Wall clock time and date at job start Mon Mar 30 2020 03:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47331 * 2 1 4 4 N 1.46902 * 109.47102 * 180.02562 * 3 2 1 5 5 C 1.48068 * 110.99506 * 169.99977 * 4 3 2 6 6 C 1.50737 * 112.93587 * 84.35244 * 5 4 3 7 7 H 1.08996 * 109.56371 * 332.81031 * 6 5 4 8 8 C 1.53007 * 109.56009 * 212.48489 * 6 5 4 9 9 C 1.54510 * 108.94383 * 92.65010 * 6 5 4 10 10 N 1.40081 * 111.51781 * 283.98328 * 9 6 5 11 11 C 1.46893 * 111.00623 * 188.14190 * 10 9 6 12 12 C 1.47690 * 114.56723 * 61.44052 * 10 9 6 13 13 H 1.09001 * 109.73829 * 38.40505 * 12 10 9 14 14 C 1.50703 * 109.73643 * 159.05769 * 12 10 9 15 15 H 1.07993 * 120.00476 * 65.05048 * 14 12 10 16 16 C 1.37882 * 119.99411 * 245.05271 * 14 12 10 17 17 N 1.31514 * 119.99573 * 175.25811 * 16 14 12 18 18 Si 1.86798 * 120.00162 * 355.25878 * 16 14 12 19 19 H 1.48498 * 109.46919 * 275.35737 * 18 16 14 20 20 H 1.48497 * 109.47525 * 35.36220 * 18 16 14 21 21 H 1.48507 * 109.46993 * 155.36416 * 18 16 14 22 22 C 1.47742 * 110.99738 * 297.59270 * 4 3 2 23 23 H 1.09000 * 109.47237 * 300.00398 * 1 2 3 24 24 H 1.08999 * 109.47554 * 60.00161 * 1 2 3 25 25 H 1.08997 * 109.47182 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46714 * 239.99651 * 2 1 3 27 27 H 1.08994 * 109.47120 * 119.99955 * 2 1 3 28 28 H 1.09000 * 109.47285 * 59.99631 * 3 2 1 29 29 H 1.09011 * 109.46839 * 299.99986 * 3 2 1 30 30 H 1.08998 * 108.79651 * 323.45157 * 5 4 3 31 31 H 1.09005 * 108.69699 * 205.17735 * 5 4 3 32 32 H 1.08998 * 109.47317 * 300.54403 * 8 6 5 33 33 H 1.09001 * 109.46373 * 60.54290 * 8 6 5 34 34 H 1.09004 * 109.47266 * 180.53941 * 8 6 5 35 35 H 1.09002 * 109.07725 * 163.45768 * 9 6 5 36 36 H 1.08999 * 109.07206 * 44.50199 * 9 6 5 37 37 H 1.08995 * 109.46979 * 286.11857 * 11 10 9 38 38 H 1.08997 * 109.47082 * 46.11404 * 11 10 9 39 39 H 1.08993 * 109.47383 * 166.11671 * 11 10 9 40 40 H 0.97001 * 119.99947 * 180.02562 * 17 16 14 41 41 H 1.09002 * 108.98643 * 72.18348 * 22 4 3 42 42 H 1.08992 * 108.99745 * 313.44109 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0395 2.8038 -0.2407 6 6 4.1230 3.6318 1.0161 7 1 3.3732 3.2894 1.7293 8 6 3.8765 5.1034 0.6774 9 6 5.5319 3.4713 1.6299 10 7 5.6730 2.2368 2.2766 11 6 6.9396 2.1724 3.0178 12 6 5.5141 1.0611 1.3970 13 1 5.9713 1.2618 0.4281 14 6 6.1688 -0.1399 2.0296 15 1 5.7814 -0.5418 2.9541 16 6 7.2625 -0.7255 1.4279 17 7 7.8908 -1.7142 2.0257 18 14 7.8516 -0.1147 -0.2361 19 1 7.0731 -0.7800 -1.3115 20 1 7.6575 1.3550 -0.3211 21 1 9.2929 -0.4339 -0.3987 22 6 4.0389 0.8033 1.2215 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6767 1.9564 0.8899 29 1 1.6766 1.9563 -0.8901 30 1 3.3911 3.3126 -0.9540 31 1 5.0369 2.7191 -0.6722 32 1 4.6248 5.4416 -0.0394 33 1 2.8823 5.2149 0.2446 34 1 3.9467 5.7020 1.5856 35 1 5.7000 4.2720 2.3502 36 1 6.2762 3.5451 0.8370 37 1 7.7654 2.0538 2.3163 38 1 7.0751 3.0926 3.5862 39 1 6.9182 1.3233 3.7008 40 1 8.6605 -2.1260 1.6027 41 1 3.8715 -0.2720 1.1605 42 1 3.5049 1.1954 2.0870 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249957329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:28 Heat of formation + Delta-G solvation = 4.620052 kcal Electronic energy + Delta-G solvation = -19007.302419 eV Core-core repulsion = 16408.114596 eV Total energy + Delta-G solvation = -2599.187823 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.31464 -36.04649 -34.23289 -32.70974 -31.94600 -29.08718 -26.83622 -26.34442 -24.99327 -23.15649 -22.55549 -20.85486 -19.58336 -18.68547 -17.16438 -15.61253 -15.22231 -14.94466 -14.59218 -14.26003 -13.78335 -13.57136 -13.07904 -12.90032 -12.65135 -12.48817 -12.14596 -12.02579 -11.56872 -11.52107 -11.38862 -11.24771 -11.14122 -10.87222 -10.68459 -10.50405 -10.36032 -10.08264 -9.89119 -9.81559 -9.69498 -9.14062 -8.60301 -7.57110 -7.08115 -6.14785 -4.14403 3.27338 3.34025 3.37800 4.36994 4.42389 4.82006 5.09812 5.16168 5.24307 5.31410 5.34740 5.54873 5.61427 5.76007 5.78717 5.89100 5.90767 5.97892 6.00927 6.03804 6.16255 6.21888 6.26991 6.36454 6.39626 6.42842 6.46123 6.55662 6.59482 6.69299 6.75338 6.78485 7.17841 7.31322 7.51257 7.72577 7.79360 8.23256 8.29566 8.76435 8.93188 9.49023 10.97378 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.010209 C = 0.007865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.139429 B = 2741.930470 C = 3559.311626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.063 3.937 4 N -0.553 5.553 5 C 0.064 3.936 6 C -0.121 4.121 7 H 0.076 0.924 8 C -0.137 4.137 9 C 0.084 3.916 10 N -0.567 5.567 11 C 0.062 3.938 12 C 0.181 3.819 13 H 0.028 0.972 14 C -0.503 4.503 15 H 0.079 0.921 16 C 0.079 3.921 17 N -0.892 5.892 18 Si 0.876 3.124 19 H -0.271 1.271 20 H -0.271 1.271 21 H -0.291 1.291 22 C 0.077 3.923 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.025 0.975 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.005 0.995 37 H 0.014 0.986 38 H 0.031 0.969 39 H 0.080 0.920 40 H 0.265 0.735 41 H 0.078 0.922 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.402 9.129 -3.862 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.066 4.066 4 N -0.277 5.277 5 C -0.064 4.064 6 C -0.142 4.142 7 H 0.094 0.906 8 C -0.195 4.195 9 C -0.046 4.046 10 N -0.292 5.292 11 C -0.085 4.085 12 C 0.077 3.923 13 H 0.045 0.955 14 C -0.542 4.542 15 H 0.097 0.903 16 C -0.125 4.125 17 N -0.529 5.529 18 Si 0.704 3.296 19 H -0.196 1.196 20 H -0.197 1.197 21 H -0.217 1.217 22 C -0.050 4.050 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.023 0.977 37 H 0.033 0.967 38 H 0.050 0.950 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.447 8.678 -3.954 13.423 hybrid contribution 0.809 0.859 -0.803 1.427 sum -8.638 9.537 -4.758 13.719 Atomic orbital electron populations 1.21729 0.96304 1.01331 1.01221 1.21554 0.94586 0.96947 1.03141 1.22069 0.88395 0.96625 0.99484 1.62297 1.06081 1.18864 1.40455 1.21966 1.00576 0.87902 0.95987 1.21613 0.98639 0.95263 0.98648 0.90582 1.21749 1.00827 0.95815 1.01127 1.20967 0.94332 0.93168 0.96180 1.59452 1.35292 1.02131 1.32346 1.21900 0.89208 0.99948 0.97436 1.19561 0.92347 0.88634 0.91808 0.95467 1.20788 1.12929 1.10263 1.10245 0.90299 1.25044 0.95684 0.94739 0.97025 1.69891 1.20430 1.24450 1.38124 0.86900 0.77662 0.79467 0.85601 1.19613 1.19653 1.21711 1.22205 0.96569 0.98559 0.87693 0.93122 0.93152 0.92828 0.91351 0.91409 0.95646 0.92007 0.92222 0.91743 0.92930 0.93044 0.92866 0.92784 0.97689 0.96709 0.95016 0.90130 0.92508 0.90337 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.33 16 2 C -0.12 -1.79 5.77 -26.73 -0.15 -1.94 16 3 C 0.06 0.95 4.84 -3.82 -0.02 0.94 16 4 N -0.55 -10.26 4.76 -235.69 -1.12 -11.38 16 5 C 0.06 1.09 4.71 -4.31 -0.02 1.07 16 6 C -0.12 -1.97 2.44 -90.96 -0.22 -2.19 16 7 H 0.08 1.33 6.80 -51.93 -0.35 0.98 16 8 C -0.14 -1.74 8.91 37.16 0.33 -1.41 16 9 C 0.08 1.57 4.33 -6.56 -0.03 1.54 16 10 N -0.57 -12.31 4.20 -241.37 -1.01 -13.32 16 11 C 0.06 1.35 8.65 60.06 0.52 1.87 16 12 C 0.18 4.29 1.80 -69.54 -0.13 4.16 16 13 H 0.03 0.69 3.19 -51.93 -0.17 0.53 16 14 C -0.50 -13.67 6.41 -34.44 -0.22 -13.89 16 15 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 18 Si 0.88 21.90 27.23 -169.99 -4.63 17.27 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.71 6.41 56.52 0.36 -6.35 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 C 0.08 1.63 3.96 -4.47 -0.02 1.61 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.07 6.74 -51.93 -0.35 0.72 16 28 H 0.03 0.39 7.74 -51.93 -0.40 -0.01 16 29 H 0.06 0.85 7.80 -51.92 -0.40 0.45 16 30 H 0.06 0.88 7.19 -51.93 -0.37 0.51 16 31 H 0.06 1.24 6.52 -51.93 -0.34 0.90 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.93 7.68 -51.93 -0.40 0.53 16 36 H 0.01 0.11 7.59 -51.93 -0.39 -0.29 16 37 H 0.01 0.33 8.12 -51.93 -0.42 -0.09 16 38 H 0.03 0.58 7.77 -51.93 -0.40 0.18 16 39 H 0.08 1.89 7.00 -51.93 -0.36 1.53 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.08 1.77 6.60 -51.93 -0.34 1.42 16 42 H 0.03 0.68 7.02 -51.93 -0.36 0.31 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -28.49 309.05 -8.65 -37.14 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.63 Total: -1.24 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 0.31 Total: -7.47 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -1.36 Total: -50.36 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.63 Total: 17.27 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.49 -8.65 -37.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249957329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.758 kcal (2) G-P(sol) polarization free energy of solvation -28.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds