Wall clock time and date at job start Mon Mar 30 2020 03:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47294 * 2 1 4 4 N 1.46900 * 109.47128 * 180.02562 * 3 2 1 5 5 C 1.40089 * 110.99996 * 61.35589 * 4 3 2 6 6 C 1.54517 * 111.50896 * 188.15162 * 5 4 3 7 7 C 1.50741 * 108.94644 * 283.99742 * 6 5 4 8 8 H 1.09003 * 108.79376 * 331.75817 * 7 6 5 9 9 C 1.53001 * 108.79384 * 213.53328 * 7 6 5 10 10 N 1.48074 * 112.93675 * 92.64524 * 7 6 5 11 11 C 1.46901 * 111.00248 * 192.21602 * 10 7 6 12 12 C 1.47748 * 113.79085 * 318.28353 * 10 7 6 13 13 H 1.08992 * 108.99300 * 79.49840 * 12 10 7 14 14 C 1.50700 * 108.99273 * 198.33277 * 12 10 7 15 15 H 1.07998 * 119.99987 * 5.41493 * 14 12 10 16 16 C 1.37879 * 120.00180 * 185.41794 * 14 12 10 17 17 N 1.31517 * 119.99704 * 359.97438 * 16 14 12 18 18 Si 1.86789 * 120.00105 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47527 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47223 * 120.00456 * 18 16 14 21 21 H 1.48508 * 109.47197 * 239.99798 * 18 16 14 22 22 C 1.47685 * 111.00026 * 190.00159 * 4 3 2 23 23 H 1.09001 * 109.47298 * 59.99423 * 1 2 3 24 24 H 1.08995 * 109.47321 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46816 * 299.99877 * 1 2 3 26 26 H 1.09005 * 109.46816 * 240.00123 * 2 1 3 27 27 H 1.08996 * 109.47634 * 120.00252 * 2 1 3 28 28 H 1.08998 * 109.47076 * 59.99907 * 3 2 1 29 29 H 1.08998 * 109.47374 * 299.99982 * 3 2 1 30 30 H 1.09003 * 109.06677 * 67.63199 * 5 4 3 31 31 H 1.08994 * 109.07359 * 308.67705 * 5 4 3 32 32 H 1.08996 * 109.55734 * 164.15826 * 6 5 4 33 33 H 1.08998 * 109.55605 * 43.83764 * 6 5 4 34 34 H 1.09004 * 109.46370 * 60.00062 * 9 7 6 35 35 H 1.08993 * 109.47133 * 179.97438 * 9 7 6 36 36 H 1.08992 * 109.46967 * 300.00674 * 9 7 6 37 37 H 1.09005 * 109.47139 * 75.22633 * 11 10 7 38 38 H 1.08997 * 109.47343 * 195.23169 * 11 10 7 39 39 H 1.08999 * 109.46930 * 315.23338 * 11 10 7 40 40 H 0.96994 * 120.00392 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.74021 * 32.32893 * 22 4 3 42 42 H 1.09006 * 109.77988 * 271.64902 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0105 0.8157 -1.1487 6 6 5.5421 0.6276 -1.0683 7 6 6.2122 1.9530 -1.3266 8 1 5.5672 2.5535 -1.9682 9 6 7.5334 1.7034 -2.0566 10 7 6.4892 2.7113 -0.0853 11 6 6.8686 4.0976 -0.3887 12 6 5.3877 2.6670 0.8985 13 1 5.4285 1.7188 1.4343 14 6 5.5638 3.7943 1.8830 15 1 6.3502 4.5202 1.7377 16 6 4.7211 3.8990 2.9692 17 7 3.7632 3.0153 3.1458 18 14 4.9399 5.2959 4.1899 19 1 6.0803 6.1482 3.7677 20 1 3.7011 6.1135 4.2337 21 1 5.2118 4.7367 5.5385 22 6 4.0384 2.8002 0.2388 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.7718 1.4252 -2.0203 31 1 3.5371 -0.1600 -1.2574 32 1 5.8610 -0.0950 -1.8194 33 1 5.8140 0.2686 -0.0757 34 1 7.3361 1.1986 -3.0024 35 1 8.0274 2.6556 -2.2496 36 1 8.1775 1.0780 -1.4385 37 1 5.9812 4.6633 -0.6728 38 1 7.3222 4.5514 0.4924 39 1 7.5839 4.1068 -1.2111 40 1 3.1706 3.0887 3.9101 41 1 3.3613 3.3493 0.8931 42 1 4.1427 3.3280 -0.7092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249990034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:41 Heat of formation + Delta-G solvation = -0.108471 kcal Electronic energy + Delta-G solvation = -19024.111483 eV Core-core repulsion = 16424.718616 eV Total energy + Delta-G solvation = -2599.392867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.78684 -37.69086 -35.49331 -34.13471 -33.19757 -29.89854 -29.44593 -27.37833 -26.48529 -24.79159 -23.81209 -22.34104 -21.22862 -20.00253 -18.24576 -17.31667 -16.66383 -16.40092 -16.18930 -15.90910 -15.40148 -14.98174 -14.41474 -14.03674 -13.97231 -13.76452 -13.46104 -13.16554 -12.99489 -12.90894 -12.75438 -12.58426 -12.43852 -12.37510 -12.18263 -12.04359 -11.79711 -11.75635 -11.50245 -11.23674 -11.10365 -10.64385 -10.41558 -9.06006 -8.58167 -8.02458 -6.15253 1.40836 1.43834 1.53827 2.45158 3.12794 3.32359 3.36435 3.96742 3.99241 4.08848 4.19556 4.32006 4.48065 4.50122 4.55745 4.62229 4.67962 4.69241 4.78910 4.83050 4.91293 4.95261 5.00147 5.04300 5.06089 5.18027 5.20979 5.23908 5.34770 5.39124 5.41738 5.43998 5.52553 5.79240 5.80574 6.19702 6.41158 6.58492 6.75425 6.96475 7.04352 7.53138 9.01342 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.011201 C = 0.006904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.134843 B = 2499.279106 C = 4054.370078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C 0.071 3.929 4 N -0.557 5.557 5 C 0.072 3.928 6 C -0.109 4.109 7 C 0.080 3.920 8 H 0.012 0.988 9 C -0.131 4.131 10 N -0.557 5.557 11 C 0.049 3.951 12 C 0.232 3.768 13 H 0.016 0.984 14 C -0.540 4.540 15 H 0.067 0.933 16 C 0.017 3.983 17 N -0.898 5.898 18 Si 0.950 3.050 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.086 3.914 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.019 0.981 30 H 0.002 0.998 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.000 1.000 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.257 0.743 41 H 0.060 0.940 42 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.274 -4.521 -9.859 10.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.057 4.057 4 N -0.281 5.281 5 C -0.058 4.058 6 C -0.147 4.147 7 C -0.028 4.028 8 H 0.030 0.970 9 C -0.189 4.189 10 N -0.283 5.283 11 C -0.099 4.099 12 C 0.125 3.875 13 H 0.034 0.966 14 C -0.579 4.579 15 H 0.085 0.915 16 C -0.183 4.183 17 N -0.537 5.537 18 Si 0.776 3.224 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.042 4.042 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.020 0.980 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.019 0.981 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges -0.873 -5.059 -9.182 10.520 hybrid contribution -1.068 1.825 0.105 2.117 sum -1.941 -3.234 -9.077 9.830 Atomic orbital electron populations 1.21683 0.94227 1.02461 1.01671 1.21529 0.96528 0.95015 1.02034 1.21997 0.86985 0.97904 0.98770 1.58933 1.07197 1.21993 1.39970 1.21186 0.96079 0.98957 0.89533 1.21602 0.93776 0.96760 1.02579 1.21437 0.96794 0.94301 0.90262 0.96977 1.21852 0.95872 1.01718 0.99430 1.62134 1.41022 1.12969 1.12137 1.22144 0.98108 0.89434 1.00212 1.18784 0.84186 0.96039 0.88523 0.96621 1.21872 1.15370 1.11911 1.08705 0.91538 1.25655 0.95247 0.98202 0.99185 1.70185 1.18426 1.35760 1.29290 0.85637 0.77807 0.79780 0.79139 1.19309 1.20995 1.21025 1.22128 1.00173 0.86730 0.95193 0.92331 0.90949 0.93433 0.91024 0.92685 0.93311 0.96328 0.97989 0.89527 0.88204 0.92570 0.90601 0.92815 0.92395 0.98127 0.92228 0.91280 0.93423 0.92106 0.99087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.91 71.98 0.71 -2.74 16 2 C -0.11 -3.41 5.71 30.59 0.17 -3.23 16 3 C 0.07 2.69 4.94 86.30 0.43 3.11 16 4 N -0.56 -23.72 4.03 -912.25 -3.67 -27.40 16 5 C 0.07 2.53 4.82 88.05 0.42 2.95 16 6 C -0.11 -3.74 5.19 30.38 0.16 -3.59 16 7 C 0.08 2.89 1.81 43.96 0.08 2.97 16 8 H 0.01 0.47 6.41 -2.39 -0.02 0.45 16 9 C -0.13 -3.69 9.01 71.98 0.65 -3.04 16 10 N -0.56 -24.54 4.63 -879.56 -4.07 -28.61 16 11 C 0.05 2.00 8.39 127.69 1.07 3.07 16 12 C 0.23 11.96 1.75 43.28 0.08 12.04 16 13 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 14 C -0.54 -29.81 7.86 25.60 0.20 -29.61 16 15 H 0.07 3.62 5.16 -2.91 -0.02 3.60 16 16 C 0.02 0.97 5.02 84.65 0.43 1.39 16 17 N -0.90 -51.63 11.87 21.45 0.25 -51.37 16 18 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 C 0.09 4.23 4.38 85.43 0.37 4.60 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.07 1.91 6.25 -2.38 -0.01 1.90 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 2.11 7.81 -2.39 -0.02 2.09 16 29 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.00 0.08 7.60 -2.39 -0.02 0.06 16 31 H 0.09 2.64 5.74 -2.39 -0.01 2.63 16 32 H 0.10 2.65 7.68 -2.39 -0.02 2.63 16 33 H 0.06 2.27 7.19 -2.39 -0.02 2.25 16 34 H 0.08 1.70 8.08 -2.38 -0.02 1.68 16 35 H 0.05 1.46 6.38 -2.39 -0.02 1.45 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.00 0.01 7.59 -2.38 -0.02 -0.01 16 38 H 0.06 2.56 6.01 -2.39 -0.01 2.54 16 39 H 0.07 2.33 6.20 -2.39 -0.01 2.31 16 40 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 41 H 0.06 3.38 5.69 -2.39 -0.01 3.36 16 42 H -0.01 -0.44 6.28 -2.38 -0.01 -0.45 16 Total: -1.00 -60.86 304.59 0.29 -60.57 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.97 Total: 12.82 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 4.77 Total: -12.07 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -7.49 Total: -107.38 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -60.86 0.29 -60.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249990034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.461 kcal (2) G-P(sol) polarization free energy of solvation -60.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds