Wall clock time and date at job start Mon Mar 30 2020 03:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46930 * 2 1 4 4 N 1.46894 * 109.47124 * 179.97438 * 3 2 1 5 5 C 1.48070 * 110.99877 * 66.04900 * 4 3 2 6 6 C 1.50740 * 112.85537 * 84.29678 * 5 4 3 7 7 C 1.54512 * 108.94116 * 92.71078 * 6 5 4 8 8 H 1.08991 * 109.07104 * 44.49951 * 7 6 5 9 9 C 1.53006 * 109.07080 * 163.52064 * 7 6 5 10 10 N 1.40080 * 111.50965 * 283.97296 * 7 6 5 11 11 C 1.46903 * 110.99795 * 188.14260 * 10 7 6 12 12 C 1.47692 * 114.56367 * 61.45616 * 10 7 6 13 13 H 1.09003 * 109.73552 * 38.39246 * 12 10 7 14 14 C 1.50698 * 109.73328 * 159.03989 * 12 10 7 15 15 H 1.07996 * 120.00207 * 64.81865 * 14 12 10 16 16 C 1.37878 * 119.99630 * 244.81534 * 14 12 10 17 17 N 1.31520 * 119.99659 * 184.73223 * 16 14 12 18 18 Si 1.86801 * 120.00284 * 4.73294 * 16 14 12 19 19 H 1.48494 * 109.46783 * 84.53234 * 18 16 14 20 20 H 1.48503 * 109.46798 * 204.53179 * 18 16 14 21 21 H 1.48497 * 109.46923 * 324.53117 * 18 16 14 22 22 C 1.47687 * 111.05878 * 193.74331 * 4 3 2 23 23 H 1.08994 * 109.47261 * 300.00065 * 1 2 3 24 24 H 1.08997 * 109.46692 * 60.00292 * 1 2 3 25 25 H 1.09004 * 109.46458 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47261 * 239.99935 * 2 1 3 27 27 H 1.08999 * 109.47062 * 119.99334 * 2 1 3 28 28 H 1.09007 * 109.47156 * 59.99601 * 3 2 1 29 29 H 1.09006 * 109.46894 * 299.99917 * 3 2 1 30 30 H 1.08997 * 108.78632 * 323.45504 * 5 4 3 31 31 H 1.09003 * 108.78791 * 205.13167 * 5 4 3 32 32 H 1.08999 * 109.55733 * 212.55012 * 6 5 4 33 33 H 1.08999 * 109.55503 * 332.87010 * 6 5 4 34 34 H 1.09001 * 109.46687 * 59.99734 * 9 7 6 35 35 H 1.08998 * 109.47309 * 179.97438 * 9 7 6 36 36 H 1.08998 * 109.46995 * 300.00414 * 9 7 6 37 37 H 1.09008 * 109.46797 * 59.41414 * 11 10 7 38 38 H 1.08999 * 109.47383 * 179.41069 * 11 10 7 39 39 H 1.08994 * 109.47368 * 299.41642 * 11 10 7 40 40 H 0.97004 * 119.99921 * 179.97438 * 17 16 14 41 41 H 1.08991 * 109.03030 * 72.22303 * 22 4 3 42 42 H 1.09001 * 108.82980 * 313.46325 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0401 0.8812 -1.2624 6 6 4.1215 1.9023 -2.3684 7 6 5.5298 2.5378 -2.3616 8 1 6.2750 1.7512 -2.2433 9 6 5.7631 3.2506 -3.6953 10 7 5.6710 3.4626 -1.3190 11 6 6.9369 4.1987 -1.4360 12 6 5.5142 2.8913 0.0339 13 1 5.9723 1.9029 0.0715 14 6 6.1692 3.7946 1.0468 15 1 5.7834 4.7896 1.2124 16 6 7.2611 3.3507 1.7621 17 7 7.7754 4.1023 2.7109 18 14 8.0100 1.6817 1.3837 19 1 8.9682 1.8132 0.2569 20 1 8.7234 1.1757 2.5838 21 1 6.9336 0.7296 1.0096 22 6 4.0395 2.7814 0.3281 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8901 30 1 3.3921 0.0660 -1.5841 31 1 5.0381 0.4836 -1.0776 32 1 3.9452 1.4158 -3.3277 33 1 3.3711 2.6761 -2.2065 34 1 5.0104 4.0277 -3.8283 35 1 6.7552 3.7020 -3.6974 36 1 5.6894 2.5302 -4.5099 37 1 6.9632 4.7269 -2.3892 38 1 7.0163 4.9171 -0.6202 39 1 7.7705 3.4983 -1.3857 40 1 8.5434 3.7899 3.2145 41 1 3.8731 2.9804 1.3867 42 1 3.5038 3.5258 -0.2611 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249990030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:38 Heat of formation + Delta-G solvation = -4.718308 kcal Electronic energy + Delta-G solvation = -19009.937601 eV Core-core repulsion = 16410.344836 eV Total energy + Delta-G solvation = -2599.592765 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.94510 -37.81303 -35.41539 -34.18603 -33.43593 -30.36868 -29.46283 -27.64639 -26.58090 -24.83856 -23.90089 -21.98697 -20.75108 -20.41702 -19.17056 -17.24077 -16.94876 -16.62463 -15.97067 -15.89301 -15.55764 -14.99740 -14.75386 -14.34148 -14.18708 -13.56493 -13.52909 -13.24650 -13.12722 -12.95648 -12.87360 -12.74814 -12.59294 -12.38533 -12.09885 -12.00098 -11.89835 -11.73806 -11.47077 -11.35397 -11.10557 -10.99150 -10.76648 -9.01426 -8.84481 -8.34533 -6.35389 1.23314 1.27886 1.36392 2.26334 2.90737 3.02542 3.45361 3.81787 4.01122 4.06540 4.22005 4.29835 4.40070 4.52026 4.55123 4.61048 4.63751 4.65009 4.73857 4.81377 4.82436 4.88758 4.91312 4.96993 5.00565 5.06744 5.13709 5.20994 5.24485 5.35595 5.35917 5.39694 5.49181 5.53635 5.61281 6.16687 6.27260 6.35901 6.45551 6.69744 7.02001 7.29186 8.81449 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.009451 C = 0.007531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.343825 B = 2961.897745 C = 3717.221950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.060 3.940 4 N -0.566 5.566 5 C 0.053 3.947 6 C -0.129 4.129 7 C 0.089 3.911 8 H -0.002 1.002 9 C -0.140 4.140 10 N -0.561 5.561 11 C 0.052 3.948 12 C 0.184 3.816 13 H 0.019 0.981 14 C -0.494 4.494 15 H 0.041 0.959 16 C 0.031 3.969 17 N -0.936 5.936 18 Si 0.923 3.077 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.253 1.253 22 C 0.093 3.907 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.058 0.942 39 H -0.007 1.007 40 H 0.267 0.733 41 H 0.052 0.948 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.010 -8.037 -11.516 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.068 4.068 4 N -0.291 5.291 5 C -0.074 4.074 6 C -0.169 4.169 7 C -0.022 4.022 8 H 0.016 0.984 9 C -0.198 4.198 10 N -0.287 5.287 11 C -0.096 4.096 12 C 0.079 3.921 13 H 0.036 0.964 14 C -0.533 4.533 15 H 0.059 0.941 16 C -0.168 4.168 17 N -0.576 5.576 18 Si 0.749 3.251 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.178 1.178 22 C -0.035 4.035 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.011 0.989 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.089 -8.029 -11.077 16.998 hybrid contribution 1.269 -0.297 0.011 1.304 sum -8.819 -8.326 -11.066 16.418 Atomic orbital electron populations 1.21694 0.94153 1.02345 1.02006 1.21540 0.96418 0.95198 1.02184 1.22113 0.86352 0.98025 1.00283 1.62087 1.08065 1.25439 1.33491 1.22000 0.99972 0.97561 0.87865 1.21999 0.96130 0.98738 0.99991 1.20698 0.96022 0.92903 0.92563 0.98414 1.22003 1.01894 1.00849 0.95035 1.59383 1.34926 1.30808 1.03539 1.22111 0.88442 0.97582 1.01426 1.19439 0.93416 0.93559 0.85723 0.96372 1.20862 1.12797 1.00592 1.19043 0.94120 1.25666 0.96888 0.99844 0.94403 1.70003 1.24830 1.39575 1.23176 0.86122 0.78984 0.82117 0.77893 1.19796 1.20986 1.17804 1.21738 0.95268 0.87686 0.98808 0.92782 0.92307 0.91498 0.91518 0.92393 0.91907 0.94723 0.88954 0.94049 0.88550 0.91936 0.91957 0.92630 0.90661 0.90548 0.92334 0.98861 0.92391 0.93001 0.95242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.91 71.98 0.71 -1.86 16 2 C -0.12 -2.66 5.91 30.60 0.18 -2.48 16 3 C 0.06 1.72 4.86 86.31 0.42 2.14 16 4 N -0.57 -20.39 4.72 -899.75 -4.25 -24.64 16 5 C 0.05 1.70 5.01 85.34 0.43 2.12 16 6 C -0.13 -3.80 4.94 30.37 0.15 -3.65 16 7 C 0.09 3.05 2.07 46.66 0.10 3.14 16 8 H 0.00 -0.07 7.59 -2.39 -0.02 -0.09 16 9 C -0.14 -3.82 8.58 71.98 0.62 -3.20 16 10 N -0.56 -23.54 4.03 -891.18 -3.60 -27.14 16 11 C 0.05 2.21 8.34 127.69 1.07 3.27 16 12 C 0.18 8.76 1.77 43.29 0.08 8.84 16 13 H 0.02 0.93 3.15 -2.39 -0.01 0.93 16 14 C -0.49 -27.78 6.13 25.60 0.16 -27.63 16 15 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 16 C 0.03 1.81 5.47 84.65 0.46 2.27 16 17 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 18 Si 0.92 45.46 27.39 68.60 1.88 47.34 16 19 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 21 H -0.25 -12.21 6.20 99.48 0.62 -11.59 16 22 C 0.09 4.00 4.60 85.43 0.39 4.39 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.07 1.43 6.22 -2.39 -0.01 1.42 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.86 8.03 -2.38 -0.02 1.84 16 29 H 0.03 0.94 7.59 -2.38 -0.02 0.92 16 30 H 0.09 2.38 5.81 -2.39 -0.01 2.37 16 31 H 0.04 1.51 6.52 -2.39 -0.02 1.49 16 32 H 0.10 2.19 8.04 -2.39 -0.02 2.17 16 33 H 0.06 1.96 6.65 -2.39 -0.02 1.95 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.53 5.97 -2.39 -0.01 1.52 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 37 H 0.08 2.70 5.90 -2.38 -0.01 2.69 16 38 H 0.06 2.87 6.27 -2.39 -0.01 2.86 16 39 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.05 2.45 7.71 -2.39 -0.02 2.43 16 42 H 0.03 1.25 7.07 -2.39 -0.02 1.24 16 Total: -1.00 -63.07 304.01 -0.03 -63.10 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.88 Total: 11.25 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 4.76 Total: -12.65 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -7.54 Total: -109.04 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -63.07 -0.03 -63.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249990030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.378 kcal (2) G-P(sol) polarization free energy of solvation -63.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds