Wall clock time and date at job start Mon Mar 30 2020 03:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47294 * 2 1 4 4 N 1.46900 * 109.47128 * 180.02562 * 3 2 1 5 5 C 1.40089 * 110.99996 * 61.35589 * 4 3 2 6 6 C 1.54517 * 111.50896 * 188.15162 * 5 4 3 7 7 C 1.50741 * 108.94644 * 283.99742 * 6 5 4 8 8 H 1.09003 * 108.79376 * 331.75817 * 7 6 5 9 9 C 1.53001 * 108.79384 * 213.53328 * 7 6 5 10 10 N 1.48074 * 112.93675 * 92.64524 * 7 6 5 11 11 C 1.46901 * 111.00248 * 192.21602 * 10 7 6 12 12 C 1.47748 * 113.79085 * 318.28353 * 10 7 6 13 13 H 1.08992 * 108.99300 * 79.49840 * 12 10 7 14 14 C 1.50700 * 108.99273 * 198.33277 * 12 10 7 15 15 H 1.07998 * 119.99987 * 5.41493 * 14 12 10 16 16 C 1.37879 * 120.00180 * 185.41794 * 14 12 10 17 17 N 1.31517 * 119.99704 * 359.97438 * 16 14 12 18 18 Si 1.86789 * 120.00105 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47527 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47223 * 120.00456 * 18 16 14 21 21 H 1.48508 * 109.47197 * 239.99798 * 18 16 14 22 22 C 1.47685 * 111.00026 * 190.00159 * 4 3 2 23 23 H 1.09001 * 109.47298 * 59.99423 * 1 2 3 24 24 H 1.08995 * 109.47321 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46816 * 299.99877 * 1 2 3 26 26 H 1.09005 * 109.46816 * 240.00123 * 2 1 3 27 27 H 1.08996 * 109.47634 * 120.00252 * 2 1 3 28 28 H 1.08998 * 109.47076 * 59.99907 * 3 2 1 29 29 H 1.08998 * 109.47374 * 299.99982 * 3 2 1 30 30 H 1.09003 * 109.06677 * 67.63199 * 5 4 3 31 31 H 1.08994 * 109.07359 * 308.67705 * 5 4 3 32 32 H 1.08996 * 109.55734 * 164.15826 * 6 5 4 33 33 H 1.08998 * 109.55605 * 43.83764 * 6 5 4 34 34 H 1.09004 * 109.46370 * 60.00062 * 9 7 6 35 35 H 1.08993 * 109.47133 * 179.97438 * 9 7 6 36 36 H 1.08992 * 109.46967 * 300.00674 * 9 7 6 37 37 H 1.09005 * 109.47139 * 75.22633 * 11 10 7 38 38 H 1.08997 * 109.47343 * 195.23169 * 11 10 7 39 39 H 1.08999 * 109.46930 * 315.23338 * 11 10 7 40 40 H 0.96994 * 120.00392 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.74021 * 32.32893 * 22 4 3 42 42 H 1.09006 * 109.77988 * 271.64902 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0105 0.8157 -1.1487 6 6 5.5421 0.6276 -1.0683 7 6 6.2122 1.9530 -1.3266 8 1 5.5672 2.5535 -1.9682 9 6 7.5334 1.7034 -2.0566 10 7 6.4892 2.7113 -0.0853 11 6 6.8686 4.0976 -0.3887 12 6 5.3877 2.6670 0.8985 13 1 5.4285 1.7188 1.4343 14 6 5.5638 3.7943 1.8830 15 1 6.3502 4.5202 1.7377 16 6 4.7211 3.8990 2.9692 17 7 3.7632 3.0153 3.1458 18 14 4.9399 5.2959 4.1899 19 1 6.0803 6.1482 3.7677 20 1 3.7011 6.1135 4.2337 21 1 5.2118 4.7367 5.5385 22 6 4.0384 2.8002 0.2388 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.7718 1.4252 -2.0203 31 1 3.5371 -0.1600 -1.2574 32 1 5.8610 -0.0950 -1.8194 33 1 5.8140 0.2686 -0.0757 34 1 7.3361 1.1986 -3.0024 35 1 8.0274 2.6556 -2.2496 36 1 8.1775 1.0780 -1.4385 37 1 5.9812 4.6633 -0.6728 38 1 7.3222 4.5514 0.4924 39 1 7.5839 4.1068 -1.2111 40 1 3.1706 3.0887 3.9101 41 1 3.3613 3.3493 0.8931 42 1 4.1427 3.3280 -0.7092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249990034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:41 Heat of formation + Delta-G solvation = 17.614801 kcal Electronic energy + Delta-G solvation = -19023.342945 eV Core-core repulsion = 16424.718616 eV Total energy + Delta-G solvation = -2598.624328 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.13527 -36.11476 -33.66149 -32.76262 -31.37855 -28.35789 -27.81786 -25.47634 -25.02201 -23.16132 -22.20445 -20.80966 -19.69106 -18.27565 -16.28996 -15.57170 -15.00135 -14.95322 -14.38926 -14.23913 -13.89696 -13.42756 -12.91438 -12.49625 -12.36895 -12.28069 -11.89037 -11.73317 -11.48042 -11.28148 -11.09224 -11.04221 -10.81393 -10.62379 -10.60352 -10.51299 -10.35146 -10.00800 -9.84465 -9.71552 -9.45518 -8.68619 -8.34314 -7.38965 -6.84695 -5.94322 -4.00816 3.31187 3.39890 3.43188 4.44058 4.74850 5.00564 5.32490 5.36047 5.40760 5.48213 5.50076 5.72067 5.76634 5.93012 5.99590 6.03153 6.08982 6.15029 6.19284 6.28238 6.33310 6.36349 6.45097 6.47657 6.51333 6.60036 6.64418 6.72814 6.78560 6.88090 6.94072 7.10016 7.35537 7.69580 7.87719 8.05946 8.19907 8.40492 8.51387 8.76109 9.08985 9.63659 11.10255 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.011201 C = 0.006904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.134843 B = 2499.279106 C = 4054.370078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.069 3.931 4 N -0.542 5.542 5 C 0.074 3.926 6 C -0.113 4.113 7 C 0.085 3.915 8 H 0.021 0.979 9 C -0.140 4.140 10 N -0.545 5.545 11 C 0.042 3.958 12 C 0.220 3.780 13 H 0.059 0.941 14 C -0.522 4.522 15 H 0.068 0.932 16 C 0.062 3.938 17 N -0.875 5.875 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.285 1.285 22 C 0.067 3.933 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.011 0.989 30 H -0.001 1.001 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.014 0.986 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.257 0.743 41 H 0.095 0.905 42 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 -3.889 -8.235 9.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.059 4.059 4 N -0.266 5.266 5 C -0.056 4.056 6 C -0.151 4.151 7 C -0.024 4.024 8 H 0.039 0.961 9 C -0.198 4.198 10 N -0.270 5.270 11 C -0.106 4.106 12 C 0.113 3.887 13 H 0.077 0.923 14 C -0.561 4.561 15 H 0.086 0.914 16 C -0.141 4.141 17 N -0.513 5.513 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.211 1.211 22 C -0.061 4.061 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.029 0.971 30 H 0.017 0.983 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.033 0.967 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -1.132 -4.421 -7.542 8.815 hybrid contribution -1.005 1.657 -0.369 1.973 sum -2.137 -2.764 -7.911 8.648 Atomic orbital electron populations 1.21723 0.96433 1.00941 1.01499 1.21605 0.94672 0.97675 1.02090 1.21995 0.88195 0.95736 0.99937 1.58972 1.05815 1.23666 1.38130 1.21070 0.95537 0.98210 0.90750 1.21572 0.94104 0.96424 1.03013 1.21259 0.94765 0.94582 0.91784 0.96092 1.21916 0.98078 1.01131 0.98647 1.62217 1.42216 1.11862 1.10718 1.22213 0.98142 0.90489 0.99757 1.19147 0.82575 0.98976 0.87952 0.92302 1.21540 1.15372 1.11316 1.07829 0.91409 1.24961 0.95474 0.96077 0.97565 1.70056 1.17905 1.34372 1.28936 0.86597 0.77792 0.82432 0.81491 1.19894 1.21345 1.21092 1.22563 1.01500 0.85407 0.96596 0.93409 0.93172 0.92641 0.92684 0.91078 0.90304 0.97063 0.98279 0.91906 0.91999 0.89751 0.93612 0.93205 0.92275 0.96731 0.90821 0.94523 0.93269 0.88718 0.98458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.91 5.71 -26.73 -0.15 -2.07 16 3 C 0.07 1.30 4.94 -3.82 -0.02 1.28 16 4 N -0.54 -11.37 4.03 -239.69 -0.97 -12.34 16 5 C 0.07 1.36 4.82 -6.55 -0.03 1.33 16 6 C -0.11 -2.03 5.19 -27.07 -0.14 -2.17 16 7 C 0.08 1.59 1.81 -68.20 -0.12 1.47 16 8 H 0.02 0.42 6.41 -51.93 -0.33 0.09 16 9 C -0.14 -2.19 9.01 37.16 0.33 -1.85 16 10 N -0.54 -11.96 4.63 -229.36 -1.06 -13.02 16 11 C 0.04 0.87 8.39 60.07 0.50 1.37 16 12 C 0.22 5.48 1.75 -69.51 -0.12 5.36 16 13 H 0.06 1.68 7.20 -51.93 -0.37 1.31 16 14 C -0.52 -13.99 7.86 -34.44 -0.27 -14.26 16 15 H 0.07 1.80 5.16 -52.49 -0.27 1.53 16 16 C 0.06 1.67 5.02 -17.82 -0.09 1.58 16 17 N -0.87 -24.26 11.87 55.43 0.66 -23.61 16 18 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.07 1.58 4.38 -4.51 -0.02 1.56 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.81 6.25 -51.93 -0.32 0.48 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.63 7.81 -51.93 -0.41 1.23 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.00 -0.01 7.60 -51.93 -0.39 -0.41 16 31 H 0.06 1.04 5.74 -51.93 -0.30 0.74 16 32 H 0.06 0.93 7.68 -51.93 -0.40 0.53 16 33 H 0.08 1.71 7.19 -51.93 -0.37 1.34 16 34 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.05 0.76 6.38 -51.93 -0.33 0.43 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.01 0.30 7.59 -51.93 -0.39 -0.09 16 38 H 0.07 1.57 6.01 -51.93 -0.31 1.26 16 39 H 0.04 0.65 6.20 -51.93 -0.32 0.33 16 40 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.09 2.51 5.69 -51.93 -0.30 2.21 16 42 H 0.00 -0.06 6.28 -51.93 -0.33 -0.39 16 LS Contribution 304.59 15.07 4.59 4.59 Total: -1.00 -27.30 304.59 -8.80 -36.11 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.24 Total: 0.20 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 0.24 Total: -7.95 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -1.37 Total: -48.96 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.30 -8.80 -36.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249990034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.721 kcal (2) G-P(sol) polarization free energy of solvation -27.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds