Wall clock time and date at job start Mon Mar 30 2020 03:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46987 * 2 1 4 4 N 1.46903 * 109.47315 * 185.12775 * 3 2 1 5 5 C 1.48195 * 110.99963 * 305.75083 * 4 3 2 6 6 C 1.53929 * 112.77545 * 191.67703 * 5 4 3 7 7 H 1.08997 * 108.87241 * 79.06347 * 6 5 4 8 8 C 1.50697 * 108.86620 * 197.58559 * 6 5 4 9 9 H 1.08005 * 119.99996 * 65.22754 * 8 6 5 10 10 C 1.37875 * 120.00156 * 245.22946 * 8 6 5 11 11 N 1.31512 * 120.00143 * 8.71128 * 10 8 6 12 12 Si 1.86804 * 119.99950 * 188.71758 * 10 8 6 13 13 H 1.48500 * 109.47135 * 269.99698 * 12 10 8 14 14 H 1.48500 * 109.47107 * 29.99764 * 12 10 8 15 15 H 1.48499 * 109.47081 * 149.99685 * 12 10 8 16 16 N 1.44262 * 112.54572 * 318.37284 * 6 5 4 17 17 C 1.46896 * 111.00054 * 217.13510 * 16 6 5 18 18 C 1.48105 * 109.97437 * 93.90337 * 16 6 5 19 19 C 1.46137 * 112.19985 * 279.71338 * 18 16 6 20 20 C 1.44248 * 111.00083 * 177.50027 * 4 3 2 21 21 H 1.08998 * 109.60905 * 99.93648 * 20 4 3 22 22 C 1.52999 * 109.61066 * 339.59545 * 20 4 3 23 23 H 1.09001 * 109.47218 * 59.99709 * 1 2 3 24 24 H 1.08993 * 109.46848 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46777 * 300.00173 * 1 2 3 26 26 H 1.08993 * 109.46909 * 240.00596 * 2 1 3 27 27 H 1.08991 * 109.47117 * 120.00155 * 2 1 3 28 28 H 1.09007 * 109.47346 * 65.12715 * 3 2 1 29 29 H 1.09005 * 109.47342 * 305.13087 * 3 2 1 30 30 H 1.09000 * 108.82253 * 70.82230 * 5 4 3 31 31 H 1.09002 * 108.81938 * 312.52549 * 5 4 3 32 32 H 0.97008 * 119.99620 * 355.41292 * 11 10 8 33 33 H 1.08998 * 109.47456 * 67.21239 * 17 16 6 34 34 H 1.08998 * 109.46974 * 187.21234 * 17 16 6 35 35 H 1.08999 * 109.47199 * 307.20471 * 17 16 6 36 36 H 1.09001 * 108.93508 * 159.00571 * 18 16 6 37 37 H 1.09001 * 108.86124 * 40.36582 * 18 16 6 38 38 H 1.09004 * 108.98928 * 300.24168 * 19 18 16 39 39 H 1.09001 * 108.99420 * 181.48965 * 19 18 16 40 40 H 1.09000 * 109.46680 * 63.19234 * 22 20 4 41 41 H 1.09005 * 109.47294 * 183.18784 * 22 20 4 42 42 H 1.08995 * 109.47356 * 303.19086 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4444 -0.1238 5 6 4.1266 0.6037 0.9257 6 6 5.6508 0.7983 1.0185 7 1 5.8561 1.7159 1.5697 8 6 6.2456 -0.3645 1.7703 9 1 6.1999 -1.3588 1.3511 10 6 6.8481 -0.1590 2.9933 11 7 6.7553 1.0125 3.5835 12 14 7.7965 -1.5448 3.8118 13 1 6.8785 -2.3304 4.6751 14 1 8.3759 -2.4307 2.7703 15 1 8.8889 -0.9749 4.6406 16 7 6.2773 0.8851 -0.2780 17 6 7.5860 0.2179 -0.2761 18 6 6.4052 2.3036 -0.6842 19 6 5.1565 2.8385 -1.2229 20 6 4.0156 2.7916 -0.1858 21 1 4.3956 3.0840 0.7931 22 6 2.8977 3.7467 -0.6088 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.7536 1.9292 0.9324 29 1 1.6036 1.9822 -0.8405 30 1 3.9185 -0.4436 0.7069 31 1 3.6808 0.8550 1.8881 32 1 6.3205 1.7513 3.1294 33 1 7.4465 -0.8553 -0.1468 34 1 8.0917 0.4071 -1.2229 35 1 8.1910 0.6070 0.5429 36 1 7.1822 2.3852 -1.4443 37 1 6.6973 2.8939 0.1844 38 1 4.8670 2.2529 -2.0955 39 1 5.3160 3.8726 -1.5284 40 1 2.1117 3.7431 0.1463 41 1 3.2998 4.7548 -0.7099 42 1 2.4851 3.4227 -1.5642 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249869732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:25 Heat of formation + Delta-G solvation = -8.005101 kcal Electronic energy + Delta-G solvation = -19036.073911 eV Core-core repulsion = 16436.338620 eV Total energy + Delta-G solvation = -2599.735291 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.75469 -37.96381 -35.67457 -34.38031 -32.99115 -30.66887 -29.41906 -26.71062 -26.59046 -25.08773 -23.82549 -22.35511 -21.30631 -20.23915 -18.59456 -17.40855 -16.65245 -16.53698 -16.22410 -15.67816 -15.42615 -15.13867 -14.91908 -14.10889 -13.92459 -13.82533 -13.68879 -13.24719 -13.05087 -12.84393 -12.77478 -12.68737 -12.58185 -12.17569 -12.01293 -11.96587 -11.90264 -11.69738 -11.52970 -11.34430 -11.28509 -10.76020 -10.42842 -9.04222 -8.84553 -8.68519 -6.38505 1.48212 1.56165 1.74244 2.49427 2.89891 3.18249 3.42220 3.85221 3.97823 4.09818 4.13938 4.29273 4.41560 4.47085 4.49913 4.53975 4.55658 4.65650 4.68278 4.77357 4.83605 4.90231 4.91545 4.95118 5.01648 5.04508 5.10648 5.18899 5.22868 5.31907 5.32310 5.43486 5.45684 5.48626 5.75166 6.04071 6.26886 6.43821 6.52788 6.64412 6.78486 7.41190 8.66829 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021784 B = 0.008622 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.049409 B = 3246.778447 C = 3960.074191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.058 3.942 4 N -0.541 5.541 5 C 0.110 3.890 6 C 0.192 3.808 7 H -0.016 1.016 8 C -0.595 4.595 9 H 0.051 0.949 10 C -0.025 4.025 11 N -0.937 5.937 12 Si 1.112 2.888 13 H -0.274 1.274 14 H -0.265 1.265 15 H -0.285 1.285 16 N -0.527 5.527 17 C 0.070 3.930 18 C 0.055 3.945 19 C -0.093 4.093 20 C 0.088 3.912 21 H 0.000 1.000 22 C -0.143 4.143 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.013 0.987 29 H 0.099 0.901 30 H 0.054 0.946 31 H -0.014 1.014 32 H 0.252 0.748 33 H 0.055 0.945 34 H 0.063 0.937 35 H -0.008 1.008 36 H 0.075 0.925 37 H -0.008 1.008 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 2.520 -9.608 12.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C -0.069 4.069 4 N -0.266 5.266 5 C -0.018 4.018 6 C 0.083 3.917 7 H 0.002 0.998 8 C -0.634 4.634 9 H 0.069 0.931 10 C -0.224 4.224 11 N -0.576 5.576 12 Si 0.933 3.067 13 H -0.200 1.200 14 H -0.190 1.190 15 H -0.211 1.211 16 N -0.252 5.252 17 C -0.079 4.079 18 C -0.073 4.073 19 C -0.131 4.131 20 C -0.021 4.021 21 H 0.019 0.981 22 C -0.201 4.201 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.004 0.996 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.011 0.989 36 H 0.094 0.906 37 H 0.011 0.989 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.110 1.689 -9.019 11.608 hybrid contribution -0.272 1.219 0.671 1.418 sum -7.382 2.908 -8.347 11.517 Atomic orbital electron populations 1.21671 0.93567 1.02290 1.02233 1.21560 0.97015 0.96232 1.01278 1.22369 0.87264 0.97368 0.99874 1.60716 1.04773 1.12640 1.48482 1.22234 0.94592 0.96306 0.88658 1.19198 0.91100 0.95124 0.86264 0.99808 1.22183 1.39497 0.94894 1.06870 0.93109 1.27266 0.96471 1.02786 0.95836 1.70964 1.44642 1.03217 1.38762 0.83016 0.75654 0.72393 0.75625 1.19991 1.18985 1.21084 1.61847 1.20952 1.12941 1.29418 1.21888 0.89223 0.99369 0.97382 1.21149 0.99192 0.88929 0.98029 1.20558 0.93156 1.00699 0.98714 1.21322 0.96376 0.88182 0.96241 0.98148 1.22085 0.97203 0.98621 1.02162 0.91219 0.91943 0.92953 0.91784 0.94502 0.96882 0.88290 0.92779 0.99629 0.93611 0.92578 0.91853 0.98910 0.90623 0.98925 0.90520 0.89639 0.92618 0.90891 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.91 71.98 0.71 -2.35 16 2 C -0.12 -3.63 5.35 30.60 0.16 -3.47 16 3 C 0.06 1.81 3.77 86.30 0.33 2.13 16 4 N -0.54 -20.62 4.23 -869.48 -3.68 -24.30 16 5 C 0.11 5.21 4.21 86.37 0.36 5.57 16 6 C 0.19 9.94 2.00 44.97 0.09 10.03 16 7 H -0.02 -0.92 4.09 -2.39 -0.01 -0.93 16 8 C -0.60 -33.28 5.68 25.60 0.15 -33.14 16 9 H 0.05 2.86 7.23 -2.91 -0.02 2.84 16 10 C -0.03 -1.43 5.44 84.65 0.46 -0.97 16 11 N -0.94 -57.97 13.65 21.45 0.29 -57.68 16 12 Si 1.11 50.44 29.91 68.60 2.05 52.49 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 14 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 15 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 16 N -0.53 -24.19 4.65 -915.77 -4.26 -28.45 16 17 C 0.07 3.08 8.46 127.69 1.08 4.16 16 18 C 0.05 2.15 5.02 83.96 0.42 2.57 16 19 C -0.09 -3.05 5.06 28.91 0.15 -2.91 16 20 C 0.09 3.10 2.54 45.84 0.12 3.21 16 21 H 0.00 0.02 6.98 -2.39 -0.02 0.00 16 22 C -0.14 -3.64 7.78 71.98 0.56 -3.08 16 23 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.04 1.26 6.88 -2.39 -0.02 1.24 16 28 H 0.01 0.43 7.54 -2.38 -0.02 0.41 16 29 H 0.10 2.54 6.03 -2.38 -0.01 2.53 16 30 H 0.05 2.64 6.82 -2.39 -0.02 2.62 16 31 H -0.01 -0.75 8.04 -2.39 -0.02 -0.77 16 32 H 0.25 16.06 6.29 -92.70 -0.58 15.48 16 33 H 0.06 2.57 6.77 -2.39 -0.02 2.55 16 34 H 0.06 2.32 7.80 -2.39 -0.02 2.31 16 35 H -0.01 -0.39 7.73 -2.39 -0.02 -0.41 16 36 H 0.08 2.59 7.64 -2.39 -0.02 2.57 16 37 H -0.01 -0.34 7.37 -2.39 -0.02 -0.35 16 38 H 0.08 2.51 8.12 -2.39 -0.02 2.49 16 39 H 0.09 2.26 7.97 -2.39 -0.02 2.24 16 40 H 0.05 1.39 6.67 -2.39 -0.02 1.37 16 41 H 0.07 1.59 8.10 -2.38 -0.02 1.57 16 42 H 0.08 1.77 7.15 -2.39 -0.02 1.76 16 Total: -1.00 -64.94 306.79 0.14 -64.80 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 1.15 Total: 11.35 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 4.59 Total: -18.22 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -7.64 Total: -110.42 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.05 Total: 52.49 kcal Total: -64.94 0.14 -64.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249869732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.794 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds