33 H 1.08995 * 109.47085 * 173.33239 * 16 15 5 34 34 H 1.09002 * 109.47021 * 293.33578 * 16 15 5 35 35 H 1.09003 * 109.46881 * 53.32912 * 16 15 5 36 36 H 1.09003 * 110.98783 * 272.12631 * 19 17 4 37 37 H 1.09005 * 110.98639 * 35.94358 * 19 17 4 38 38 H 1.08996 * 110.42300 * 204.23821 * 20 19 17 39 39 H 1.08998 * 110.21151 * 81.97202 * 20 19 17 40 40 H 1.00905 * 111.00002 * 261.70162 * 21 20 19 41 41 H 1.09001 * 109.88923 * 239.60776 * 22 21 20 42 42 H 1.08995 * 110.02545 * 118.49349 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 -0.0121 5 6 4.0385 2.7614 0.3599 6 1 3.7772 3.4880 -0.4094 7 6 3.4435 3.1883 1.6770 8 1 2.7425 2.5440 2.1870 9 6 3.7949 4.4007 2.2316 10 7 4.6497 5.1844 1.6113 11 14 3.0579 4.9295 3.8646 12 1 3.9213 4.4530 4.9748 13 1 2.9663 6.4110 3.9096 14 1 1.7003 4.3451 4.0073 15 6 5.5608 2.6815 0.4900 16 6 5.9261 1.7287 1.6301 17 6 4.0246 1.0182 -1.3206 18 1 3.3250 0.3385 -1.8070 19 6 4.3116 2.2477 -2.2221 20 6 5.4102 1.6917 -3.1655 21 7 6.2329 0.8082 -2.3120 22 6 5.4121 0.3590 -1.1725 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6841 1.9537 0.8944 29 1 1.6694 1.9589 -0.8855 30 1 4.8967 6.0375 2.0012 31 1 5.9864 2.3116 -0.4429 32 1 5.9599 3.6732 0.7033 33 1 7.0056 1.5795 1.6471 34 1 5.6035 2.1572 2.5790 35 1 5.4291 0.7708 1.4763 36 1 3.4223 2.5374 -2.7819 37 1 4.6902 3.0835 -1.6336 38 1 6.0160 2.5051 -3.5648 39 1 4.9571 1.1215 -3.9764 40 1 7.0638 1.2842 -1.9938 41 1 5.8738 0.6731 -0.2364 42 1 5.3109 -0.7261 -1.1902 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249736773.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:22 Heat of formation + Delta-G solvation = 18.703036 kcal Electronic energy + Delta-G solvation = -19220.324301 eV Core-core repulsion = 16621.747162 eV Total energy + Delta-G solvation = -2598.577139 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.43443 -35.77940 -34.03137 -32.02120 -30.79246 -28.71260 -28.12788 -26.11410 -24.53359 -22.98703 -21.13385 -20.85096 -19.81426 -18.60034 -16.23925 -15.90400 -15.79172 -14.58620 -14.32351 -13.98601 -13.69764 -13.56377 -12.87373 -12.71037 -12.53208 -12.24028 -11.83020 -11.54584 -11.30807 -11.12870 -10.97159 -10.94216 -10.76151 -10.74039 -10.57142 -10.35548 -10.17098 -9.85183 -9.73100 -9.62191 -9.24920 -8.80392 -8.39783 -8.03561 -7.08358 -6.03685 -4.06251 3.27753 3.34966 3.37471 4.37275 4.62379 4.93150 5.22564 5.27971 5.41322 5.48538 5.60981 5.66444 5.80984 5.85022 6.02072 6.07187 6.12459 6.24551 6.28710 6.34551 6.36903 6.47275 6.51098 6.57981 6.62861 6.71218 6.74610 6.84045 6.90531 7.07148 7.22509 7.33778 7.45048 7.66065 7.73229 7.77852 7.81393 8.16434 8.33327 8.60754 8.98987 9.57326 11.02756 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.010292 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.231065 B = 2719.976026 C = 3658.566843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.059 3.941 4 N -0.522 5.522 5 C 0.213 3.787 6 H 0.008 0.992 7 C -0.500 4.500 8 H 0.063 0.937 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.275 1.275 15 C -0.118 4.118 16 C -0.125 4.125 17 C 0.070 3.930 18 H 0.069 0.931 19 C -0.198 4.198 20 C 0.051 3.949 21 N -0.687 5.687 22 C 0.033 3.967 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.015 0.985 30 H 0.259 0.741 31 H 0.025 0.975 32 H 0.085 0.915 33 H 0.014 0.986 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.334 0.666 41 H 0.094 0.906 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.432 -6.610 -5.126 8.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.069 4.069 4 N -0.245 5.245 5 C 0.107 3.893 6 H 0.025 0.975 7 C -0.538 4.538 8 H 0.081 0.919 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.156 4.156 16 C -0.182 4.182 17 C -0.041 4.041 18 H 0.088 0.912 19 C -0.238 4.238 20 C -0.078 4.078 21 N -0.315 5.315 22 C -0.096 4.096 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.104 0.896 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.112 0.888 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.271 -7.363 -5.130 9.063 hybrid contribution -0.730 1.809 0.751 2.090 sum -2.001 -5.554 -4.379 7.350 Atomic orbital electron populations 1.21726 0.96684 1.00685 1.01529 1.21564 0.94359 0.98165 1.01635 1.22078 0.88677 0.94848 1.01280 1.62131 1.06463 1.31924 1.23991 1.19350 0.91671 0.82947 0.95291 0.97474 1.21127 1.25379 1.02276 1.05058 0.91918 1.24875 0.95203 0.96542 0.97350 1.69874 1.33373 1.11097 1.38739 0.86611 0.79604 0.77560 0.84332 1.20721 1.21437 1.19992 1.21810 0.97876 1.00728 0.95202 1.21542 0.96364 0.99734 1.00535 1.22839 0.96282 0.95006 0.89973 0.91243 1.24065 0.99364 1.01346 0.99019 1.22744 0.94543 0.94475 0.96087 1.61804 1.08443 1.41123 1.20124 1.23125 0.93049 0.98914 0.94512 0.92751 0.93356 0.93407 0.93106 0.91662 0.89063 0.96671 0.93066 0.95693 0.89641 0.96693 0.92527 0.92974 0.92178 0.88000 0.92258 0.91577 0.85081 0.88757 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.88 6.00 -26.73 -0.16 -2.04 16 3 C 0.06 1.13 4.70 -3.83 -0.02 1.11 16 4 N -0.52 -10.53 3.58 -217.93 -0.78 -11.32 16 5 C 0.21 4.97 1.22 -68.86 -0.08 4.89 16 6 H 0.01 0.21 5.95 -51.93 -0.31 -0.10 16 7 C -0.50 -12.86 6.42 -34.44 -0.22 -13.08 16 8 H 0.06 1.63 6.35 -52.48 -0.33 1.30 16 9 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 10 N -0.89 -24.41 11.35 55.43 0.63 -23.78 16 11 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 15 C -0.12 -2.64 4.24 -26.73 -0.11 -2.76 16 16 C -0.12 -2.66 8.22 37.16 0.31 -2.35 16 17 C 0.07 1.25 2.76 -65.89 -0.18 1.07 16 18 H 0.07 1.21 6.30 -51.93 -0.33 0.88 16 19 C -0.20 -3.51 5.40 -24.48 -0.13 -3.64 16 20 C 0.05 0.79 7.57 -2.19 -0.02 0.77 16 21 N -0.69 -10.91 7.14 -110.68 -0.79 -11.70 16 22 C 0.03 0.57 6.28 -2.84 -0.02 0.55 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.78 6.62 -51.93 -0.34 0.43 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.09 1.93 5.66 -51.93 -0.29 1.64 16 29 H 0.02 0.29 8.06 -51.93 -0.42 -0.13 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.02 0.50 3.43 -51.93 -0.18 0.33 16 32 H 0.09 2.18 6.17 -51.93 -0.32 1.86 16 33 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 1.33 7.38 -51.93 -0.38 0.95 16 35 H 0.05 1.08 6.42 -51.93 -0.33 0.75 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.10 2.10 4.25 -51.93 -0.22 1.88 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.33 5.09 8.39 -39.29 -0.33 4.76 16 41 H 0.09 1.74 3.01 -51.93 -0.16 1.58 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 300.52 15.07 4.53 4.53 Total: -1.00 -25.91 300.52 -8.69 -34.59 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.89 Total: 7.45 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -0.37 Total: -15.58 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.94 Total: -46.80 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -25.91 -8.69 -34.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249736773.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.295 kcal (2) G-P(sol) polarization free energy of solvation -25.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds