Wall clock time and date at job start Mon Mar 30 2020 03:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47122 * 2 1 4 4 N 1.46903 * 109.47057 * 180.02562 * 3 2 1 5 5 C 1.48059 * 110.99954 * 302.91745 * 4 3 2 6 6 C 1.53689 * 112.47198 * 192.19871 * 5 4 3 7 7 C 1.50799 * 112.10450 * 318.54963 * 6 5 4 8 8 H 1.08999 * 109.62818 * 332.85538 * 7 6 5 9 9 C 1.52990 * 109.63950 * 212.25372 * 7 6 5 10 10 N 1.47917 * 108.49400 * 92.54885 * 7 6 5 11 11 C 1.46902 * 110.99512 * 153.79435 * 10 7 6 12 12 C 1.40009 * 114.06762 * 280.08072 * 10 7 6 13 13 C 1.44576 * 110.99865 * 175.22980 * 4 3 2 14 14 H 1.09006 * 109.67565 * 100.47612 * 13 4 3 15 15 C 1.50697 * 109.57806 * 340.15831 * 13 4 3 16 16 H 1.08000 * 119.99683 * 295.56491 * 15 13 4 17 17 C 1.37875 * 120.00042 * 115.55797 * 15 13 4 18 18 N 1.31518 * 120.00015 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99801 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46860 * 60.00325 * 19 17 15 21 21 H 1.48496 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47394 * 300.00239 * 19 17 15 23 23 H 1.09003 * 109.47056 * 300.00100 * 1 2 3 24 24 H 1.09002 * 109.47124 * 60.00021 * 1 2 3 25 25 H 1.09001 * 109.47227 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47056 * 239.99900 * 2 1 3 27 27 H 1.08998 * 109.46630 * 119.99918 * 2 1 3 28 28 H 1.08997 * 109.47733 * 59.99549 * 3 2 1 29 29 H 1.08998 * 109.47301 * 299.99507 * 3 2 1 30 30 H 1.08999 * 108.88329 * 312.97085 * 5 4 3 31 31 H 1.09001 * 108.87974 * 71.52322 * 5 4 3 32 32 H 1.09000 * 108.95732 * 79.23123 * 6 5 4 33 33 H 1.09002 * 108.95518 * 197.87709 * 6 5 4 34 34 H 1.09005 * 109.47314 * 300.99507 * 9 7 6 35 35 H 1.09000 * 109.47267 * 60.99351 * 9 7 6 36 36 H 1.08999 * 109.47384 * 180.99452 * 9 7 6 37 37 H 1.09002 * 109.46964 * 184.01500 * 11 10 7 38 38 H 1.08997 * 109.47384 * 64.02040 * 11 10 7 39 39 H 1.08994 * 109.47393 * 304.01268 * 11 10 7 40 40 H 1.08998 * 108.95851 * 182.47904 * 12 10 7 41 41 H 1.09005 * 108.96005 * 301.22351 * 12 10 7 42 42 H 0.97006 * 119.99508 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0401 0.6911 1.1594 6 6 5.5466 0.9152 1.3647 7 6 6.3032 0.9155 0.0602 8 1 5.7703 0.3093 -0.6723 9 6 7.7069 0.3480 0.2798 10 7 6.4010 2.3094 -0.4251 11 6 7.5801 2.4864 -1.2833 12 6 5.2436 2.7753 -1.0604 13 6 4.0271 2.7875 -0.1129 14 1 4.3332 3.1461 0.8699 15 6 2.9609 3.6943 -0.6716 16 1 2.5909 3.5388 -1.6742 17 6 2.4578 4.7222 0.0973 18 7 2.9087 4.9117 1.3182 19 14 1.1368 5.8465 -0.5955 20 1 -0.0612 5.0434 -0.9490 21 1 0.7689 6.8636 0.4220 22 1 1.6529 6.5267 -1.8104 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.5106 1.0085 2.0577 31 1 3.8613 -0.3726 1.0025 32 1 5.6975 1.8735 1.8618 33 1 5.9391 0.1223 2.0013 34 1 8.2318 0.9527 1.0194 35 1 7.6317 -0.6790 0.6373 36 1 8.2573 0.3658 -0.6609 37 1 7.6680 3.5348 -1.5683 38 1 7.4730 1.8743 -2.1788 39 1 8.4743 2.1816 -0.7396 40 1 5.4213 3.7883 -1.4216 41 1 5.0222 2.1303 -1.9107 42 1 2.5550 5.6351 1.8590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249961149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:27 Heat of formation + Delta-G solvation = -8.805583 kcal Electronic energy + Delta-G solvation = -19043.107299 eV Core-core repulsion = 16443.337297 eV Total energy + Delta-G solvation = -2599.770002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58594 -37.80855 -35.18045 -34.20506 -33.43398 -29.96631 -29.82357 -27.10212 -26.33170 -24.80361 -23.93069 -22.04294 -20.88667 -20.20976 -18.49825 -17.12102 -16.61089 -16.35713 -16.14420 -15.92514 -15.27435 -15.11472 -14.63306 -14.14583 -14.05540 -13.66880 -13.30522 -13.10107 -13.03283 -12.89295 -12.84518 -12.49530 -12.43316 -12.41939 -12.21785 -11.89583 -11.76276 -11.67802 -11.32607 -11.26798 -11.03651 -10.88105 -10.65567 -8.90164 -8.63103 -8.17001 -6.25549 1.37938 1.38704 1.46577 2.37950 3.06438 3.25044 3.53377 4.05669 4.15570 4.21274 4.31912 4.39097 4.51156 4.56454 4.58675 4.65851 4.67876 4.83189 4.85722 4.90499 4.92091 4.96117 5.01441 5.06342 5.12960 5.14702 5.24238 5.28671 5.33664 5.34120 5.50783 5.51630 5.61369 5.65993 5.77156 6.04351 6.50051 6.63775 6.67334 7.01672 7.02822 7.41605 8.90941 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.010128 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.122527 B = 2764.018592 C = 3786.600055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.096 3.904 4 N -0.553 5.553 5 C 0.064 3.936 6 C -0.107 4.107 7 C 0.100 3.900 8 H 0.039 0.961 9 C -0.141 4.141 10 N -0.569 5.569 11 C 0.030 3.970 12 C 0.107 3.893 13 C 0.205 3.795 14 H 0.021 0.979 15 C -0.519 4.519 16 H 0.049 0.951 17 C 0.022 3.978 18 N -0.922 5.922 19 Si 0.949 3.051 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.269 1.269 23 H 0.042 0.958 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.057 0.943 28 H -0.012 1.012 29 H 0.060 0.940 30 H -0.002 1.002 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.023 0.977 39 H 0.089 0.911 40 H 0.039 0.961 41 H -0.003 1.003 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.252 -10.014 -2.007 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.032 4.032 4 N -0.278 5.278 5 C -0.063 4.063 6 C -0.145 4.145 7 C -0.008 4.008 8 H 0.057 0.943 9 C -0.198 4.198 10 N -0.294 5.294 11 C -0.117 4.117 12 C -0.024 4.024 13 C 0.097 3.903 14 H 0.039 0.961 15 C -0.559 4.559 16 H 0.068 0.932 17 C -0.178 4.178 18 N -0.561 5.561 19 Si 0.775 3.225 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.194 1.194 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.007 0.993 29 H 0.079 0.921 30 H 0.017 0.983 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.015 0.985 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.451 -9.853 -1.856 10.970 hybrid contribution -1.259 1.220 -0.084 1.755 sum 3.192 -8.633 -1.939 9.406 Atomic orbital electron populations 1.21683 0.94982 1.02132 1.01289 1.21611 0.96159 0.95988 1.01710 1.21657 0.87679 0.94990 0.98881 1.61214 1.07163 1.19130 1.40272 1.22357 0.95022 0.98187 0.90772 1.21444 0.93746 1.01509 0.97821 1.21213 0.96847 0.87023 0.95671 0.94317 1.22024 0.94347 1.01099 1.02377 1.59323 1.04469 1.22630 1.42931 1.22438 0.93560 1.00775 0.94943 1.20817 0.90206 0.96405 0.94952 1.19075 0.91389 0.84655 0.95132 0.96099 1.21203 1.21306 1.13398 0.99952 0.93230 1.25687 0.98533 0.98624 0.94963 1.70060 1.44079 1.32147 1.09864 0.85740 0.79869 0.78730 0.78210 1.19288 1.21111 1.19409 0.93858 0.93076 0.90689 0.91535 0.92385 0.99320 0.92110 0.98323 0.90458 0.94217 0.89038 0.92002 0.90449 0.91479 0.92735 0.95885 0.89212 0.94223 0.98507 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.91 71.98 0.71 -3.46 16 2 C -0.12 -3.97 5.62 30.59 0.17 -3.80 16 3 C 0.10 4.28 3.98 86.30 0.34 4.63 16 4 N -0.55 -25.15 4.00 -874.15 -3.50 -28.65 16 5 C 0.06 2.55 4.62 86.31 0.40 2.95 16 6 C -0.11 -3.84 4.92 30.11 0.15 -3.69 16 7 C 0.10 3.36 2.44 44.00 0.11 3.47 16 8 H 0.04 1.41 7.57 -2.39 -0.02 1.40 16 9 C -0.14 -3.42 7.77 71.98 0.56 -2.87 16 10 N -0.57 -22.35 4.28 -913.31 -3.91 -26.26 16 11 C 0.03 0.93 8.44 127.69 1.08 2.01 16 12 C 0.11 4.97 4.43 87.96 0.39 5.36 16 13 C 0.20 10.63 2.29 45.01 0.10 10.74 16 14 H 0.02 1.26 5.73 -2.38 -0.01 1.25 16 15 C -0.52 -28.80 5.68 25.60 0.15 -28.65 16 16 H 0.05 2.75 7.37 -2.91 -0.02 2.73 16 17 C 0.02 1.22 5.46 84.65 0.46 1.68 16 18 N -0.92 -55.12 12.61 21.45 0.27 -54.85 16 19 Si 0.95 44.16 29.54 68.60 2.03 46.18 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.06 1.87 6.62 -2.39 -0.02 1.85 16 28 H -0.01 -0.60 8.12 -2.39 -0.02 -0.62 16 29 H 0.06 2.93 6.23 -2.39 -0.01 2.92 16 30 H 0.00 -0.07 8.03 -2.39 -0.02 -0.09 16 31 H 0.08 2.63 6.94 -2.39 -0.02 2.62 16 32 H 0.04 1.69 7.23 -2.39 -0.02 1.67 16 33 H 0.09 2.59 7.72 -2.39 -0.02 2.58 16 34 H 0.06 1.49 8.03 -2.38 -0.02 1.47 16 35 H 0.08 1.54 8.11 -2.39 -0.02 1.53 16 36 H 0.07 1.46 6.48 -2.39 -0.02 1.45 16 37 H 0.05 1.71 7.97 -2.39 -0.02 1.69 16 38 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 2.30 6.06 -2.39 -0.01 2.28 16 40 H 0.04 1.96 7.74 -2.39 -0.02 1.94 16 41 H 0.00 -0.14 8.06 -2.38 -0.02 -0.16 16 42 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -62.91 310.39 0.46 -62.45 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.95 Total: 12.75 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 4.62 Total: -11.63 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -7.14 Total: -109.76 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -62.91 0.46 -62.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249961149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.644 kcal (2) G-P(sol) polarization free energy of solvation -62.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds