Wall clock time and date at job start Mon Mar 30 2020 03:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47505 * 2 1 4 4 N 1.46894 * 109.47245 * 185.28301 * 3 2 1 5 5 C 1.40016 * 111.00084 * 300.90226 * 4 3 2 6 6 H 1.09000 * 108.96408 * 67.51656 * 5 4 3 7 7 C 1.50697 * 108.96187 * 308.76541 * 5 4 3 8 8 H 1.08004 * 119.99845 * 353.83202 * 7 5 4 9 9 C 1.37881 * 120.00325 * 173.83783 * 7 5 4 10 10 N 1.31513 * 119.99640 * 359.97438 * 9 7 5 11 11 Si 1.86795 * 120.00230 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47427 * 270.00057 * 11 9 7 13 13 H 1.48504 * 109.46857 * 30.00125 * 11 9 7 14 14 H 1.48498 * 109.47157 * 149.99574 * 11 9 7 15 15 C 1.54206 * 112.00619 * 188.13756 * 5 4 3 16 16 N 1.44642 * 108.83323 * 281.08165 * 15 5 4 17 17 C 1.46899 * 111.04012 * 220.42920 * 16 15 5 18 18 C 1.48060 * 113.78492 * 94.32483 * 16 15 5 19 19 C 1.53700 * 112.46760 * 318.31836 * 18 16 15 20 20 C 1.47900 * 110.99887 * 68.87576 * 4 3 2 21 21 H 1.09004 * 109.63863 * 273.46268 * 20 4 3 22 22 C 1.53003 * 109.63376 * 33.86388 * 20 4 3 23 23 H 1.08992 * 109.47223 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46683 * 299.99757 * 1 2 3 25 25 H 1.09002 * 109.47136 * 59.99416 * 1 2 3 26 26 H 1.09002 * 109.46683 * 240.00243 * 2 1 3 27 27 H 1.09002 * 109.47136 * 120.00584 * 2 1 3 28 28 H 1.09007 * 109.46823 * 65.28315 * 3 2 1 29 29 H 1.08994 * 109.47302 * 305.29024 * 3 2 1 30 30 H 0.97002 * 119.99842 * 179.97438 * 10 9 7 31 31 H 1.09007 * 109.56920 * 40.97753 * 15 5 4 32 32 H 1.08999 * 109.57426 * 161.33888 * 15 5 4 33 33 H 1.08999 * 109.46947 * 296.31875 * 17 16 15 34 34 H 1.08998 * 109.47488 * 56.32527 * 17 16 15 35 35 H 1.09010 * 109.46485 * 176.32222 * 17 16 15 36 36 H 1.09000 * 108.88305 * 197.54668 * 18 16 15 37 37 H 1.08998 * 108.80423 * 79.03244 * 18 16 15 38 38 H 1.09005 * 108.95400 * 197.88184 * 19 18 16 39 39 H 1.08997 * 108.95714 * 79.23180 * 19 18 16 40 40 H 1.08993 * 109.46996 * 53.88079 * 22 20 4 41 41 H 1.08999 * 109.47396 * 173.88743 * 22 20 4 42 42 H 1.09004 * 109.46506 * 293.88369 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5035 1.4444 -0.1275 5 6 4.0999 0.7396 0.9252 6 1 3.8509 -0.3173 0.8297 7 6 3.5529 1.2550 2.2314 8 1 2.8959 2.1121 2.2411 9 6 3.8914 0.6324 3.4142 10 7 4.6911 -0.4115 3.4023 11 14 3.2140 1.2717 5.0333 12 1 4.1418 2.2880 5.5913 13 1 1.8832 1.8894 4.8037 14 1 3.0782 0.1459 5.9921 15 6 5.6341 0.8945 0.9283 16 7 6.1946 0.0124 -0.0716 17 6 7.4222 -0.6283 0.4188 18 6 6.4225 0.6632 -1.3818 19 6 5.2650 1.5898 -1.7866 20 6 3.9190 0.9872 -1.4713 21 1 3.9932 -0.1003 -1.4816 22 6 2.8915 1.4422 -2.5097 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.7561 1.9283 0.9336 29 1 1.6016 1.9829 -0.8388 30 1 4.9295 -0.8493 4.2344 31 1 5.8973 1.9265 0.6958 32 1 6.0260 0.6283 1.9099 33 1 8.1816 0.1324 0.5998 34 1 7.2097 -1.1578 1.3475 35 1 7.7862 -1.3348 -0.3273 36 1 6.5398 -0.1080 -2.1431 37 1 7.3406 1.2483 -1.3285 38 1 5.3242 1.7831 -2.8578 39 1 5.3640 2.5344 -1.2520 40 1 2.7448 2.5191 -2.4278 41 1 3.2528 1.1996 -3.5090 42 1 1.9449 0.9319 -2.3317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249993816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:35 Heat of formation + Delta-G solvation = -0.948239 kcal Electronic energy + Delta-G solvation = -19349.671554 eV Core-core repulsion = 16750.242271 eV Total energy + Delta-G solvation = -2599.429282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79028 -37.58156 -35.48041 -34.17108 -32.88862 -30.30295 -28.98840 -27.37859 -26.46740 -24.63292 -23.57252 -22.89763 -20.82623 -19.87995 -18.18934 -17.16900 -16.89045 -16.27872 -15.93756 -15.59619 -15.43399 -15.16308 -14.31068 -14.15342 -14.02925 -13.58787 -13.36274 -13.15592 -12.99586 -12.80511 -12.60955 -12.52083 -12.37398 -12.28775 -12.03500 -11.88791 -11.83332 -11.74028 -11.56582 -11.23243 -11.02108 -10.71484 -10.42893 -8.86786 -8.54727 -8.02612 -6.13757 1.40880 1.42374 1.51391 2.44879 3.15037 3.38402 3.52533 4.06876 4.20978 4.24273 4.33707 4.35417 4.50101 4.57147 4.60526 4.61940 4.72520 4.82057 4.85353 4.91606 4.97156 5.01232 5.02274 5.09742 5.10320 5.21845 5.24752 5.31191 5.33704 5.39570 5.58188 5.63851 5.64836 5.77528 5.91912 6.24560 6.51590 6.57439 6.68286 7.09139 7.20368 7.58918 9.01470 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.012047 C = 0.008008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.077599 B = 2323.702560 C = 3495.781590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.072 3.928 4 N -0.548 5.548 5 C 0.250 3.750 6 H -0.036 1.036 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.015 3.985 10 N -0.912 5.912 11 Si 0.946 3.054 12 H -0.279 1.279 13 H -0.269 1.269 14 H -0.288 1.288 15 C 0.093 3.907 16 N -0.572 5.572 17 C 0.044 3.956 18 C 0.062 3.938 19 C -0.108 4.108 20 C 0.092 3.908 21 H 0.022 0.978 22 C -0.141 4.141 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.257 0.743 31 H 0.006 0.994 32 H 0.060 0.940 33 H 0.017 0.983 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.028 0.972 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 2.269 -10.623 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C -0.056 4.056 4 N -0.272 5.272 5 C 0.140 3.860 6 H -0.019 1.019 7 C -0.553 4.553 8 H 0.075 0.925 9 C -0.184 4.184 10 N -0.552 5.552 11 Si 0.773 3.227 12 H -0.205 1.205 13 H -0.193 1.193 14 H -0.214 1.214 15 C -0.036 4.036 16 N -0.297 5.297 17 C -0.104 4.104 18 C -0.065 4.065 19 C -0.146 4.146 20 C -0.016 4.016 21 H 0.040 0.960 22 C -0.198 4.198 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.512 2.261 -10.536 10.881 hybrid contribution 0.392 -0.272 1.643 1.710 sum -1.120 1.988 -8.894 9.182 Atomic orbital electron populations 1.21620 0.94266 1.01495 1.01984 1.21958 0.97130 0.99395 0.99937 1.22116 0.87308 0.94878 1.01278 1.59565 1.07382 1.58056 1.02169 1.17679 0.90155 0.90227 0.87979 1.01899 1.21591 1.28205 1.13623 0.91875 0.92529 1.25624 0.95692 0.95231 1.01827 1.70101 1.36363 1.21587 1.27137 0.85736 0.79018 0.77711 0.80240 1.20493 1.19340 1.21406 1.21785 0.97292 0.91064 0.93446 1.60823 1.28597 1.35952 1.04335 1.22203 0.90000 0.98005 1.00170 1.22450 0.96840 0.96629 0.90576 1.21471 0.93338 0.98169 1.01579 1.21188 0.95149 0.96345 0.88884 0.96036 1.22027 0.98307 1.01796 0.97711 0.92878 0.93312 0.91095 0.93283 0.95175 0.92618 0.89808 0.93439 0.97551 0.92171 0.96453 0.93530 0.90506 0.90527 0.95331 0.88640 0.92970 0.91742 0.90640 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.91 71.98 0.71 -3.36 16 2 C -0.14 -5.56 4.75 30.60 0.15 -5.42 16 3 C 0.07 2.80 4.33 86.30 0.37 3.17 16 4 N -0.55 -23.55 4.04 -865.54 -3.50 -27.06 16 5 C 0.25 12.75 1.01 45.82 0.05 12.80 16 6 H -0.04 -2.16 6.60 -2.39 -0.02 -2.17 16 7 C -0.51 -28.28 7.27 25.60 0.19 -28.09 16 8 H 0.06 3.12 6.19 -2.91 -0.02 3.10 16 9 C 0.02 0.84 5.17 84.66 0.44 1.28 16 10 N -0.91 -53.11 11.67 21.45 0.25 -52.86 16 11 Si 0.95 44.29 29.54 68.60 2.03 46.31 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 14 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 15 C 0.09 4.61 4.64 87.13 0.40 5.01 16 16 N -0.57 -24.33 4.20 -921.24 -3.87 -28.20 16 17 C 0.04 1.69 9.32 127.69 1.19 2.88 16 18 C 0.06 2.10 5.48 86.32 0.47 2.57 16 19 C -0.11 -3.47 4.92 30.12 0.15 -3.32 16 20 C 0.09 3.27 1.67 44.01 0.07 3.35 16 21 H 0.02 0.88 7.21 -2.38 -0.02 0.87 16 22 C -0.14 -3.79 7.66 71.98 0.55 -3.24 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 1.83 6.28 -2.39 -0.01 1.82 16 27 H 0.03 1.43 6.63 -2.39 -0.02 1.42 16 28 H 0.06 2.43 5.92 -2.38 -0.01 2.42 16 29 H 0.08 2.73 5.70 -2.39 -0.01 2.72 16 30 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.01 0.31 6.93 -2.38 -0.02 0.30 16 32 H 0.06 3.37 5.53 -2.39 -0.01 3.36 16 33 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 1.99 7.98 -2.39 -0.02 1.97 16 35 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.03 0.91 8.03 -2.39 -0.02 0.89 16 38 H 0.10 2.36 7.64 -2.38 -0.02 2.34 16 39 H 0.05 1.88 7.23 -2.39 -0.02 1.86 16 40 H 0.06 1.67 7.79 -2.39 -0.02 1.65 16 41 H 0.07 1.63 7.98 -2.39 -0.02 1.62 16 42 H 0.06 1.55 5.66 -2.39 -0.01 1.54 16 Total: -1.00 -61.90 303.33 0.62 -61.28 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.97 Total: 12.90 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 4.74 Total: -12.38 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -7.12 Total: -108.12 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -61.90 0.62 -61.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249993816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.331 kcal (2) G-P(sol) polarization free energy of solvation -61.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds