Wall clock time and date at job start Mon Mar 30 2020 03:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.46897 * 2 1 4 4 N 1.46900 * 109.47015 * 184.89667 * 3 2 1 5 5 C 1.47684 * 111.00136 * 296.94364 * 4 3 2 6 6 C 1.50783 * 108.10335 * 151.99563 * 5 4 3 7 7 H 1.08998 * 108.98661 * 333.98104 * 6 5 4 8 8 C 1.50702 * 108.99131 * 215.23597 * 6 5 4 9 9 H 1.07996 * 119.99984 * 263.96492 * 8 6 5 10 10 C 1.37877 * 119.99749 * 83.96577 * 8 6 5 11 11 N 1.31519 * 120.00300 * 5.47996 * 10 8 6 12 12 Si 1.86799 * 120.00013 * 185.47746 * 10 8 6 13 13 H 1.48506 * 109.47071 * 89.99723 * 12 10 8 14 14 H 1.48496 * 109.47344 * 210.00090 * 12 10 8 15 15 H 1.48502 * 109.46972 * 330.00077 * 12 10 8 16 16 N 1.47748 * 111.91314 * 94.60783 * 6 5 4 17 17 C 1.46901 * 110.99815 * 192.80898 * 16 6 5 18 18 C 1.48066 * 113.78692 * 318.87925 * 16 6 5 19 19 C 1.50745 * 112.93893 * 318.28195 * 18 16 6 20 20 C 1.40088 * 111.00010 * 168.30553 * 4 3 2 21 21 H 1.09001 * 109.02145 * 67.65970 * 20 4 3 22 22 C 1.53000 * 109.07081 * 308.67167 * 20 4 3 23 23 H 1.08993 * 109.47675 * 300.00195 * 1 2 3 24 24 H 1.09005 * 109.47242 * 60.00732 * 1 2 3 25 25 H 1.09007 * 109.47027 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47246 * 239.99514 * 2 1 3 27 27 H 1.09002 * 109.46516 * 119.99270 * 2 1 3 28 28 H 1.09004 * 109.47729 * 64.89875 * 3 2 1 29 29 H 1.09007 * 109.47486 * 304.89809 * 3 2 1 30 30 H 1.08995 * 109.73612 * 271.64470 * 5 4 3 31 31 H 1.09003 * 109.73766 * 32.34368 * 5 4 3 32 32 H 0.97002 * 120.00055 * 180.02562 * 11 10 8 33 33 H 1.08992 * 109.46621 * 183.32962 * 17 16 6 34 34 H 1.09002 * 109.46940 * 63.32970 * 17 16 6 35 35 H 1.08996 * 109.47101 * 303.33091 * 17 16 6 36 36 H 1.08998 * 108.79212 * 79.17967 * 18 16 6 37 37 H 1.09002 * 108.78238 * 197.39417 * 18 16 6 38 38 H 1.09000 * 109.55742 * 212.49157 * 19 18 16 39 39 H 1.09002 * 109.56237 * 332.81719 * 19 18 16 40 40 H 1.08999 * 109.47347 * 305.90940 * 22 20 4 41 41 H 1.08995 * 109.47354 * 65.91613 * 22 20 4 42 42 H 1.08998 * 109.46956 * 185.91650 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5042 1.4442 -0.1182 5 6 4.1299 0.7853 1.0460 6 6 5.4484 0.2036 0.6025 7 1 5.4033 -0.0025 -0.4669 8 6 5.6869 -1.0891 1.3394 9 1 6.2917 -1.0970 2.2341 10 6 5.1329 -2.2617 0.8714 11 7 4.4873 -2.2726 -0.2744 12 14 5.2992 -3.8350 1.8646 13 1 4.1500 -3.9553 2.7974 14 1 5.3151 -5.0013 0.9456 15 1 6.5649 -3.7989 2.6406 16 7 6.5740 1.1232 0.8679 17 6 7.7884 0.6848 0.1672 18 6 6.2705 2.5410 0.5677 19 6 5.4948 2.7173 -0.7128 20 6 3.9847 2.7325 -0.3863 21 1 3.8152 3.3635 0.4861 22 6 3.2212 3.3127 -1.5785 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5137 0.8901 28 1 1.7500 1.9304 0.9306 29 1 1.6067 1.9811 -0.8429 30 1 4.2977 1.5167 1.8366 31 1 3.4809 -0.0104 1.4115 32 1 4.0973 -3.0976 -0.6035 33 1 8.6158 1.3451 0.4266 34 1 7.6194 0.7197 -0.9091 35 1 8.0309 -0.3355 0.4640 36 1 5.6894 2.9575 1.3904 37 1 7.2080 3.0915 0.4890 38 1 5.7760 3.6597 -1.1829 39 1 5.7138 1.8908 -1.3889 40 1 3.2843 2.6236 -2.4206 41 1 2.1761 3.4576 -1.3050 42 1 3.6594 4.2705 -1.8592 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249869729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:22 Heat of formation + Delta-G solvation = -3.345256 kcal Electronic energy + Delta-G solvation = -19187.087267 eV Core-core repulsion = 16587.554043 eV Total energy + Delta-G solvation = -2599.533225 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85144 -37.49356 -35.39533 -34.31868 -32.74023 -30.44783 -29.61554 -26.80989 -26.38371 -25.07169 -23.95697 -22.04469 -20.90331 -20.35764 -18.42343 -17.07907 -16.85658 -16.23596 -15.92571 -15.78122 -15.43743 -15.29295 -14.27088 -14.14800 -13.97153 -13.85851 -13.22570 -13.15485 -12.95372 -12.85657 -12.71122 -12.62110 -12.57208 -12.39443 -12.21016 -12.02828 -11.78211 -11.65744 -11.44049 -11.23423 -11.16201 -10.74995 -10.48164 -8.84681 -8.75051 -7.98595 -6.11121 1.41518 1.43401 1.52633 2.46193 3.12022 3.28600 3.51374 3.84546 4.03292 4.13740 4.26959 4.31230 4.48229 4.54079 4.60618 4.64347 4.67409 4.71961 4.77100 4.82207 4.91903 4.95117 4.98471 5.01072 5.03347 5.10729 5.18465 5.27706 5.28010 5.39677 5.43805 5.49419 5.62505 5.74607 5.84341 6.37231 6.43155 6.47971 6.76419 6.96496 7.10602 7.56442 9.03642 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017380 B = 0.011647 C = 0.007537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.665476 B = 2403.555985 C = 3714.030832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C 0.064 3.936 4 N -0.562 5.562 5 C 0.102 3.898 6 C 0.226 3.774 7 H 0.004 0.996 8 C -0.521 4.521 9 H 0.044 0.956 10 C 0.025 3.975 11 N -0.899 5.899 12 Si 0.943 3.057 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.273 1.273 16 N -0.567 5.567 17 C 0.053 3.947 18 C 0.055 3.945 19 C -0.134 4.134 20 C 0.099 3.901 21 H 0.018 0.982 22 C -0.140 4.140 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.034 0.966 28 H 0.023 0.977 29 H 0.092 0.908 30 H 0.012 0.988 31 H 0.057 0.943 32 H 0.257 0.743 33 H 0.074 0.926 34 H 0.001 0.999 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.042 0.958 40 H 0.049 0.951 41 H 0.065 0.935 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.951 10.035 -1.498 10.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C -0.062 4.062 4 N -0.287 5.287 5 C -0.025 4.025 6 C 0.120 3.880 7 H 0.022 0.978 8 C -0.561 4.561 9 H 0.062 0.938 10 C -0.176 4.176 11 N -0.537 5.537 12 Si 0.769 3.231 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.198 1.198 16 N -0.292 5.292 17 C -0.095 4.095 18 C -0.073 4.073 19 C -0.173 4.173 20 C -0.011 4.011 21 H 0.035 0.965 22 C -0.197 4.197 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.110 0.890 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.020 0.980 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.834 9.650 -1.518 10.495 hybrid contribution -0.109 -0.874 0.315 0.936 sum -3.944 8.776 -1.203 9.696 Atomic orbital electron populations 1.21668 0.93853 1.01770 1.02262 1.21406 0.96178 0.96397 1.00972 1.22178 0.87113 0.96857 1.00084 1.59031 1.05594 1.21849 1.42198 1.21844 0.96598 0.95269 0.88779 1.18830 0.85535 0.88678 0.94987 0.97785 1.21288 1.31586 0.92911 1.10297 0.93798 1.25549 0.95470 1.01024 0.95511 1.70135 1.36693 1.27557 1.19330 0.85807 0.78414 0.80026 0.78830 1.20322 1.21183 1.19816 1.62190 1.06178 1.01884 1.58941 1.22017 0.92486 1.00600 0.94428 1.21964 0.99710 0.89784 0.95818 1.22039 0.94858 1.01820 0.98631 1.20569 0.95062 0.88354 0.97122 0.96480 1.22001 1.00032 1.00674 0.97017 0.92150 0.91499 0.92879 0.93568 0.94757 0.95840 0.88996 0.97026 0.92485 0.93401 0.90767 0.97999 0.93420 0.92693 0.90510 0.88919 0.93965 0.93150 0.91578 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.91 71.98 0.71 -3.11 16 2 C -0.11 -4.16 5.76 30.59 0.18 -3.98 16 3 C 0.06 2.23 4.60 86.30 0.40 2.62 16 4 N -0.56 -22.66 3.83 -885.95 -3.40 -26.05 16 5 C 0.10 4.80 4.70 85.43 0.40 5.20 16 6 C 0.23 11.56 1.27 43.29 0.06 11.62 16 7 H 0.00 0.26 6.43 -2.39 -0.02 0.24 16 8 C -0.52 -29.25 7.37 25.60 0.19 -29.07 16 9 H 0.04 2.53 7.82 -2.91 -0.02 2.51 16 10 C 0.03 1.40 5.43 84.65 0.46 1.86 16 11 N -0.90 -51.87 12.90 21.45 0.28 -51.59 16 12 Si 0.94 44.42 29.54 68.60 2.03 46.44 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 15 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 16 N -0.57 -25.28 4.66 -904.82 -4.22 -29.49 16 17 C 0.05 2.21 9.26 127.69 1.18 3.39 16 18 C 0.06 1.98 5.15 85.35 0.44 2.42 16 19 C -0.13 -4.54 4.99 30.38 0.15 -4.39 16 20 C 0.10 3.32 2.07 46.66 0.10 3.42 16 21 H 0.02 0.58 7.59 -2.39 -0.02 0.56 16 22 C -0.14 -3.72 8.37 71.98 0.60 -3.11 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.03 1.48 6.30 -2.39 -0.02 1.46 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 2.73 5.43 -2.38 -0.01 2.72 16 30 H 0.01 0.54 6.77 -2.39 -0.02 0.52 16 31 H 0.06 2.95 5.30 -2.39 -0.01 2.94 16 32 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.07 2.51 7.95 -2.39 -0.02 2.49 16 34 H 0.00 0.06 7.73 -2.39 -0.02 0.05 16 35 H 0.05 2.17 7.41 -2.39 -0.02 2.15 16 36 H 0.05 1.99 6.52 -2.39 -0.02 1.97 16 37 H 0.08 2.35 7.74 -2.39 -0.02 2.34 16 38 H 0.09 2.47 7.94 -2.39 -0.02 2.46 16 39 H 0.04 1.72 6.72 -2.39 -0.02 1.71 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.57 6.25 -2.39 -0.01 1.55 16 42 H 0.08 1.65 7.99 -2.39 -0.02 1.63 16 Total: -1.00 -61.50 310.20 0.51 -60.99 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.96 Total: 12.83 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 4.86 Total: -13.12 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -7.34 Total: -107.14 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -61.50 0.51 -60.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249869729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.640 kcal (2) G-P(sol) polarization free energy of solvation -61.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds