Wall clock time and date at job start Mon Mar 30 2020 03:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47331 * 2 1 4 4 N 1.46902 * 109.47102 * 180.02562 * 3 2 1 5 5 C 1.48068 * 110.99506 * 169.99977 * 4 3 2 6 6 C 1.50737 * 112.93587 * 84.35244 * 5 4 3 7 7 H 1.08996 * 109.56371 * 332.81031 * 6 5 4 8 8 C 1.53007 * 109.56009 * 212.48489 * 6 5 4 9 9 C 1.54510 * 108.94383 * 92.65010 * 6 5 4 10 10 N 1.40081 * 111.51781 * 283.98328 * 9 6 5 11 11 C 1.46893 * 111.00623 * 188.14190 * 10 9 6 12 12 C 1.47690 * 114.56723 * 61.44052 * 10 9 6 13 13 H 1.09001 * 109.73829 * 38.40505 * 12 10 9 14 14 C 1.50703 * 109.73643 * 159.05769 * 12 10 9 15 15 H 1.07993 * 120.00476 * 65.05048 * 14 12 10 16 16 C 1.37882 * 119.99411 * 245.05271 * 14 12 10 17 17 N 1.31514 * 119.99573 * 175.25811 * 16 14 12 18 18 Si 1.86798 * 120.00162 * 355.25878 * 16 14 12 19 19 H 1.48498 * 109.46919 * 275.35737 * 18 16 14 20 20 H 1.48497 * 109.47525 * 35.36220 * 18 16 14 21 21 H 1.48507 * 109.46993 * 155.36416 * 18 16 14 22 22 C 1.47742 * 110.99738 * 297.59270 * 4 3 2 23 23 H 1.09000 * 109.47237 * 300.00398 * 1 2 3 24 24 H 1.08999 * 109.47554 * 60.00161 * 1 2 3 25 25 H 1.08997 * 109.47182 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46714 * 239.99651 * 2 1 3 27 27 H 1.08994 * 109.47120 * 119.99955 * 2 1 3 28 28 H 1.09000 * 109.47285 * 59.99631 * 3 2 1 29 29 H 1.09011 * 109.46839 * 299.99986 * 3 2 1 30 30 H 1.08998 * 108.79651 * 323.45157 * 5 4 3 31 31 H 1.09005 * 108.69699 * 205.17735 * 5 4 3 32 32 H 1.08998 * 109.47317 * 300.54403 * 8 6 5 33 33 H 1.09001 * 109.46373 * 60.54290 * 8 6 5 34 34 H 1.09004 * 109.47266 * 180.53941 * 8 6 5 35 35 H 1.09002 * 109.07725 * 163.45768 * 9 6 5 36 36 H 1.08999 * 109.07206 * 44.50199 * 9 6 5 37 37 H 1.08995 * 109.46979 * 286.11857 * 11 10 9 38 38 H 1.08997 * 109.47082 * 46.11404 * 11 10 9 39 39 H 1.08993 * 109.47383 * 166.11671 * 11 10 9 40 40 H 0.97001 * 119.99947 * 180.02562 * 17 16 14 41 41 H 1.09002 * 108.98643 * 72.18348 * 22 4 3 42 42 H 1.08992 * 108.99745 * 313.44109 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0395 2.8038 -0.2407 6 6 4.1230 3.6318 1.0161 7 1 3.3732 3.2894 1.7293 8 6 3.8765 5.1034 0.6774 9 6 5.5319 3.4713 1.6299 10 7 5.6730 2.2368 2.2766 11 6 6.9396 2.1724 3.0178 12 6 5.5141 1.0611 1.3970 13 1 5.9713 1.2618 0.4281 14 6 6.1688 -0.1399 2.0296 15 1 5.7814 -0.5418 2.9541 16 6 7.2625 -0.7255 1.4279 17 7 7.8908 -1.7142 2.0257 18 14 7.8516 -0.1147 -0.2361 19 1 7.0731 -0.7800 -1.3115 20 1 7.6575 1.3550 -0.3211 21 1 9.2929 -0.4339 -0.3987 22 6 4.0389 0.8033 1.2215 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6767 1.9564 0.8899 29 1 1.6766 1.9563 -0.8901 30 1 3.3911 3.3126 -0.9540 31 1 5.0369 2.7191 -0.6722 32 1 4.6248 5.4416 -0.0394 33 1 2.8823 5.2149 0.2446 34 1 3.9467 5.7020 1.5856 35 1 5.7000 4.2720 2.3502 36 1 6.2762 3.5451 0.8370 37 1 7.7654 2.0538 2.3163 38 1 7.0751 3.0926 3.5862 39 1 6.9182 1.3233 3.7008 40 1 8.6605 -2.1260 1.6027 41 1 3.8715 -0.2720 1.1605 42 1 3.5049 1.1954 2.0870 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249957329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:28 Heat of formation + Delta-G solvation = -14.928322 kcal Electronic energy + Delta-G solvation = -19008.150100 eV Core-core repulsion = 16408.114596 eV Total energy + Delta-G solvation = -2600.035504 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.87573 -37.53492 -35.74849 -34.39514 -33.56090 -30.76202 -28.41663 -27.63200 -26.62412 -24.87966 -23.91865 -22.08323 -21.22047 -20.25607 -19.25377 -17.06644 -16.95228 -16.40918 -16.06400 -15.83027 -15.49652 -15.04864 -14.68660 -14.41162 -14.07117 -13.91510 -13.46706 -13.38307 -13.20850 -13.07198 -12.87556 -12.69133 -12.49502 -12.39245 -11.98570 -11.94033 -11.85531 -11.82967 -11.53986 -11.44385 -11.22553 -11.10042 -10.76404 -9.02460 -8.86835 -8.35200 -6.37199 1.24695 1.29008 1.35006 2.25863 2.90434 3.03047 3.43610 3.81634 3.94289 4.05617 4.22799 4.25779 4.44153 4.51017 4.52665 4.63823 4.67750 4.69737 4.72232 4.75512 4.80163 4.84339 4.88801 4.92787 4.96408 5.03671 5.13523 5.23317 5.27750 5.32502 5.33894 5.42311 5.45739 5.48759 5.59747 6.14935 6.24231 6.34106 6.41885 6.68627 6.97751 7.28609 8.80888 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018561 B = 0.010209 C = 0.007865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.139429 B = 2741.930470 C = 3559.311626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.065 3.935 4 N -0.567 5.567 5 C 0.062 3.938 6 C -0.113 4.113 7 H 0.065 0.935 8 C -0.129 4.129 9 C 0.077 3.923 10 N -0.570 5.570 11 C 0.068 3.932 12 C 0.187 3.813 13 H 0.017 0.983 14 C -0.498 4.498 15 H 0.039 0.961 16 C 0.031 3.969 17 N -0.935 5.935 18 Si 0.932 3.068 19 H -0.266 1.266 20 H -0.266 1.266 21 H -0.285 1.285 22 C 0.094 3.906 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.029 0.971 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.076 0.924 36 H -0.005 1.005 37 H -0.004 1.004 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.267 0.733 41 H 0.055 0.945 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.987 11.705 -5.360 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.062 4.062 4 N -0.291 5.291 5 C -0.065 4.065 6 C -0.133 4.133 7 H 0.084 0.916 8 C -0.187 4.187 9 C -0.053 4.053 10 N -0.295 5.295 11 C -0.080 4.080 12 C 0.081 3.919 13 H 0.034 0.966 14 C -0.537 4.537 15 H 0.058 0.942 16 C -0.169 4.169 17 N -0.574 5.574 18 Si 0.758 3.242 19 H -0.191 1.191 20 H -0.191 1.191 21 H -0.211 1.211 22 C -0.034 4.034 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.013 0.987 37 H 0.015 0.985 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -11.050 11.276 -5.456 16.704 hybrid contribution 1.262 0.065 -0.266 1.291 sum -9.788 11.341 -5.722 16.037 Atomic orbital electron populations 1.21667 0.93701 1.02188 1.02263 1.21544 0.96845 0.96295 1.01568 1.22156 0.86085 0.97273 1.00728 1.62192 1.08289 1.20129 1.38476 1.22034 1.00051 0.87396 0.97064 1.21553 0.96395 0.97764 0.97607 0.91631 1.21694 1.02187 0.92812 1.01994 1.21161 0.95889 0.91867 0.96353 1.59397 1.35053 1.02863 1.32209 1.21824 0.88735 1.00586 0.96820 1.19396 0.93462 0.88004 0.90999 0.96574 1.20888 1.12741 1.11362 1.08737 0.94245 1.25694 0.95989 0.94982 1.00189 1.70008 1.21398 1.26141 1.39866 0.85990 0.77401 0.79126 0.81649 1.19127 1.19121 1.21090 1.21775 0.94966 0.97631 0.89057 0.92595 0.91510 0.92176 0.92225 0.93774 0.95258 0.89540 0.89083 0.94012 0.92246 0.91075 0.91818 0.90594 0.98750 0.98517 0.91362 0.93053 0.92361 0.92617 0.95487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.91 71.98 0.71 -2.16 16 2 C -0.12 -3.44 5.77 30.59 0.18 -3.26 16 3 C 0.07 1.83 4.84 86.30 0.42 2.25 16 4 N -0.57 -20.22 4.76 -899.57 -4.28 -24.50 16 5 C 0.06 1.96 4.71 85.34 0.40 2.37 16 6 C -0.11 -3.34 2.44 -11.01 -0.03 -3.37 16 7 H 0.07 2.12 6.80 -2.39 -0.02 2.10 16 8 C -0.13 -2.71 8.91 71.98 0.64 -2.07 16 9 C 0.08 2.73 4.33 88.05 0.38 3.11 16 10 N -0.57 -24.55 4.20 -917.56 -3.85 -28.40 16 11 C 0.07 2.95 8.65 127.69 1.10 4.06 16 12 C 0.19 8.96 1.80 43.30 0.08 9.03 16 13 H 0.02 0.83 3.19 -2.39 -0.01 0.83 16 14 C -0.50 -28.20 6.41 25.60 0.16 -28.04 16 15 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 16 C 0.03 1.79 5.47 84.66 0.46 2.25 16 17 N -0.93 -57.43 13.96 21.45 0.30 -57.13 16 18 Si 0.93 45.92 27.23 68.60 1.87 47.79 16 19 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.27 -12.79 6.41 99.48 0.64 -12.15 16 21 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 22 C 0.09 4.01 3.96 85.42 0.34 4.34 16 23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.04 1.41 6.74 -2.39 -0.02 1.39 16 28 H 0.03 0.82 7.74 -2.39 -0.02 0.80 16 29 H 0.09 2.04 7.80 -2.38 -0.02 2.02 16 30 H 0.09 2.31 7.19 -2.39 -0.02 2.30 16 31 H 0.04 1.52 6.52 -2.38 -0.02 1.50 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 2.37 7.68 -2.39 -0.02 2.35 16 36 H -0.01 -0.21 7.59 -2.39 -0.02 -0.23 16 37 H 0.00 -0.18 8.12 -2.39 -0.02 -0.20 16 38 H 0.07 2.43 7.77 -2.39 -0.02 2.41 16 39 H 0.05 2.49 7.00 -2.39 -0.02 2.48 16 40 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 41 H 0.06 2.60 6.60 -2.39 -0.02 2.59 16 42 H 0.03 1.16 7.02 -2.39 -0.02 1.15 16 Total: -1.00 -63.46 309.05 -0.22 -63.68 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.89 Total: 10.05 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 4.85 Total: -11.49 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -7.83 Total: -110.03 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.87 Total: 47.79 kcal Total: -63.46 -0.22 -63.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249957329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.751 kcal (2) G-P(sol) polarization free energy of solvation -63.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds