Wall clock time and date at job start Mon Mar 30 2020 03:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46897 * 2 1 4 4 N 1.46900 * 109.47015 * 184.89667 * 3 2 1 5 5 C 1.47684 * 111.00136 * 296.94364 * 4 3 2 6 6 C 1.50783 * 108.10335 * 151.99563 * 5 4 3 7 7 H 1.08998 * 108.98661 * 333.98104 * 6 5 4 8 8 C 1.50702 * 108.99131 * 215.23597 * 6 5 4 9 9 H 1.07996 * 119.99984 * 263.96492 * 8 6 5 10 10 C 1.37877 * 119.99749 * 83.96577 * 8 6 5 11 11 N 1.31519 * 120.00300 * 5.47996 * 10 8 6 12 12 Si 1.86799 * 120.00013 * 185.47746 * 10 8 6 13 13 H 1.48506 * 109.47071 * 89.99723 * 12 10 8 14 14 H 1.48496 * 109.47344 * 210.00090 * 12 10 8 15 15 H 1.48502 * 109.46972 * 330.00077 * 12 10 8 16 16 N 1.47748 * 111.91314 * 94.60783 * 6 5 4 17 17 C 1.46901 * 110.99815 * 192.80898 * 16 6 5 18 18 C 1.48066 * 113.78692 * 318.87925 * 16 6 5 19 19 C 1.50745 * 112.93893 * 318.28195 * 18 16 6 20 20 C 1.40088 * 111.00010 * 168.30553 * 4 3 2 21 21 H 1.09001 * 109.02145 * 67.65970 * 20 4 3 22 22 C 1.53000 * 109.07081 * 308.67167 * 20 4 3 23 23 H 1.08993 * 109.47675 * 300.00195 * 1 2 3 24 24 H 1.09005 * 109.47242 * 60.00732 * 1 2 3 25 25 H 1.09007 * 109.47027 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47246 * 239.99514 * 2 1 3 27 27 H 1.09002 * 109.46516 * 119.99270 * 2 1 3 28 28 H 1.09004 * 109.47729 * 64.89875 * 3 2 1 29 29 H 1.09007 * 109.47486 * 304.89809 * 3 2 1 30 30 H 1.08995 * 109.73612 * 271.64470 * 5 4 3 31 31 H 1.09003 * 109.73766 * 32.34368 * 5 4 3 32 32 H 0.97002 * 120.00055 * 180.02562 * 11 10 8 33 33 H 1.08992 * 109.46621 * 183.32962 * 17 16 6 34 34 H 1.09002 * 109.46940 * 63.32970 * 17 16 6 35 35 H 1.08996 * 109.47101 * 303.33091 * 17 16 6 36 36 H 1.08998 * 108.79212 * 79.17967 * 18 16 6 37 37 H 1.09002 * 108.78238 * 197.39417 * 18 16 6 38 38 H 1.09000 * 109.55742 * 212.49157 * 19 18 16 39 39 H 1.09002 * 109.56237 * 332.81719 * 19 18 16 40 40 H 1.08999 * 109.47347 * 305.90940 * 22 20 4 41 41 H 1.08995 * 109.47354 * 65.91613 * 22 20 4 42 42 H 1.08998 * 109.46956 * 185.91650 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5042 1.4442 -0.1182 5 6 4.1299 0.7853 1.0460 6 6 5.4484 0.2036 0.6025 7 1 5.4033 -0.0025 -0.4669 8 6 5.6869 -1.0891 1.3394 9 1 6.2917 -1.0970 2.2341 10 6 5.1329 -2.2617 0.8714 11 7 4.4873 -2.2726 -0.2744 12 14 5.2992 -3.8350 1.8646 13 1 4.1500 -3.9553 2.7974 14 1 5.3151 -5.0013 0.9456 15 1 6.5649 -3.7989 2.6406 16 7 6.5740 1.1232 0.8679 17 6 7.7884 0.6848 0.1672 18 6 6.2705 2.5410 0.5677 19 6 5.4948 2.7173 -0.7128 20 6 3.9847 2.7325 -0.3863 21 1 3.8152 3.3635 0.4861 22 6 3.2212 3.3127 -1.5785 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5137 0.8901 28 1 1.7500 1.9304 0.9306 29 1 1.6067 1.9811 -0.8429 30 1 4.2977 1.5167 1.8366 31 1 3.4809 -0.0104 1.4115 32 1 4.0973 -3.0976 -0.6035 33 1 8.6158 1.3451 0.4266 34 1 7.6194 0.7197 -0.9091 35 1 8.0309 -0.3355 0.4640 36 1 5.6894 2.9575 1.3904 37 1 7.2080 3.0915 0.4890 38 1 5.7760 3.6597 -1.1829 39 1 5.7138 1.8908 -1.3889 40 1 3.2843 2.6236 -2.4206 41 1 2.1761 3.4576 -1.3050 42 1 3.6594 4.2705 -1.8592 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249869729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:23 Heat of formation + Delta-G solvation = 14.329364 kcal Electronic energy + Delta-G solvation = -19186.320838 eV Core-core repulsion = 16587.554043 eV Total energy + Delta-G solvation = -2598.766796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.27413 -35.85779 -33.75224 -32.56642 -31.06032 -28.92316 -27.93965 -25.28820 -24.60888 -23.42815 -22.31557 -20.55505 -19.41083 -18.60133 -16.45357 -15.42737 -15.08655 -14.62896 -14.31275 -14.14733 -13.88667 -13.66732 -12.74266 -12.62424 -12.52311 -12.23131 -11.66566 -11.64029 -11.46290 -11.20114 -11.07109 -11.04957 -10.85946 -10.78546 -10.64013 -10.32061 -10.28742 -10.01173 -9.71623 -9.63722 -9.46875 -8.89656 -8.39353 -7.27802 -6.94850 -5.89792 -3.95160 3.34462 3.41764 3.45646 4.46374 4.67719 5.12429 5.22129 5.37732 5.44050 5.56246 5.62544 5.72349 5.85798 5.88447 5.96790 5.99676 6.04458 6.21450 6.25607 6.30412 6.34199 6.35632 6.41941 6.46207 6.48842 6.56851 6.67575 6.77232 6.87428 6.94183 7.01353 7.11244 7.31979 7.69955 7.96098 8.11194 8.23016 8.27704 8.44446 8.77507 9.20148 9.68854 11.14638 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017380 B = 0.011647 C = 0.007537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.665476 B = 2403.555985 C = 3714.030832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.062 3.938 4 N -0.547 5.547 5 C 0.087 3.913 6 C 0.212 3.788 7 H 0.045 0.955 8 C -0.505 4.505 9 H 0.058 0.942 10 C 0.065 3.935 11 N -0.877 5.877 12 Si 0.886 3.114 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.275 1.275 16 N -0.551 5.551 17 C 0.047 3.953 18 C 0.056 3.944 19 C -0.141 4.141 20 C 0.108 3.892 21 H 0.013 0.987 22 C -0.149 4.149 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.015 0.985 29 H 0.067 0.933 30 H 0.015 0.985 31 H 0.083 0.917 32 H 0.258 0.742 33 H 0.039 0.961 34 H 0.008 0.992 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.365 8.242 -1.459 9.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.065 4.065 4 N -0.271 5.271 5 C -0.039 4.039 6 C 0.106 3.894 7 H 0.063 0.937 8 C -0.545 4.545 9 H 0.076 0.924 10 C -0.138 4.138 11 N -0.514 5.514 12 Si 0.714 3.286 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.200 1.200 16 N -0.276 5.276 17 C -0.102 4.102 18 C -0.073 4.073 19 C -0.181 4.181 20 C -0.003 4.003 21 H 0.030 0.970 22 C -0.207 4.207 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.033 0.967 29 H 0.086 0.914 30 H 0.033 0.967 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.026 0.974 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.251 7.839 -1.479 8.614 hybrid contribution -0.341 -0.357 0.308 0.582 sum -3.592 7.481 -1.171 8.381 Atomic orbital electron populations 1.21748 0.97158 1.01015 1.00577 1.21520 0.93336 0.96472 1.04265 1.22113 0.88503 0.97179 0.98718 1.59100 1.04200 1.20171 1.43662 1.22270 0.97813 0.95959 0.87891 1.19142 0.83753 0.88504 0.98008 0.93720 1.21072 1.31677 0.91198 1.10545 0.92390 1.24941 0.95726 0.98407 0.94704 1.70015 1.36093 1.27062 1.18241 0.86703 0.78456 0.83351 0.80083 1.20843 1.21520 1.20011 1.62291 1.06644 1.00351 1.58275 1.22070 0.91965 1.01126 0.95007 1.21884 0.98139 0.91970 0.95275 1.22083 0.94713 1.01410 0.99849 1.20391 0.94698 0.89570 0.95645 0.96972 1.22082 0.99443 1.00050 0.99084 0.93667 0.93477 0.93061 0.90303 0.91458 0.96681 0.91442 0.96712 0.89829 0.93243 0.94190 0.97353 0.90957 0.92617 0.93089 0.92419 0.90740 0.91839 0.92955 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.12 -2.17 5.76 -26.73 -0.15 -2.33 16 3 C 0.06 1.11 4.60 -3.83 -0.02 1.09 16 4 N -0.55 -11.03 3.83 -231.38 -0.89 -11.91 16 5 C 0.09 1.99 4.70 -4.50 -0.02 1.97 16 6 C 0.21 5.23 1.27 -69.51 -0.09 5.15 16 7 H 0.05 1.27 6.43 -51.93 -0.33 0.93 16 8 C -0.51 -13.69 7.37 -34.44 -0.25 -13.94 16 9 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 10 C 0.07 1.76 5.43 -17.82 -0.10 1.66 16 11 N -0.88 -24.37 12.90 55.43 0.72 -23.66 16 12 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 16 N -0.55 -12.23 4.66 -237.34 -1.11 -13.33 16 17 C 0.05 0.97 9.26 60.07 0.56 1.53 16 18 C 0.06 1.05 5.15 -4.31 -0.02 1.03 16 19 C -0.14 -2.51 4.99 -27.07 -0.13 -2.64 16 20 C 0.11 1.90 2.07 -70.44 -0.15 1.76 16 21 H 0.01 0.23 7.59 -51.93 -0.39 -0.17 16 22 C -0.15 -2.21 8.37 37.16 0.31 -1.90 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 27 H 0.07 1.40 6.30 -51.93 -0.33 1.07 16 28 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 1.09 5.43 -51.93 -0.28 0.80 16 30 H 0.01 0.34 6.77 -51.93 -0.35 -0.01 16 31 H 0.08 2.07 5.30 -51.93 -0.28 1.79 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.04 0.71 7.95 -51.93 -0.41 0.29 16 34 H 0.01 0.17 7.73 -51.93 -0.40 -0.23 16 35 H 0.07 1.60 7.41 -51.93 -0.38 1.22 16 36 H 0.06 1.06 6.52 -51.93 -0.34 0.72 16 37 H 0.05 0.86 7.74 -51.93 -0.40 0.46 16 38 H 0.06 0.87 7.94 -51.93 -0.41 0.46 16 39 H 0.07 1.53 6.72 -51.93 -0.35 1.18 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.72 6.25 -51.93 -0.32 0.39 16 42 H 0.05 0.65 7.99 -51.93 -0.42 0.23 16 LS Contribution 310.20 15.07 4.67 4.67 Total: -1.00 -27.42 310.20 -8.81 -36.23 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.49 Total: 0.28 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 0.30 Total: -8.41 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -1.28 Total: -48.91 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.42 -8.81 -36.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249869729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.564 kcal (2) G-P(sol) polarization free energy of solvation -27.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds