Wall clock time and date at job start Mon Mar 30 2020 03:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46987 * 2 1 4 4 N 1.46903 * 109.47315 * 185.12775 * 3 2 1 5 5 C 1.48195 * 110.99963 * 305.75083 * 4 3 2 6 6 C 1.53929 * 112.77545 * 191.67703 * 5 4 3 7 7 H 1.08997 * 108.87241 * 79.06347 * 6 5 4 8 8 C 1.50697 * 108.86620 * 197.58559 * 6 5 4 9 9 H 1.08005 * 119.99996 * 65.22754 * 8 6 5 10 10 C 1.37875 * 120.00156 * 245.22946 * 8 6 5 11 11 N 1.31512 * 120.00143 * 8.71128 * 10 8 6 12 12 Si 1.86804 * 119.99950 * 188.71758 * 10 8 6 13 13 H 1.48500 * 109.47135 * 269.99698 * 12 10 8 14 14 H 1.48500 * 109.47107 * 29.99764 * 12 10 8 15 15 H 1.48499 * 109.47081 * 149.99685 * 12 10 8 16 16 N 1.44262 * 112.54572 * 318.37284 * 6 5 4 17 17 C 1.46896 * 111.00054 * 217.13510 * 16 6 5 18 18 C 1.48105 * 109.97437 * 93.90337 * 16 6 5 19 19 C 1.46137 * 112.19985 * 279.71338 * 18 16 6 20 20 C 1.44248 * 111.00083 * 177.50027 * 4 3 2 21 21 H 1.08998 * 109.60905 * 99.93648 * 20 4 3 22 22 C 1.52999 * 109.61066 * 339.59545 * 20 4 3 23 23 H 1.09001 * 109.47218 * 59.99709 * 1 2 3 24 24 H 1.08993 * 109.46848 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46777 * 300.00173 * 1 2 3 26 26 H 1.08993 * 109.46909 * 240.00596 * 2 1 3 27 27 H 1.08991 * 109.47117 * 120.00155 * 2 1 3 28 28 H 1.09007 * 109.47346 * 65.12715 * 3 2 1 29 29 H 1.09005 * 109.47342 * 305.13087 * 3 2 1 30 30 H 1.09000 * 108.82253 * 70.82230 * 5 4 3 31 31 H 1.09002 * 108.81938 * 312.52549 * 5 4 3 32 32 H 0.97008 * 119.99620 * 355.41292 * 11 10 8 33 33 H 1.08998 * 109.47456 * 67.21239 * 17 16 6 34 34 H 1.08998 * 109.46974 * 187.21234 * 17 16 6 35 35 H 1.08999 * 109.47199 * 307.20471 * 17 16 6 36 36 H 1.09001 * 108.93508 * 159.00571 * 18 16 6 37 37 H 1.09001 * 108.86124 * 40.36582 * 18 16 6 38 38 H 1.09004 * 108.98928 * 300.24168 * 19 18 16 39 39 H 1.09001 * 108.99420 * 181.48965 * 19 18 16 40 40 H 1.09000 * 109.46680 * 63.19234 * 22 20 4 41 41 H 1.09005 * 109.47294 * 183.18784 * 22 20 4 42 42 H 1.08995 * 109.47356 * 303.19086 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4444 -0.1238 5 6 4.1266 0.6037 0.9257 6 6 5.6508 0.7983 1.0185 7 1 5.8561 1.7159 1.5697 8 6 6.2456 -0.3645 1.7703 9 1 6.1999 -1.3588 1.3511 10 6 6.8481 -0.1590 2.9933 11 7 6.7553 1.0125 3.5835 12 14 7.7965 -1.5448 3.8118 13 1 6.8785 -2.3304 4.6751 14 1 8.3759 -2.4307 2.7703 15 1 8.8889 -0.9749 4.6406 16 7 6.2773 0.8851 -0.2780 17 6 7.5860 0.2179 -0.2761 18 6 6.4052 2.3036 -0.6842 19 6 5.1565 2.8385 -1.2229 20 6 4.0156 2.7916 -0.1858 21 1 4.3956 3.0840 0.7931 22 6 2.8977 3.7467 -0.6088 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.7536 1.9292 0.9324 29 1 1.6036 1.9822 -0.8405 30 1 3.9185 -0.4436 0.7069 31 1 3.6808 0.8550 1.8881 32 1 6.3205 1.7513 3.1294 33 1 7.4465 -0.8553 -0.1468 34 1 8.0917 0.4071 -1.2229 35 1 8.1910 0.6070 0.5429 36 1 7.1822 2.3852 -1.4443 37 1 6.6973 2.8939 0.1844 38 1 4.8670 2.2529 -2.0955 39 1 5.3160 3.8726 -1.5284 40 1 2.1117 3.7431 0.1463 41 1 3.2998 4.7548 -0.7099 42 1 2.4851 3.4227 -1.5642 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249869732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:26 Heat of formation + Delta-G solvation = 11.200061 kcal Electronic energy + Delta-G solvation = -19035.241113 eV Core-core repulsion = 16436.338620 eV Total energy + Delta-G solvation = -2598.902493 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.13063 -36.30177 -34.05801 -32.70720 -31.32519 -29.13164 -27.77696 -25.25081 -24.68993 -23.35890 -22.26806 -20.87115 -19.65665 -18.61736 -16.57087 -15.88769 -14.99633 -14.83160 -14.66286 -14.00379 -13.81352 -13.65410 -13.34931 -12.54825 -12.31816 -12.23818 -12.17837 -11.76143 -11.66943 -11.37964 -11.35296 -11.08379 -10.80766 -10.62042 -10.51607 -10.35773 -10.23441 -10.18016 -9.95204 -9.85466 -9.64070 -8.66619 -8.32330 -7.38810 -6.97976 -6.45634 -4.14991 3.37972 3.41623 3.57398 4.41705 4.49624 5.06851 5.18983 5.29651 5.34262 5.34589 5.40163 5.59779 5.71140 5.74912 5.90648 5.94875 5.99384 6.05180 6.16803 6.20504 6.23191 6.32838 6.39878 6.40448 6.47050 6.50910 6.60812 6.65165 6.66679 6.80237 6.86773 7.01013 7.21103 7.43056 7.70006 7.90290 8.06388 8.24582 8.54701 8.62058 8.81964 9.56634 10.91055 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021784 B = 0.008622 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.049409 B = 3246.778447 C = 3960.074191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.059 3.941 4 N -0.541 5.541 5 C 0.093 3.907 6 C 0.187 3.813 7 H 0.018 0.982 8 C -0.594 4.594 9 H 0.057 0.943 10 C 0.024 3.976 11 N -0.909 5.909 12 Si 1.068 2.932 13 H -0.287 1.287 14 H -0.285 1.285 15 H -0.285 1.285 16 N -0.523 5.523 17 C 0.064 3.936 18 C 0.054 3.946 19 C -0.098 4.098 20 C 0.095 3.905 21 H 0.039 0.961 22 C -0.154 4.154 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.014 0.986 32 H 0.268 0.732 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.020 0.980 36 H 0.051 0.949 37 H 0.018 0.982 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.805 2.409 -7.554 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.069 4.069 4 N -0.266 5.266 5 C -0.034 4.034 6 C 0.079 3.921 7 H 0.036 0.964 8 C -0.633 4.633 9 H 0.075 0.925 10 C -0.182 4.182 11 N -0.546 5.546 12 Si 0.896 3.104 13 H -0.214 1.214 14 H -0.211 1.211 15 H -0.210 1.210 16 N -0.248 5.248 17 C -0.084 4.084 18 C -0.074 4.074 19 C -0.136 4.136 20 C -0.014 4.014 21 H 0.057 0.943 22 C -0.211 4.211 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.032 0.968 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.148 1.574 -6.933 9.399 hybrid contribution -0.561 1.222 0.101 1.348 sum -6.708 2.796 -6.832 9.975 Atomic orbital electron populations 1.21731 0.96401 1.01215 1.01197 1.21591 0.94564 0.97278 1.02863 1.22216 0.89263 0.96352 0.99043 1.60698 1.03002 1.12185 1.50748 1.22659 0.95839 0.96162 0.88766 1.19329 0.89649 0.97464 0.85680 0.96402 1.21959 1.39980 0.94624 1.06756 0.92458 1.25902 0.95944 1.01541 0.94771 1.70839 1.42890 1.02649 1.38264 0.83554 0.76581 0.74503 0.75735 1.21366 1.21119 1.21020 1.61825 1.20836 1.10841 1.31292 1.21928 0.89616 1.00271 0.96594 1.21019 0.96773 0.91147 0.98447 1.20564 0.94911 0.98831 0.99309 1.21179 0.94520 0.88046 0.97671 0.94318 1.22168 0.98685 0.98807 1.01462 0.93082 0.92943 0.93224 0.91238 0.91860 0.96274 0.91192 0.91608 0.96789 0.91928 0.91464 0.95457 0.96107 0.93009 0.96356 0.90962 0.92993 0.92871 0.92839 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.42 16 2 C -0.13 -1.90 5.35 -26.73 -0.14 -2.04 16 3 C 0.06 0.95 3.77 -3.82 -0.01 0.94 16 4 N -0.54 -10.38 4.23 -226.17 -0.96 -11.33 16 5 C 0.09 2.11 4.21 -2.63 -0.01 2.10 16 6 C 0.19 4.65 2.00 -69.79 -0.14 4.51 16 7 H 0.02 0.50 4.09 -51.93 -0.21 0.29 16 8 C -0.59 -16.05 5.68 -34.44 -0.20 -16.25 16 9 H 0.06 1.58 7.23 -52.48 -0.38 1.20 16 10 C 0.02 0.66 5.44 -17.82 -0.10 0.56 16 11 N -0.91 -26.95 13.65 55.43 0.76 -26.20 16 12 Si 1.07 24.74 29.91 -169.99 -5.08 19.66 16 13 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 N -0.52 -11.93 4.65 -240.80 -1.12 -13.05 16 17 C 0.06 1.42 8.46 60.06 0.51 1.93 16 18 C 0.05 1.08 5.02 -6.42 -0.03 1.05 16 19 C -0.10 -1.70 5.06 -29.33 -0.15 -1.85 16 20 C 0.10 1.71 2.54 -68.47 -0.17 1.54 16 21 H 0.04 0.80 6.98 -51.93 -0.36 0.44 16 22 C -0.15 -2.18 7.78 37.16 0.29 -1.89 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.06 6.88 -51.93 -0.36 0.70 16 28 H 0.02 0.32 7.54 -51.93 -0.39 -0.07 16 29 H 0.07 1.02 6.03 -51.93 -0.31 0.70 16 30 H 0.07 1.55 6.82 -51.93 -0.35 1.19 16 31 H 0.01 0.34 8.04 -51.93 -0.42 -0.08 16 32 H 0.27 8.02 6.29 -40.82 -0.26 7.76 16 33 H 0.07 1.54 6.77 -51.93 -0.35 1.19 16 34 H 0.03 0.52 7.80 -51.93 -0.41 0.12 16 35 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 36 H 0.05 0.94 7.64 -51.93 -0.40 0.54 16 37 H 0.02 0.40 7.37 -51.93 -0.38 0.01 16 38 H 0.07 1.30 8.12 -51.93 -0.42 0.87 16 39 H 0.05 0.78 7.97 -51.93 -0.41 0.36 16 40 H 0.05 0.73 6.67 -51.93 -0.35 0.38 16 41 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.06 0.82 7.15 -51.93 -0.37 0.45 16 LS Contribution 306.79 15.07 4.62 4.62 Total: -1.00 -28.70 306.79 -9.02 -37.72 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.44 Total: -0.60 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 0.21 Total: -10.82 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -1.32 Total: -50.58 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.70 -9.02 -37.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249869732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.915 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds