Wall clock time and date at job start Mon Mar 30 2020 03:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46930 * 2 1 4 4 N 1.46894 * 109.47124 * 179.97438 * 3 2 1 5 5 C 1.48070 * 110.99877 * 66.04900 * 4 3 2 6 6 C 1.50740 * 112.85537 * 84.29678 * 5 4 3 7 7 C 1.54512 * 108.94116 * 92.71078 * 6 5 4 8 8 H 1.08991 * 109.07104 * 44.49951 * 7 6 5 9 9 C 1.53006 * 109.07080 * 163.52064 * 7 6 5 10 10 N 1.40080 * 111.50965 * 283.97296 * 7 6 5 11 11 C 1.46903 * 110.99795 * 188.14260 * 10 7 6 12 12 C 1.47692 * 114.56367 * 61.45616 * 10 7 6 13 13 H 1.09003 * 109.73552 * 38.39246 * 12 10 7 14 14 C 1.50698 * 109.73328 * 159.03989 * 12 10 7 15 15 H 1.07996 * 120.00207 * 64.81865 * 14 12 10 16 16 C 1.37878 * 119.99630 * 244.81534 * 14 12 10 17 17 N 1.31520 * 119.99659 * 184.73223 * 16 14 12 18 18 Si 1.86801 * 120.00284 * 4.73294 * 16 14 12 19 19 H 1.48494 * 109.46783 * 84.53234 * 18 16 14 20 20 H 1.48503 * 109.46798 * 204.53179 * 18 16 14 21 21 H 1.48497 * 109.46923 * 324.53117 * 18 16 14 22 22 C 1.47687 * 111.05878 * 193.74331 * 4 3 2 23 23 H 1.08994 * 109.47261 * 300.00065 * 1 2 3 24 24 H 1.08997 * 109.46692 * 60.00292 * 1 2 3 25 25 H 1.09004 * 109.46458 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47261 * 239.99935 * 2 1 3 27 27 H 1.08999 * 109.47062 * 119.99334 * 2 1 3 28 28 H 1.09007 * 109.47156 * 59.99601 * 3 2 1 29 29 H 1.09006 * 109.46894 * 299.99917 * 3 2 1 30 30 H 1.08997 * 108.78632 * 323.45504 * 5 4 3 31 31 H 1.09003 * 108.78791 * 205.13167 * 5 4 3 32 32 H 1.08999 * 109.55733 * 212.55012 * 6 5 4 33 33 H 1.08999 * 109.55503 * 332.87010 * 6 5 4 34 34 H 1.09001 * 109.46687 * 59.99734 * 9 7 6 35 35 H 1.08998 * 109.47309 * 179.97438 * 9 7 6 36 36 H 1.08998 * 109.46995 * 300.00414 * 9 7 6 37 37 H 1.09008 * 109.46797 * 59.41414 * 11 10 7 38 38 H 1.08999 * 109.47383 * 179.41069 * 11 10 7 39 39 H 1.08994 * 109.47368 * 299.41642 * 11 10 7 40 40 H 0.97004 * 119.99921 * 179.97438 * 17 16 14 41 41 H 1.08991 * 109.03030 * 72.22303 * 22 4 3 42 42 H 1.09001 * 108.82980 * 313.46325 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0401 0.8812 -1.2624 6 6 4.1215 1.9023 -2.3684 7 6 5.5298 2.5378 -2.3616 8 1 6.2750 1.7512 -2.2433 9 6 5.7631 3.2506 -3.6953 10 7 5.6710 3.4626 -1.3190 11 6 6.9369 4.1987 -1.4360 12 6 5.5142 2.8913 0.0339 13 1 5.9723 1.9029 0.0715 14 6 6.1692 3.7946 1.0468 15 1 5.7834 4.7896 1.2124 16 6 7.2611 3.3507 1.7621 17 7 7.7754 4.1023 2.7109 18 14 8.0100 1.6817 1.3837 19 1 8.9682 1.8132 0.2569 20 1 8.7234 1.1757 2.5838 21 1 6.9336 0.7296 1.0096 22 6 4.0395 2.7814 0.3281 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8901 30 1 3.3921 0.0660 -1.5841 31 1 5.0381 0.4836 -1.0776 32 1 3.9452 1.4158 -3.3277 33 1 3.3711 2.6761 -2.2065 34 1 5.0104 4.0277 -3.8283 35 1 6.7552 3.7020 -3.6974 36 1 5.6894 2.5302 -4.5099 37 1 6.9632 4.7269 -2.3892 38 1 7.0163 4.9171 -0.6202 39 1 7.7705 3.4983 -1.3857 40 1 8.5434 3.7899 3.2145 41 1 3.8731 2.9804 1.3867 42 1 3.5038 3.5258 -0.2611 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249990030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:38 Heat of formation + Delta-G solvation = 14.651828 kcal Electronic energy + Delta-G solvation = -19009.097648 eV Core-core repulsion = 16410.344836 eV Total energy + Delta-G solvation = -2598.752813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.37753 -36.40113 -33.54688 -33.01717 -31.54622 -28.92113 -27.97451 -25.78012 -25.26966 -23.31169 -22.41638 -20.67577 -19.24152 -18.79236 -17.09402 -15.80826 -15.30967 -15.12380 -14.47473 -14.24424 -13.98867 -13.69919 -13.14625 -12.76909 -12.54540 -12.15829 -12.02959 -11.81690 -11.73744 -11.60284 -11.48108 -11.28140 -11.00660 -10.92911 -10.73101 -10.53404 -10.40947 -10.05363 -9.81517 -9.74680 -9.55900 -9.11091 -8.60650 -7.55323 -7.09560 -6.14924 -4.13871 3.25215 3.34023 3.38096 4.36889 4.43043 4.81263 5.06636 5.16924 5.22223 5.34193 5.42112 5.47403 5.63837 5.70377 5.86269 5.86766 5.89609 5.93434 6.06670 6.09325 6.16503 6.19646 6.30199 6.38076 6.41560 6.45650 6.48095 6.49930 6.59641 6.66935 6.77637 6.81255 7.20449 7.35503 7.52580 7.75082 7.81783 8.25347 8.30286 8.76752 8.92473 9.48445 10.97094 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.009451 C = 0.007531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.343825 B = 2961.897745 C = 3717.221950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.059 3.941 4 N -0.552 5.552 5 C 0.054 3.946 6 C -0.139 4.139 7 C 0.101 3.899 8 H 0.012 0.988 9 C -0.149 4.149 10 N -0.561 5.561 11 C 0.045 3.955 12 C 0.178 3.822 13 H 0.031 0.969 14 C -0.501 4.501 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.892 5.892 18 Si 0.867 3.133 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.258 1.258 22 C 0.080 3.920 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.092 0.908 39 H 0.005 0.995 40 H 0.265 0.735 41 H 0.077 0.923 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.666 -6.175 -9.011 13.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.069 4.069 4 N -0.276 5.276 5 C -0.074 4.074 6 C -0.179 4.179 7 C -0.010 4.010 8 H 0.029 0.971 9 C -0.206 4.206 10 N -0.287 5.287 11 C -0.102 4.102 12 C 0.074 3.926 13 H 0.048 0.952 14 C -0.540 4.540 15 H 0.098 0.902 16 C -0.124 4.124 17 N -0.529 5.529 18 Si 0.695 3.305 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.183 1.183 22 C -0.047 4.047 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.024 0.976 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.726 -6.158 -8.549 13.680 hybrid contribution 0.909 -0.927 -0.742 1.495 sum -7.817 -7.085 -9.290 14.057 Atomic orbital electron populations 1.21734 0.96177 1.01201 1.01591 1.21591 0.94753 0.97306 1.02350 1.22025 0.88612 0.96082 1.00180 1.62197 1.05895 1.27611 1.31930 1.21948 1.00554 0.96555 0.88306 1.22047 0.97973 0.99234 0.98607 1.20448 0.94906 0.93444 0.92214 0.97068 1.22085 1.01994 1.00309 0.96237 1.59428 1.35236 1.30083 1.03904 1.22195 0.88663 0.98397 1.00984 1.19621 0.92501 0.95287 0.85196 0.95159 1.20759 1.13088 1.01758 1.18398 0.90247 1.25029 0.96297 0.96653 0.94440 1.69886 1.23817 1.37616 1.21612 0.87015 0.79659 0.85914 0.77933 1.20422 1.21405 1.18287 1.22126 0.96597 0.85701 1.00311 0.92753 0.93106 0.92993 0.92271 0.91352 0.91254 0.95588 0.91933 0.91788 0.92086 0.91244 0.92369 0.92334 0.93579 0.93941 0.88928 0.97625 0.92484 0.90492 0.95093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.57 5.91 -26.73 -0.16 -1.73 16 3 C 0.06 0.91 4.86 -3.83 -0.02 0.89 16 4 N -0.55 -10.27 4.72 -235.74 -1.11 -11.38 16 5 C 0.05 0.93 5.01 -4.31 -0.02 0.91 16 6 C -0.14 -2.28 4.94 -27.07 -0.13 -2.41 16 7 C 0.10 1.85 2.07 -70.44 -0.15 1.71 16 8 H 0.01 0.23 7.59 -51.93 -0.39 -0.16 16 9 C -0.15 -2.29 8.58 37.16 0.32 -1.97 16 10 N -0.56 -11.92 4.03 -233.03 -0.94 -12.86 16 11 C 0.04 0.95 8.34 60.07 0.50 1.45 16 12 C 0.18 4.20 1.77 -69.55 -0.12 4.07 16 13 H 0.03 0.77 3.15 -51.93 -0.16 0.61 16 14 C -0.50 -13.54 6.13 -34.44 -0.21 -13.75 16 15 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 16 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 17 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 18 Si 0.87 21.64 27.39 -169.99 -4.66 16.98 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.26 -6.38 6.20 56.52 0.35 -6.03 16 22 C 0.08 1.70 4.60 -4.51 -0.02 1.68 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.75 6.22 -51.93 -0.32 0.42 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.06 8.03 -51.93 -0.42 0.64 16 29 H 0.03 0.39 7.59 -51.93 -0.39 0.00 16 30 H 0.06 0.93 5.81 -51.93 -0.30 0.63 16 31 H 0.06 1.23 6.52 -51.93 -0.34 0.89 16 32 H 0.06 0.85 8.04 -51.93 -0.42 0.43 16 33 H 0.07 1.20 6.65 -51.93 -0.35 0.86 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.90 5.97 -51.93 -0.31 0.59 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.78 5.90 -51.92 -0.31 0.47 16 38 H 0.09 2.20 6.27 -51.93 -0.33 1.88 16 39 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.08 1.75 7.71 -51.93 -0.40 1.35 16 42 H 0.03 0.66 7.07 -51.93 -0.37 0.29 16 LS Contribution 304.01 15.07 4.58 4.58 Total: -1.00 -28.32 304.01 -8.47 -36.79 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.37 Total: -0.22 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 0.26 Total: -8.22 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -1.28 Total: -49.90 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.66 Total: 16.98 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.32 -8.47 -36.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249990030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.437 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds