Wall clock time and date at job start Mon Mar 30 2020 03:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47122 * 2 1 4 4 N 1.46903 * 109.47057 * 180.02562 * 3 2 1 5 5 C 1.48059 * 110.99954 * 302.91745 * 4 3 2 6 6 C 1.53689 * 112.47198 * 192.19871 * 5 4 3 7 7 C 1.50799 * 112.10450 * 318.54963 * 6 5 4 8 8 H 1.08999 * 109.62818 * 332.85538 * 7 6 5 9 9 C 1.52990 * 109.63950 * 212.25372 * 7 6 5 10 10 N 1.47917 * 108.49400 * 92.54885 * 7 6 5 11 11 C 1.46902 * 110.99512 * 153.79435 * 10 7 6 12 12 C 1.40009 * 114.06762 * 280.08072 * 10 7 6 13 13 C 1.44576 * 110.99865 * 175.22980 * 4 3 2 14 14 H 1.09006 * 109.67565 * 100.47612 * 13 4 3 15 15 C 1.50697 * 109.57806 * 340.15831 * 13 4 3 16 16 H 1.08000 * 119.99683 * 295.56491 * 15 13 4 17 17 C 1.37875 * 120.00042 * 115.55797 * 15 13 4 18 18 N 1.31518 * 120.00015 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99801 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46860 * 60.00325 * 19 17 15 21 21 H 1.48496 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47394 * 300.00239 * 19 17 15 23 23 H 1.09003 * 109.47056 * 300.00100 * 1 2 3 24 24 H 1.09002 * 109.47124 * 60.00021 * 1 2 3 25 25 H 1.09001 * 109.47227 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47056 * 239.99900 * 2 1 3 27 27 H 1.08998 * 109.46630 * 119.99918 * 2 1 3 28 28 H 1.08997 * 109.47733 * 59.99549 * 3 2 1 29 29 H 1.08998 * 109.47301 * 299.99507 * 3 2 1 30 30 H 1.08999 * 108.88329 * 312.97085 * 5 4 3 31 31 H 1.09001 * 108.87974 * 71.52322 * 5 4 3 32 32 H 1.09000 * 108.95732 * 79.23123 * 6 5 4 33 33 H 1.09002 * 108.95518 * 197.87709 * 6 5 4 34 34 H 1.09005 * 109.47314 * 300.99507 * 9 7 6 35 35 H 1.09000 * 109.47267 * 60.99351 * 9 7 6 36 36 H 1.08999 * 109.47384 * 180.99452 * 9 7 6 37 37 H 1.09002 * 109.46964 * 184.01500 * 11 10 7 38 38 H 1.08997 * 109.47384 * 64.02040 * 11 10 7 39 39 H 1.08994 * 109.47393 * 304.01268 * 11 10 7 40 40 H 1.08998 * 108.95851 * 182.47904 * 12 10 7 41 41 H 1.09005 * 108.96005 * 301.22351 * 12 10 7 42 42 H 0.97006 * 119.99508 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0401 0.6911 1.1594 6 6 5.5466 0.9152 1.3647 7 6 6.3032 0.9155 0.0602 8 1 5.7703 0.3093 -0.6723 9 6 7.7069 0.3480 0.2798 10 7 6.4010 2.3094 -0.4251 11 6 7.5801 2.4864 -1.2833 12 6 5.2436 2.7753 -1.0604 13 6 4.0271 2.7875 -0.1129 14 1 4.3332 3.1461 0.8699 15 6 2.9609 3.6943 -0.6716 16 1 2.5909 3.5388 -1.6742 17 6 2.4578 4.7222 0.0973 18 7 2.9087 4.9117 1.3182 19 14 1.1368 5.8465 -0.5955 20 1 -0.0612 5.0434 -0.9490 21 1 0.7689 6.8636 0.4220 22 1 1.6529 6.5267 -1.8104 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.5106 1.0085 2.0577 31 1 3.8613 -0.3726 1.0025 32 1 5.6975 1.8735 1.8618 33 1 5.9391 0.1223 2.0013 34 1 8.2318 0.9527 1.0194 35 1 7.6317 -0.6790 0.6373 36 1 8.2573 0.3658 -0.6609 37 1 7.6680 3.5348 -1.5683 38 1 7.4730 1.8743 -2.1788 39 1 8.4743 2.1816 -0.7396 40 1 5.4213 3.7883 -1.4216 41 1 5.0222 2.1303 -1.9107 42 1 2.5550 5.6351 1.8590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249961149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:28 Heat of formation + Delta-G solvation = 9.129683 kcal Electronic energy + Delta-G solvation = -19042.329568 eV Core-core repulsion = 16443.337297 eV Total energy + Delta-G solvation = -2598.992271 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.94677 -36.16680 -33.33603 -32.70837 -31.64037 -28.50588 -28.13822 -25.39920 -24.66600 -23.25595 -22.25220 -20.48721 -19.22482 -18.51350 -16.48691 -15.38218 -15.05846 -14.58729 -14.38885 -14.31703 -13.70167 -13.54720 -13.06254 -12.77890 -12.37400 -12.09353 -11.87970 -11.65660 -11.48936 -11.20848 -11.11567 -11.03918 -10.82476 -10.76190 -10.54584 -10.31183 -10.19368 -10.15091 -9.71352 -9.51591 -9.34321 -8.88445 -8.56411 -7.32845 -6.74663 -6.06108 -4.09239 3.28839 3.34254 3.36557 4.37396 4.72672 5.04236 5.34432 5.41919 5.49981 5.65024 5.71703 5.80785 5.83777 5.94044 5.95065 6.04399 6.12457 6.19436 6.22624 6.34642 6.37708 6.40231 6.49839 6.54481 6.62637 6.69093 6.73063 6.74380 6.81829 7.02100 7.05660 7.28350 7.47554 7.70489 7.81498 7.98367 8.05586 8.30984 8.64749 8.89168 9.08988 9.54294 11.01716 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.010128 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.122527 B = 2764.018592 C = 3786.600055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.089 3.911 4 N -0.554 5.554 5 C 0.065 3.935 6 C -0.112 4.112 7 C 0.099 3.901 8 H 0.050 0.950 9 C -0.150 4.150 10 N -0.548 5.548 11 C 0.028 3.972 12 C 0.087 3.913 13 C 0.201 3.799 14 H 0.062 0.938 15 C -0.513 4.513 16 H 0.056 0.944 17 C 0.070 3.930 18 N -0.887 5.887 19 Si 0.890 3.110 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.276 1.276 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.026 0.974 29 H 0.082 0.918 30 H 0.021 0.979 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.013 0.987 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.004 0.996 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 -8.095 -1.354 8.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.038 4.038 4 N -0.279 5.279 5 C -0.063 4.063 6 C -0.150 4.150 7 C -0.009 4.009 8 H 0.068 0.932 9 C -0.208 4.208 10 N -0.273 5.273 11 C -0.120 4.120 12 C -0.042 4.042 13 C 0.095 3.905 14 H 0.080 0.920 15 C -0.553 4.553 16 H 0.074 0.926 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.717 3.283 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.101 0.899 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.032 0.968 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.022 0.978 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.871 -7.918 -1.189 8.893 hybrid contribution -1.112 0.663 -0.302 1.330 sum 2.758 -7.254 -1.491 7.903 Atomic orbital electron populations 1.21706 0.96839 1.00244 1.01662 1.21725 0.94574 0.99383 1.00940 1.21746 0.87890 0.92373 1.01827 1.61165 1.06915 1.20750 1.39107 1.22245 0.93988 0.97324 0.92750 1.21436 0.94672 1.02046 0.96839 1.21150 0.94402 0.88417 0.96886 0.93172 1.22094 0.97215 1.00071 1.01417 1.59412 1.04683 1.20912 1.42279 1.22378 0.94217 1.00625 0.94738 1.21211 0.89629 0.97528 0.95867 1.19246 0.90734 0.83596 0.96922 0.91993 1.20981 1.20994 1.12981 1.00325 0.92619 1.24972 0.96492 0.97146 0.94768 1.69914 1.42535 1.31407 1.08577 0.86693 0.82239 0.80552 0.78793 1.20092 1.21318 1.20123 0.93174 0.92920 0.93765 0.92461 0.93248 0.95564 0.89945 0.96091 0.93268 0.90869 0.92630 0.92245 0.92838 0.92849 0.92325 0.96824 0.91902 0.92098 0.97756 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.13 -2.26 5.62 -26.73 -0.15 -2.41 16 3 C 0.09 1.95 3.98 -3.83 -0.02 1.93 16 4 N -0.55 -12.36 4.00 -227.65 -0.91 -13.28 16 5 C 0.06 1.29 4.62 -2.83 -0.01 1.28 16 6 C -0.11 -2.05 4.92 -27.48 -0.14 -2.19 16 7 C 0.10 1.76 2.44 -68.26 -0.17 1.59 16 8 H 0.05 0.97 7.57 -51.93 -0.39 0.57 16 9 C -0.15 -2.10 7.77 37.15 0.29 -1.81 16 10 N -0.55 -10.86 4.28 -240.03 -1.03 -11.89 16 11 C 0.03 0.47 8.44 60.07 0.51 0.97 16 12 C 0.09 1.99 4.43 -6.75 -0.03 1.96 16 13 C 0.20 5.03 2.29 -69.48 -0.16 4.87 16 14 H 0.06 1.77 5.73 -51.93 -0.30 1.47 16 15 C -0.51 -13.71 5.68 -34.44 -0.20 -13.90 16 16 H 0.06 1.50 7.37 -52.49 -0.39 1.11 16 17 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 18 N -0.89 -25.39 12.61 55.43 0.70 -24.69 16 19 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.84 6.62 -51.93 -0.34 0.50 16 28 H 0.03 0.64 8.12 -51.93 -0.42 0.22 16 29 H 0.08 1.93 6.23 -51.93 -0.32 1.61 16 30 H 0.02 0.45 8.03 -51.93 -0.42 0.03 16 31 H 0.05 0.89 6.94 -51.93 -0.36 0.53 16 32 H 0.07 1.54 7.23 -51.93 -0.38 1.16 16 33 H 0.06 0.86 7.72 -51.93 -0.40 0.46 16 34 H 0.06 0.82 8.03 -51.93 -0.42 0.41 16 35 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 36 H 0.05 0.69 6.48 -51.93 -0.34 0.36 16 37 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.06 0.90 6.06 -51.93 -0.31 0.58 16 40 H 0.06 1.45 7.74 -51.93 -0.40 1.05 16 41 H 0.00 0.10 8.06 -51.93 -0.42 -0.32 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 310.39 15.07 4.68 4.68 Total: -1.00 -27.75 310.39 -9.08 -36.83 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.69 Total: 0.16 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 0.20 Total: -7.81 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -1.24 Total: -49.86 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.75 -9.08 -36.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249961149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.959 kcal (2) G-P(sol) polarization free energy of solvation -27.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds