Wall clock time and date at job start Mon Mar 30 2020 04:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47164 * 2 1 4 4 N 1.46897 * 109.47158 * 180.50118 * 3 2 1 5 5 C 1.46908 * 110.99958 * 195.75972 * 4 3 2 6 6 H 1.09000 * 109.46786 * 293.67101 * 5 4 3 7 7 C 1.50700 * 109.46932 * 53.67022 * 5 4 3 8 8 H 1.08007 * 119.99888 * 0.02562 * 7 5 4 9 9 C 1.37874 * 120.00183 * 179.97438 * 7 5 4 10 10 N 1.31519 * 119.99809 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 120.00314 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47010 * 90.00013 * 11 9 7 13 13 H 1.48500 * 109.46964 * 209.99956 * 11 9 7 14 14 H 1.48496 * 109.46924 * 329.99838 * 11 9 7 15 15 C 1.52995 * 109.46966 * 173.66770 * 5 4 3 16 16 C 1.53001 * 109.47450 * 296.41420 * 15 5 4 17 17 C 1.46900 * 110.99839 * 71.80884 * 4 3 2 18 18 H 1.08995 * 110.63030 * 331.03492 * 17 4 3 19 19 C 1.55146 * 110.70722 * 94.14005 * 17 4 3 20 20 C 1.55116 * 101.55705 * 153.90271 * 19 17 4 21 21 N 1.47840 * 104.90565 * 323.16013 * 20 19 17 22 22 C 1.47439 * 108.57026 * 23.97334 * 21 20 19 23 23 H 1.08997 * 109.46912 * 300.00005 * 1 2 3 24 24 H 1.09007 * 109.46939 * 60.00000 * 1 2 3 25 25 H 1.08993 * 109.46939 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46912 * 239.99994 * 2 1 3 27 27 H 1.08997 * 109.46855 * 119.99975 * 2 1 3 28 28 H 1.09002 * 109.47089 * 60.49869 * 3 2 1 29 29 H 1.09005 * 109.46955 * 300.50368 * 3 2 1 30 30 H 0.96992 * 120.00445 * 179.97438 * 10 9 7 31 31 H 1.09005 * 109.47211 * 56.41208 * 15 5 4 32 32 H 1.09003 * 109.47356 * 176.41154 * 15 5 4 33 33 H 1.08995 * 109.47085 * 173.33239 * 16 15 5 34 34 H 1.09002 * 109.47021 * 293.33578 * 16 15 5 35 35 H 1.09003 * 109.46881 * 53.32912 * 16 15 5 36 36 H 1.09003 * 110.98783 * 272.12631 * 19 17 4 37 37 H 1.09005 * 110.98639 * 35.94358 * 19 17 4 38 38 H 1.08996 * 110.42300 * 204.23821 * 20 19 17 39 39 H 1.08998 * 110.21151 * 81.97202 * 20 19 17 40 40 H 1.00905 * 111.00002 * 261.70162 * 21 20 19 41 41 H 1.09001 * 109.88923 * 239.60776 * 22 21 20 42 42 H 1.08995 * 110.02545 * 118.49349 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 -0.0121 5 6 4.0385 2.7614 0.3599 6 1 3.7772 3.4880 -0.4094 7 6 3.4435 3.1883 1.6770 8 1 2.7425 2.5440 2.1870 9 6 3.7949 4.4007 2.2316 10 7 4.6497 5.1844 1.6113 11 14 3.0579 4.9295 3.8646 12 1 3.9213 4.4530 4.9748 13 1 2.9663 6.4110 3.9096 14 1 1.7003 4.3451 4.0073 15 6 5.5608 2.6815 0.4900 16 6 5.9261 1.7287 1.6301 17 6 4.0246 1.0182 -1.3206 18 1 3.3250 0.3385 -1.8070 19 6 4.3116 2.2477 -2.2221 20 6 5.4102 1.6917 -3.1655 21 7 6.2329 0.8082 -2.3120 22 6 5.4121 0.3590 -1.1725 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6841 1.9537 0.8944 29 1 1.6694 1.9589 -0.8855 30 1 4.8967 6.0375 2.0012 31 1 5.9864 2.3116 -0.4429 32 1 5.9599 3.6732 0.7033 33 1 7.0056 1.5795 1.6471 34 1 5.6035 2.1572 2.5790 35 1 5.4291 0.7708 1.4763 36 1 3.4223 2.5374 -2.7819 37 1 4.6902 3.0835 -1.6336 38 1 6.0160 2.5051 -3.5648 39 1 4.9571 1.1215 -3.9764 40 1 7.0638 1.2842 -1.9938 41 1 5.8738 0.6731 -0.2364 42 1 5.3109 -0.7261 -1.1902 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249736773.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:21 Heat of formation + Delta-G solvation = 2.404580 kcal Electronic energy + Delta-G solvation = -19221.031055 eV Core-core repulsion = 16621.747162 eV Total energy + Delta-G solvation = -2599.283893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.96586 -37.26362 -35.68699 -33.73213 -32.45077 -30.09487 -29.69386 -27.76617 -26.27027 -24.57642 -22.55910 -22.23908 -21.42107 -20.24862 -18.08301 -17.45891 -17.30083 -16.37568 -15.77071 -15.58344 -15.20573 -15.10590 -14.36911 -14.28517 -13.97482 -13.88525 -13.20256 -13.08579 -12.86835 -12.73314 -12.70060 -12.47624 -12.31432 -12.25816 -11.99742 -11.93777 -11.85070 -11.48678 -11.40842 -11.31399 -10.91427 -10.70933 -10.36670 -9.36167 -8.75170 -8.06901 -6.14464 1.39261 1.41769 1.49496 2.42698 3.16079 3.24550 3.52331 3.86788 4.06007 4.16032 4.31437 4.37384 4.44891 4.56282 4.60348 4.64054 4.74031 4.78437 4.81055 4.91471 4.95139 5.00455 5.06444 5.09685 5.20238 5.22590 5.28306 5.31744 5.42126 5.48297 5.56575 5.61703 5.74253 5.85504 5.92005 5.97563 6.34083 6.48040 6.49789 6.84688 7.00451 7.52279 8.98110 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.010292 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.231065 B = 2719.976026 C = 3658.566843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C 0.060 3.940 4 N -0.524 5.524 5 C 0.223 3.777 6 H -0.026 1.026 7 C -0.505 4.505 8 H 0.055 0.945 9 C 0.018 3.982 10 N -0.916 5.916 11 Si 0.944 3.056 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.270 1.270 15 C -0.109 4.109 16 C -0.113 4.113 17 C 0.068 3.932 18 H 0.082 0.918 19 C -0.196 4.196 20 C 0.058 3.942 21 N -0.682 5.682 22 C 0.038 3.962 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.009 0.991 30 H 0.257 0.743 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.036 0.964 34 H 0.028 0.972 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.338 0.662 41 H 0.081 0.919 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.628 -8.268 -5.778 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.068 4.068 4 N -0.247 5.247 5 C 0.117 3.883 6 H -0.009 1.009 7 C -0.544 4.544 8 H 0.073 0.927 9 C -0.181 4.181 10 N -0.557 5.557 11 Si 0.771 3.229 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.195 1.195 15 C -0.147 4.147 16 C -0.170 4.170 17 C -0.043 4.043 18 H 0.101 0.899 19 C -0.236 4.236 20 C -0.072 4.072 21 N -0.310 5.310 22 C -0.092 4.092 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.154 0.846 41 H 0.099 0.901 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.472 -9.036 -5.785 10.829 hybrid contribution -0.689 2.316 0.901 2.579 sum -2.161 -6.720 -4.884 8.584 Atomic orbital electron populations 1.21695 0.94766 1.02196 1.01532 1.21464 0.95964 0.95413 1.01824 1.22076 0.88076 0.97003 0.99617 1.62112 1.07141 1.29678 1.25731 1.19086 0.92261 0.83757 0.93226 1.00870 1.21370 1.24951 1.02160 1.05891 0.92681 1.25509 0.95705 0.96815 1.00055 1.70006 1.34477 1.11270 1.39922 0.85772 0.79050 0.77006 0.81117 1.20498 1.21433 1.19517 1.21654 0.97175 0.99247 0.96646 1.21411 0.97796 0.99303 0.98462 1.22944 0.97125 0.95312 0.88884 0.89948 1.23956 1.00276 1.00143 0.99243 1.22774 0.93782 0.94893 0.95703 1.61844 1.08379 1.41279 1.19542 1.23041 0.92343 0.99448 0.94343 0.93286 0.92890 0.91112 0.92051 0.92180 0.91740 0.97288 0.93331 0.93559 0.92997 0.94499 0.95267 0.92288 0.92053 0.91217 0.90986 0.89914 0.84619 0.90103 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.91 71.98 0.71 -2.87 16 2 C -0.11 -3.25 6.00 30.60 0.18 -3.07 16 3 C 0.06 2.30 4.70 86.30 0.41 2.70 16 4 N -0.52 -21.01 3.58 -843.40 -3.02 -24.03 16 5 C 0.22 10.65 1.22 44.17 0.05 10.70 16 6 H -0.03 -1.40 5.95 -2.39 -0.01 -1.42 16 7 C -0.51 -26.60 6.42 25.60 0.16 -26.43 16 8 H 0.06 2.93 6.35 -2.91 -0.02 2.92 16 9 C 0.02 0.96 5.30 84.65 0.45 1.40 16 10 N -0.92 -51.59 11.35 21.45 0.24 -51.34 16 11 Si 0.94 43.36 29.54 68.60 2.03 45.38 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 C -0.11 -4.94 4.24 30.59 0.13 -4.81 16 16 C -0.11 -4.76 8.22 71.98 0.59 -4.17 16 17 C 0.07 2.34 2.76 46.10 0.13 2.46 16 18 H 0.08 2.66 6.30 -2.39 -0.02 2.65 16 19 C -0.20 -6.80 5.40 32.05 0.17 -6.63 16 20 C 0.06 1.65 7.57 86.85 0.66 2.30 16 21 N -0.68 -19.93 7.14 -504.07 -3.60 -23.52 16 22 C 0.04 1.21 6.28 86.65 0.54 1.75 16 23 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.71 6.62 -2.39 -0.02 1.70 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.06 2.78 5.66 -2.39 -0.01 2.77 16 29 H 0.01 0.34 8.06 -2.38 -0.02 0.32 16 30 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 31 H 0.05 1.87 3.43 -2.38 -0.01 1.86 16 32 H 0.05 2.72 6.17 -2.39 -0.01 2.71 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.03 1.36 7.38 -2.39 -0.02 1.34 16 35 H 0.06 2.39 6.42 -2.39 -0.02 2.38 16 36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.07 2.91 4.25 -2.38 -0.01 2.90 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.34 9.52 8.39 -89.69 -0.75 8.77 16 41 H 0.08 2.83 3.01 -2.39 -0.01 2.83 16 42 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -55.88 300.52 0.10 -55.78 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.25 Total: 24.37 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 4.19 Total: -26.64 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -6.37 Total: -98.90 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -55.88 0.10 -55.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249736773.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.188 kcal (2) G-P(sol) polarization free energy of solvation -55.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds